Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004930

Physical Location & Seq

Genomic Coordinates Reverse (-)

23317971 .. 23319636

Gene Structure 1666 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G63110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGATCATGAAGATATCTATGGCTATGTGCAAACAACCATTGCCTCCTTCGCCGACTTTAGACTTCCCTCCAGCGAGATTTGGTCCCAATATGCTAACTCTAAACCCATACGGTCCAAAGGACAAAGTTGTGGTCATCATGGGTGCTACCGGGACAGGCAAGTCACGACTCTCCGTGGATATAGCCACACGTTTTCGGGCTGAGATCATAAACTCAGACAAGATACAAGTCCACCAAGGTCTAGACATTGTAACCAACAAGATCACGAGCGAGGAGAGCTGCGGGGTACCGCACCATCTCCTCGGCGTCTTGCCGCCTGAAGCCGACTTAACCGCCGCGAATTACTGTCACATGGCGAATCTCTCCATTGAATCCGTCCTAAACCGTGGAAAGCTTCCAATCATCGTTGGAGGTTCCAACTCTTACGTGGAGGCTCTAGTGGATGACAAAGAAAACAAGTTCAGGTCGAGATACGACTGTTGTTTTCTATGGGTGGACGTGGCACTTCCCGTTTTGCACGGGTTCGTGTCTGAGAGAGTTGACAAGATGGTGGAGAGTGGAATGGTTGAGGAAGTCAGAGAATTTTTCGACTTTTCGAACTCTGATTACTCAAGAGGGATCAAGAAAGCAATCGGATTTCCGGAGTTTGACAGGTTTTTCAGGAACGAGCAGTTCTTGAATGTGGAAGACAGAGAAGAACTGTTAAGTAAAGTGTTGGAAGAAATAAAGAGGAATACATTTGAGTTAGCTTGTAGGCAGAGAGAAAAGATCGAACGGTTGAGAAAAGTGAAGAAGTGGTCTATTCAGAGAGTGGATGCGACTCCAGTCTTTACAAAGCGAAGGTCCAAGATGGATGCTAACGTGGCCTGGGAGAGGCTCGTGGCTGGACCAAGCACAGATACTGTGTCGCGGTTTCTGCTGGACATTGCCAGCCGACGACCGCTCGTGGAAGCTTCAACAGCGGTTGCGGCCGCCATGGAACGCGAGTTGTCGCGGTGTCTAGTGGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009058 GO:0009308 GO:0009451 GO:0009536 GO:0009690 GO:0009691 GO:0009824 GO:0009987 GO:0010467 GO:0010817 GO:0016070 GO:0016740 GO:0016765 GO:0034470 GO:0034641 GO:0034660 GO:0034754 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0052381 GO:0052622 GO:0052623 GO:0065007 GO:0065008 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00908 ko01100 ko01110 map00908 map01100 map01110

Pfam Domains

Protein Families

IPPT

Protein Analysis

336

Amino Acids

37.91

Weight (kDa)

8.4

Isoelectric Point (pI)

