Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0004930

Physical Location & Seq

Genomic Coordinates Reverse (-)

66054347 .. 66063228

Gene Structure 8882 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG479100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGGATCTACCAAAGGTGCGGAACTCCCCACGAACAAGGAGAAGGTCATTTTCATCATGGGATCGACTGGATCCGGAAAAACCAAACTCTCTGTAGATTTAGCATTACAGTTTAAGGGTGAAATCATCAATTCTGACAAAATTCAAGTCTACAAAGGTGGCGATATTATTACTAATAAAGTCTCGGAGATCGAGCGCCAAGGAATTCGCCACCATTTGCTAGGGTTTATTGAAGACACTGAGGAGGACTTCACCATAGAAGATTTTTGCCACCATGTCCAAGGTGCCATTAAAGAAATTATTAACAGCAATTCGATCCCAATCATTGCAGAGCGCATAGCTCGCTGCACAGTTGCTCAAACAATTTCATCTATCGATCATCGCTCTTCACAAAAGTTGGGCTACTGTGAGACATTTCATTTGGAGAGGTTTCTGGAAGACCTTGGTTCGATTGGCCAAAAGAAACTGGTGAAGACATTGATATATTTTGAAGACATTGATATATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009058 GO:0009308 GO:0009451 GO:0009536 GO:0009690 GO:0009691 GO:0009824 GO:0009987 GO:0010467 GO:0010817 GO:0016070 GO:0016740 GO:0016765 GO:0034470 GO:0034641 GO:0034660 GO:0034754 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0052381 GO:0052622 GO:0052623 GO:0065007 GO:0065008 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00908 ko01100 ko01110 map00908 map01100 map01110

Pfam Domains

Protein Families

IPPT

Protein Analysis

169

Amino Acids

18.94

Weight (kDa)

5.68

Isoelectric Point (pI)