45.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IPT	PF01745	42 - 161	1.5e-06	Isopentenyl transferase
IPPT	PF01715	76 - 152	1.1e-20	IPP transferase
IPPT	PF01715	151 - 254	7.1e-13	IPP transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004930)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63110
fragaria_vesca	FvH4_2g23840
malus_domestica	MD00G1084500.v1.1 MD03G1267900.v1.1 MD11G1288800.v1.1
prunus_persica	Prupe.5G047700_v2.0.a1 Prupe.8G243600_v2.0.a1
pyrus_communis	pycom06g03440
rosa_chinensis	RchiOBHm_Chr6g0291431 RchiOBHm_Chr6g0308751
rosa_laevigata	RLG00000010623 RLG00000010625 RLG00000012115
rosa_multiflora	Rmu_sc0003735.1_g000032
rosa_roxburghii	Rroxscaffold_7G00159980 Rroxscaffold_7G00176060
rosa_rugosa	Rorug06G0219300 Rorug06G0368000
rosa_samantha	Rh6AG331600 Rh6AG479000 Rh6AG479100 Rh6BG338500 Rh6BG488600 Rh6BG488700 Rh6CG344700 Rh6CG493900 Rh6DG331600 Rh6DG479500
rosa_wichuraiana	Rw6G028790 Rw6G041750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	160
Acc65I	GGTACC	1 cut(s)	286
AccB1I	GGYRCC	1 cut(s)	286
AccBSI	CCGCTC	1 cut(s)	943
AccII	CGCG	4 cut(s)	338, 910, 984, 994
AccIII	TCCGGA	1 cut(s)	640
AclWI	GGATC	1 cut(s)	626
AcoI	YGGCCR	1 cut(s)	969
AcsI	RAATTY	1 cut(s)	581
AcuI	CTGAAG	1 cut(s)	339
AcyI	GRCGYC	1 cut(s)	306
AfaI	GTAC	1 cut(s)	288
AfiI	CCNNNNNNNGG	1 cut(s)	873
AflIII	ACRYGT	1 cut(s)	188
AgsI	TTSAA	3 cut(s)	371, 679, 957
AjiI	CACGTC	1 cut(s)	499
AjnI	CCWGG	1 cut(s)	866
AluBI	AGCT	4 cut(s)	279, 394, 749, 953
AluI	AGCT	4 cut(s)	279, 394, 749, 953
AlwI	GGATC	1 cut(s)	626
AlwNI	CAGNNNCTG	1 cut(s)	902
Aor13HI	TCCGGA	1 cut(s)	640
AoxI	GGCC	2 cut(s)	864, 969
ApeKI	GCWGC	1 cut(s)	279
ApoI	RAATTY	1 cut(s)	581
ArsI	GACNNNNNNTTYG	4 cut(s)	117, 149, 827, 859
Asp718I	GGTACC	1 cut(s)	286
AspS9I	GGNCC	4 cut(s)	83, 113, 843, 887
AsuC2I	CCSGG	1 cut(s)	151
AsuII	TTCGAA	1 cut(s)	596
AvaII	GGWCC	4 cut(s)	83, 113, 843, 887
BaeI	ACNNNNGTAYC	2 cut(s)	463, 496
BanI	GGYRCC	1 cut(s)	286
BauI	CACGAG	3 cut(s)	265, 878, 944
BbsI	GAAGAC	1 cut(s)	693
BbvI	GCAGC	1 cut(s)	266
BccI	CCATC	3 cut(s)	303, 541, 844
BciT130I	CCWGG	1 cut(s)	868
BclI	TGATCA	1 cut(s)	3
BcnI	CCSGG	1 cut(s)	151
BfaI	CTAG	3 cut(s)	242, 437, 1001
BisI	GCNGC	5 cut(s)	280, 314, 336, 969, 972
BlsI	GCNGC	5 cut(s)	281, 315, 337, 970, 973
Bme1390I	CCNGG	2 cut(s)	151, 868
Bme18I	GGWCC	4 cut(s)	83, 113, 843, 887
BmgBI	CACGTC	1 cut(s)	499
BmgT120I	GGNCC	4 cut(s)	83, 113, 843, 887
BmiI	GGNNCC	3 cut(s)	85, 288, 415
BmrFI	CCNGG	2 cut(s)	151, 868
BmsI	GCATC	2 cut(s)	805, 844
BoxI	GACNNNNGTC	1 cut(s)	824
BpiI	GAAGAC	1 cut(s)	693
BpmI	CTGGAG	2 cut(s)	54, 807
Bpu14I	TTCGAA	1 cut(s)	596
BpuEI	CTTGAG	1 cut(s)	595
BpuMI	CCSGG	1 cut(s)	151
BsaAI	YACGTR	1 cut(s)	427
BsaHI	GRCGYC	1 cut(s)	306
BsaJI	CCNNGG	6 cut(s)	174, 235, 301, 385, 867, 975
BsaWI	WCCGGW	1 cut(s)	640
Bsc4I	CCNNNNNNNGG	1 cut(s)	873
Bse1I	ACTGG	1 cut(s)	824
Bse3DI	GCAATG	2 cut(s)	38, 924
BseAI	TCCGGA	1 cut(s)	640
BseBI	CCWGG	1 cut(s)	868
BseDI	CCNNGG	6 cut(s)	174, 235, 301, 385, 867, 975
BseGI	GGATG	3 cut(s)	448, 820, 859
BseLI	CCNNNNNNNGG	1 cut(s)	873
BseMI	GCAATG	2 cut(s)	38, 924
BseMII	CTCAG	3 cut(s)	192, 228, 522
BseNI	ACTGG	1 cut(s)	824
BseRI	GAGGAG	2 cut(s)	287, 290
BseX3I	CGGCCG	1 cut(s)	969
BseXI	GCAGC	1 cut(s)	266
Bsh1236I	CGCG	4 cut(s)	338, 910, 984, 994
Bsh1285I	CGRYCG	2 cut(s)	941, 972
BshFI	GGCC	2 cut(s)	866, 971
BshNI	GGYRCC	1 cut(s)	286
BsiEI	CGRYCG	2 cut(s)	941, 972
BsiSI	CCGG	2 cut(s)	150, 641
BslFI	GGGAC	2 cut(s)	69, 166
BslI	CCNNNNNNNGG	1 cut(s)	873
BsmFI	GGGAC	2 cut(s)	69, 166
BsnI	GGCC	2 cut(s)	866, 971
Bsp119I	TTCGAA	1 cut(s)	596
Bsp13I	TCCGGA	1 cut(s)	640
Bsp143I	GATC	5 cut(s)	3, 204, 261, 618, 768
Bsp19I	CCATGG	1 cut(s)	975
BspANI	GGCC	2 cut(s)	866, 971
BspCNI	CTCAG	3 cut(s)	193, 227, 523
BspEI	TCCGGA	1 cut(s)	640
BspFNI	CGCG	4 cut(s)	338, 910, 984, 994
BspHI	TCATGA	1 cut(s)	6
BspLI	GGNNCC	3 cut(s)	85, 288, 415
BspPI	GGATC	1 cut(s)	626
BspT104I	TTCGAA	1 cut(s)	596
BspT107I	GGYRCC	1 cut(s)	286
BsrBI	CCGCTC	1 cut(s)	943
BsrDI	GCAATG	2 cut(s)	38, 924
BsrI	ACTGG	1 cut(s)	824
BssECI	CCNNGG	6 cut(s)	174, 235, 301, 385, 867, 975
BssMI	GATC	5 cut(s)	3, 204, 261, 618, 768
BssNI	GRCGYC	1 cut(s)	306
BssSI	CACGAG	3 cut(s)	265, 878, 944
BssT1I	CCWWGG	2 cut(s)	235, 975
Bst2BI	CACGAG	3 cut(s)	265, 878, 944
Bst2UI	CCWGG	1 cut(s)	868
Bst4CI	ACNGT	7 cut(s)	113, 347, 386, 479, 702, 777, 904
BstACI	GRCGYC	1 cut(s)	306
BstBAI	YACGTR	1 cut(s)	427
BstBI	TTCGAA	1 cut(s)	596
BstC8I	GCNNGC	1 cut(s)	931
BstDEI	CTNAG	3 cut(s)	201, 214, 531
BstDSI	CCRYGG	3 cut(s)	174, 385, 975
BstENI	CCTNNNNNAGG	1 cut(s)	871
BstF5I	GGATG	3 cut(s)	448, 820, 859
BstFNI	CGCG	4 cut(s)	338, 910, 984, 994
BstKTI	GATC	5 cut(s)	6, 207, 264, 621, 771
BstMBI	GATC	5 cut(s)	3, 204, 261, 618, 768
BstMCI	CGRYCG	2 cut(s)	941, 972
BstMWI	GCNNNNNNNGC	6 cut(s)	49, 276, 863, 916, 959, 968
BstNI	CCWGG	1 cut(s)	868
BstPAI	GACNNNNGTC	1 cut(s)	824
BstSCI	CCNGG	2 cut(s)	149, 866
BstUI	CGCG	4 cut(s)	338, 910, 984, 994