34.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IPPT	PF01715	49 - 109	1.2e-13	IPP transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004930)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63110
fragaria_vesca	FvH4_2g23840
malus_domestica	MD00G1084500.v1.1 MD03G1267900.v1.1 MD11G1288800.v1.1
prunus_persica	Prupe.5G047700_v2.0.a1 Prupe.8G243600_v2.0.a1
pyrus_communis	pycom06g03440
rosa_chinensis	RchiOBHm_Chr6g0291431 RchiOBHm_Chr6g0308751
rosa_laevigata	RLG00000010623 RLG00000010625 RLG00000012115
rosa_multiflora	Rmu_sc0003735.1_g000032
rosa_roxburghii	Rroxscaffold_7G00159980 Rroxscaffold_7G00176060
rosa_rugosa	Rorug06G0219300 Rorug06G0368000
rosa_samantha	Rh6AG331600 Rh6AG479000 Rh6AG479100 Rh6BG338500 Rh6BG488600 Rh6BG488700 Rh6CG344700 Rh6CG493900 Rh6DG331600 Rh6DG479500
rosa_wichuraiana	Rw6G028790 Rw6G041750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	284
AccI	GTMKAC	1 cut(s)	150
AccIII	TCCGGA	1 cut(s)	74
AciI	CCGC	1 cut(s)	20
AclWI	GGATC	5 cut(s)	13, 66, 70, 79, 310
AcoI	YGGCCR	1 cut(s)	454
AcsI	RAATTY	2 cut(s)	141, 204
AgsI	TTSAA	3 cut(s)	146, 233, 491
AluBI	AGCT	1 cut(s)	341
AluI	AGCT	1 cut(s)	341
Alw26I	GTCTC	2 cut(s)	187, 404
AlwI	GGATC	5 cut(s)	13, 66, 70, 79, 310
Aor13HI	TCCGGA	1 cut(s)	74
AoxI	GGCC	1 cut(s)	454
ApeKI	GCWGC	1 cut(s)	345
ApoI	RAATTY	2 cut(s)	141, 204
ArsI	GACNNNNNNTTYG	4 cut(s)	132, 164, 403, 435
AspLEI	GCGC	2 cut(s)	198, 336
AsuHPI	GGTGA	3 cut(s)	131, 244, 481
BalI	TGGCCA	1 cut(s)	456
BamHI	GGATCC	1 cut(s)	71
BanI	GGYRCC	1 cut(s)	284
BbsI	GAAGAC	4 cut(s)	240, 444, 479, 498
BbvI	GCAGC	1 cut(s)	332
BcoDI	GTCTC	2 cut(s)	187, 404
BfaI	CTAG	1 cut(s)	221
BfmI	CTRYAG	1 cut(s)	93
BfoI	RGCGCY	1 cut(s)	199
BisI	GCNGC	1 cut(s)	346
BlsI	GCNGC	1 cut(s)	347
BmiI	GGNNCC	2 cut(s)	73, 286
BpiI	GAAGAC	4 cut(s)	240, 444, 479, 498
Bsa29I	ATCGAT	1 cut(s)	375
BsaBI	GATNNNNATC	1 cut(s)	320
BsaJI	CCNNGG	3 cut(s)	199, 280, 442
BsaWI	WCCGGW	1 cut(s)	74
Bse1I	ACTGG	2 cut(s)	73, 471
Bse3DI	GCAATG	1 cut(s)	324
Bse8I	GATNNNNATC	1 cut(s)	320
BseAI	TCCGGA	1 cut(s)	74
BseCI	ATCGAT	1 cut(s)	375
BseDI	CCNNGG	3 cut(s)	199, 280, 442
BseJI	GATNNNNATC	1 cut(s)	320
BseMI	GCAATG	1 cut(s)	324
BseMII	CTCAG	1 cut(s)	231
BseNI	ACTGG	2 cut(s)	73, 471
BseRI	GAGGAG	1 cut(s)	257
BseXI	GCAGC	1 cut(s)	332
BsgI	GTGCAG	1 cut(s)	331
BshFI	GGCC	1 cut(s)	456
BshNI	GGYRCC	1 cut(s)	284
BshVI	ATCGAT	1 cut(s)	375
BsiSI	CCGG	1 cut(s)	75
BsmAI	GTCTC	2 cut(s)	187, 404
BsnI	GGCC	1 cut(s)	456
Bsp13I	TCCGGA	1 cut(s)	74
Bsp143I	GATC	6 cut(s)	5, 62, 71, 189, 315, 376
BspACI	CCGC	1 cut(s)	20
BspANI	GGCC	1 cut(s)	456
BspCNI	CTCAG	1 cut(s)	232
BspDI	ATCGAT	1 cut(s)	375
BspEI	TCCGGA	1 cut(s)	74
BspLI	GGNNCC	2 cut(s)	73, 286
BspPI	GGATC	5 cut(s)	13, 66, 70, 79, 310
BspQI	GCTCTTC	1 cut(s)	391
BspT107I	GGYRCC	1 cut(s)	284
BsrDI	GCAATG	1 cut(s)	324
BsrI	ACTGG	2 cut(s)	73, 471
BssECI	CCNNGG	3 cut(s)	199, 280, 442
BssMI	GATC	6 cut(s)	5, 62, 71, 189, 315, 376
BssT1I	CCWWGG	3 cut(s)	199, 280, 442
Bst4CI	ACNGT	3 cut(s)	111, 352, 407
Bst6I	CTCTTC	1 cut(s)	391
BstC8I	GCNNGC	1 cut(s)	343
BstDEI	CTNAG	1 cut(s)	240
BstH2I	RGCGCY	1 cut(s)	199
BstHHI	GCGC	2 cut(s)	198, 336
BstKTI	GATC	6 cut(s)	8, 65, 74, 192, 318, 379
BstMAI	GTCTC	2 cut(s)	187, 404
BstMBI	GATC	6 cut(s)	5, 62, 71, 189, 315, 376
BstMWI	GCNNNNNNNGC	1 cut(s)	342