BstV1I	GCAGC	1 cut(s)	266
BstV2I	GAAGAC	1 cut(s)	693
BstZI	CGGCCG	1 cut(s)	969
BsuRI	GGCC	2 cut(s)	866, 971
BtgI	CCRYGG	3 cut(s)	174, 385, 975
BtrI	CACGTC	1 cut(s)	499
BtsCI	GGATG	3 cut(s)	448, 820, 859
Cac8I	GCNNGC	1 cut(s)	931
CaiI	CAGNNNCTG	1 cut(s)	902
CciI	TCATGA	1 cut(s)	6
CciNI	GCGGCCGC	1 cut(s)	969
Cfr13I	GGNCC	4 cut(s)	83, 113, 843, 887
CseI	GACGC	1 cut(s)	295
Csp6I	GTAC	1 cut(s)	287
CviAII	CATG	4 cut(s)	7, 139, 352, 976
CviQI	GTAC	1 cut(s)	287
DdeI	CTNAG	3 cut(s)	201, 214, 531
DpnI	GATC	5 cut(s)	5, 206, 263, 620, 770
DpnII	GATC	5 cut(s)	3, 204, 261, 618, 768
DrdI	GACNNNNNNGTC	1 cut(s)	160
DseDI	GACNNNNNNGTC	1 cut(s)	160
EaeI	YGGCCR	1 cut(s)	969
EagI	CGGCCG	1 cut(s)	969
EclXI	CGGCCG	1 cut(s)	969
Eco130I	CCWWGG	2 cut(s)	235, 975
Eco32I	GATATC	1 cut(s)	15
Eco47I	GGWCC	4 cut(s)	83, 113, 843, 887
Eco52I	CGGCCG	1 cut(s)	969
Eco57I	CTGAAG	1 cut(s)	339
EcoNI	CCTNNNNNAGG	1 cut(s)	871
EcoRII	CCWGG	1 cut(s)	866
EcoRV	GATATC	1 cut(s)	15
EcoT14I	CCWWGG	2 cut(s)	235, 975
ErhI	CCWWGG	2 cut(s)	235, 975
FaeI	CATG	4 cut(s)	10, 142, 355, 979
FaqI	GGGAC	2 cut(s)	69, 166
FatI	CATG	4 cut(s)	6, 138, 351, 975
FauI	CCCGC	1 cut(s)	275
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	5 cut(s)	280, 314, 336, 969, 972
FokI	GGATG	3 cut(s)	455, 827, 866
Fsp4HI	GCNGC	5 cut(s)	280, 314, 336, 969, 972
FspBI	CTAG	3 cut(s)	242, 437, 1001
GluI	GCNGC	5 cut(s)	280, 314, 336, 969, 972
GsuI	CTGGAG	2 cut(s)	54, 807
HaeIII	GGCC	2 cut(s)	866, 971
HapII	CCGG	2 cut(s)	150, 641
HgaI	GACGC	1 cut(s)	295
Hin1I	GRCGYC	1 cut(s)	306
Hin1II	CATG	4 cut(s)	10, 142, 355, 979
HincII	GTYRAC	1 cut(s)	541
HindII	GTYRAC	1 cut(s)	541
HindIII	AAGCTT	2 cut(s)	392, 951
HinfI	GANTC	4 cut(s)	168, 358, 371, 820
HpaII	CCGG	2 cut(s)	150, 641
Hpy166II	GTNNAC	3 cut(s)	232, 496, 541
Hpy188I	TCNGA	6 cut(s)	217, 532, 578, 604, 635, 807
Hpy8I	GTNNAC	3 cut(s)	232, 496, 541
Hpy99I	CGWCG	1 cut(s)	939
HpyAV	CCTTC	2 cut(s)	57, 834
HpyCH4III	ACNGT	7 cut(s)	113, 347, 386, 479, 702, 777, 904
HpyCH4IV	ACGT	4 cut(s)	190, 426, 498, 861
HpyCH4V	TGCA	2 cut(s)	30, 517
HpyF10VI	GCNNNNNNNGC	6 cut(s)	49, 276, 863, 916, 959, 968
HpyF3I	CTNAG	3 cut(s)	201, 214, 531
HpySE526I	ACGT	4 cut(s)	190, 426, 498, 861
Hsp92I	GRCGYC	1 cut(s)	306
Hsp92II	CATG	4 cut(s)	10, 142, 355, 979
Kpn2I	TCCGGA	1 cut(s)	640
KpnI	GGTACC	1 cut(s)	290
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	5 cut(s)	3, 204, 261, 618, 768
Lsp1109I	GCAGC	1 cut(s)	266
LweI	GCATC	2 cut(s)	805, 844
MaeI	CTAG	3 cut(s)	242, 437, 1001
MaeII	ACGT	4 cut(s)	190, 426, 498, 861
MaeIII	GTNAC	3 cut(s)	162, 250, 347
MalI	GATC	5 cut(s)	5, 206, 263, 620, 770
MbiI	CCGCTC	1 cut(s)	943
MboI	GATC	5 cut(s)	3, 204, 261, 618, 768
MboII	GAAGA	5 cut(s)	22, 698, 707, 731, 802
MluCI	AATT	2 cut(s)	340, 581
MlyI	GAGTC	2 cut(s)	162, 814
MmeI	TCCRAC	3 cut(s)	388, 441, 696
MroI	TCCGGA	1 cut(s)	640
MseI	TTAA	2 cut(s)	329, 704
MspA1I	CMGCKG	1 cut(s)	962
MspI	CCGG	2 cut(s)	150, 641
MspR9I	CCNGG	2 cut(s)	151, 868
MvaI	CCWGG	1 cut(s)	868
MvnI	CGCG	4 cut(s)	338, 910, 984, 994
MwoI	GCNNNNNNNGC	6 cut(s)	49, 276, 863, 916, 959, 968
NciI	CCSGG	1 cut(s)	151
NcoI	CCATGG	1 cut(s)	975
NdeII	GATC	5 cut(s)	3, 204, 261, 618, 768
NlaIII	CATG	4 cut(s)	10, 142, 355, 979
NlaIV	GGNNCC	3 cut(s)	85, 288, 415
NmeAIII	GCCGAG	1 cut(s)	282
NmuCI	GTSAC	2 cut(s)	162, 347
NotI	GCGGCCGC	1 cut(s)	969
NspV	TTCGAA	1 cut(s)	596
PagI	TCATGA	1 cut(s)	6
PfeI	GAWTC	2 cut(s)	358, 371
PkrI	GCNGC	5 cut(s)	281, 315, 337, 970, 973
PleI	GAGTC	2 cut(s)	162, 814
PpsI	GAGTC	2 cut(s)	162, 814
Ppu21I	YACGTR	1 cut(s)	427
PshAI	GACNNNNGTC	1 cut(s)	824
Psp6I	CCWGG	1 cut(s)	866
PspGI	CCWGG	1 cut(s)	866
PspN4I	GGNNCC	3 cut(s)	85, 288, 415
PspPI	GGNCC	4 cut(s)	83, 113, 843, 887
PsrI	GAACNNNNNNTAC	2 cut(s)	590, 622
PstNI	CAGNNNCTG	1 cut(s)	902
RsaI	GTAC	1 cut(s)	288
RsaNI	GTAC	1 cut(s)	287
SaqAI	TTAA	2 cut(s)	329, 704
SatI	GCNGC	5 cut(s)	280, 314, 336, 969, 972
Sau3AI	GATC	5 cut(s)	3, 204, 261, 618, 768
Sau96I	GGNCC	4 cut(s)	83, 113, 843, 887
SchI	GAGTC	2 cut(s)	162, 814
ScrFI	CCNGG	2 cut(s)	151, 868
SfaNI	GCATC	2 cut(s)	805, 844
SfuI	TTCGAA	1 cut(s)	596
SinI	GGWCC	4 cut(s)	83, 113, 843, 887
SmlI	CTYRAG	1 cut(s)	610
SmoI	CTYRAG	1 cut(s)	610
Sse9I	AATT	2 cut(s)	340, 581
SspMI	CTAG	3 cut(s)	242, 437, 1001
StyD4I	CCNGG	2 cut(s)	149, 866
StyI	CCWWGG	2 cut(s)	235, 975
TaaI	ACNGT	7 cut(s)	113, 347, 386, 479, 702, 777, 904
TaiI	ACGT	4 cut(s)	193, 429, 501, 864
TaqI	TCGA	4 cut(s)	467, 588, 596, 771
TasI	AATT	2 cut(s)	340, 581
TauI	GCSGC	4 cut(s)	316, 338, 971, 974
TfiI	GAWTC	2 cut(s)	358, 371
Tru1I	TTAA	2 cut(s)	329, 704
Tru9I	TTAA	2 cut(s)	329, 704
TseFI	GTSAC	2 cut(s)	162, 347
TseI	GCWGC	1 cut(s)	279
Tsp45I	GTSAC	2 cut(s)	162, 347
TspDTI	ATGAA	1 cut(s)	23
TspGWI	ACGGA	2 cut(s)	163, 364
VpaK11BI	GGWCC	4 cut(s)	83, 113, 843, 887
XagI	CCTNNNNNAGG	1 cut(s)	871
XapI	RAATTY	1 cut(s)	581
XbaI	TCTAGA	1 cut(s)	241
XcmI	CCANNNNNNNNNTGG	1 cut(s)	424
XspI	CTAG	3 cut(s)	242, 437, 1001

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.