BstSFI	CTRYAG	1 cut(s)	93
BstV1I	GCAGC	1 cut(s)	332
BstV2I	GAAGAC	4 cut(s)	240, 444, 479, 498
BstX2I	RGATCY	2 cut(s)	5, 71
BstYI	RGATCY	2 cut(s)	5, 71
Bsu15I	ATCGAT	1 cut(s)	375
BsuRI	GGCC	1 cut(s)	456
BsuTUI	ATCGAT	1 cut(s)	375
BtgZI	GCGATG	1 cut(s)	365
BtsIMutI	CAGTG	1 cut(s)	237
Cac8I	GCNNGC	1 cut(s)	343
CfoI	GCGC	2 cut(s)	198, 336
ClaI	ATCGAT	1 cut(s)	375
CviAII	CATG	2 cut(s)	58, 275
CviJI	RGCY	3 cut(s)	341, 402, 456
CviKI_1	RGCY	3 cut(s)	341, 402, 456
DdeI	CTNAG	1 cut(s)	240
DpnI	GATC	6 cut(s)	7, 64, 73, 191, 317, 378
DpnII	GATC	6 cut(s)	5, 62, 71, 189, 315, 376
EaeI	YGGCCR	1 cut(s)	454
Eam1104I	CTCTTC	1 cut(s)	391
EarI	CTCTTC	1 cut(s)	391
Eco130I	CCWWGG	3 cut(s)	199, 280, 442
EcoRI	GAATTC	1 cut(s)	204
EcoT14I	CCWWGG	3 cut(s)	199, 280, 442
ErhI	CCWWGG	3 cut(s)	199, 280, 442
FaeI	CATG	2 cut(s)	61, 278
FaiI	YATR	6 cut(s)	59, 257, 276, 338, 484, 503
FatI	CATG	2 cut(s)	57, 274
FblI	GTMKAC	1 cut(s)	150
Fnu4HI	GCNGC	1 cut(s)	346
Fsp4HI	GCNGC	1 cut(s)	346
FspBI	CTAG	1 cut(s)	221
GlaI	GCGC	2 cut(s)	197, 335
GluI	GCNGC	1 cut(s)	346
HaeII	RGCGCY	1 cut(s)	199
HaeIII	GGCC	1 cut(s)	456
HapII	CCGG	1 cut(s)	75
HhaI	GCGC	2 cut(s)	198, 336
Hin1II	CATG	2 cut(s)	61, 278
Hin6I	GCGC	2 cut(s)	196, 334
HinP1I	GCGC	2 cut(s)	196, 334
HpaII	CCGG	1 cut(s)	75
HphI	GGTGA	3 cut(s)	131, 244, 481
Hpy166II	GTNNAC	1 cut(s)	151
Hpy188I	TCNGA	2 cut(s)	136, 187
Hpy188III	TCNNGA	2 cut(s)	75, 434
Hpy8I	GTNNAC	1 cut(s)	151
HpyAV	CCTTC	1 cut(s)	37
HpyCH4III	ACNGT	3 cut(s)	111, 352, 407
HpyCH4V	TGCA	2 cut(s)	329, 348
HpyF10VI	GCNNNNNNNGC	1 cut(s)	342
HpyF3I	CTNAG	1 cut(s)	240
Hsp92II	CATG	2 cut(s)	61, 278
HspAI	GCGC	2 cut(s)	196, 334
Kpn2I	TCCGGA	1 cut(s)	74
Kzo9I	GATC	6 cut(s)	5, 62, 71, 189, 315, 376
LguI	GCTCTTC	1 cut(s)	391
LpnPI	CCDG	4 cut(s)	54, 88, 419, 452
Lsp1109I	GCAGC	1 cut(s)	332
MaeI	CTAG	1 cut(s)	221
MalI	GATC	6 cut(s)	7, 64, 73, 191, 317, 378
MboI	GATC	6 cut(s)	5, 62, 71, 189, 315, 376
MboII	GAAGA	6 cut(s)	245, 272, 378, 449, 484, 503
MflI	RGATCY	2 cut(s)	5, 71
MlsI	TGGCCA	1 cut(s)	456
MluCI	AATT	6 cut(s)	130, 141, 204, 297, 310, 363
MluNI	TGGCCA	1 cut(s)	456
MnlI	CCTC	3 cut(s)	235, 238, 420
Mox20I	TGGCCA	1 cut(s)	456
MroI	TCCGGA	1 cut(s)	74
MscI	TGGCCA	1 cut(s)	456
MseI	TTAA	3 cut(s)	114, 291, 303
Msp20I	TGGCCA	1 cut(s)	456
MspI	CCGG	1 cut(s)	75
MwoI	GCNNNNNNNGC	1 cut(s)	342
NdeII	GATC	6 cut(s)	5, 62, 71, 189, 315, 376
NlaIII	CATG	2 cut(s)	61, 278
NlaIV	GGNNCC	2 cut(s)	73, 286
PciSI	GCTCTTC	1 cut(s)	391
PkrI	GCNGC	1 cut(s)	347
PspN4I	GGNNCC	2 cut(s)	73, 286
PsuI	RGATCY	2 cut(s)	5, 71
SapI	GCTCTTC	1 cut(s)	391
SaqAI	TTAA	3 cut(s)	114, 291, 303
SatI	GCNGC	1 cut(s)	346
Sau3AI	GATC	6 cut(s)	5, 62, 71, 189, 315, 376
SetI	ASST	7 cut(s)	19, 48, 160, 286, 343, 431, 444
SfcI	CTRYAG	1 cut(s)	93
Sse9I	AATT	6 cut(s)	130, 141, 204, 297, 310, 363
SsiI	CCGC	1 cut(s)	20
SspMI	CTAG	1 cut(s)	221
StyI	CCWWGG	3 cut(s)	199, 280, 442
TaaI	ACNGT	3 cut(s)	111, 352, 407
TaqI	TCGA	5 cut(s)	65, 192, 314, 375, 449
TasI	AATT	6 cut(s)	130, 141, 204, 297, 310, 363
Tru1I	TTAA	3 cut(s)	114, 291, 303
Tru9I	TTAA	3 cut(s)	114, 291, 303
TscAI	CASTG	1 cut(s)	244
TseI	GCWGC	1 cut(s)	345
TspDTI	ATGAA	3 cut(s)	43, 357, 407
TspRI	CASTG	1 cut(s)	244
XapI	RAATTY	2 cut(s)	141, 204
XmiI	GTMKAC	1 cut(s)	150
XspI	CTAG	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.