Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0004930

Physical Location & Seq

Genomic Coordinates Forward (+)

3068622 .. 3068966

Gene Structure 345 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010625

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGCGGATAGAAATAATGAAGATGAGGATACCAAGATGTCATTGCTTGAAGCTGGCATCAAAGATATTAAGGAAAACACCTGCAAGCTCGTTGATCGCCAAACAGAAAAGATTCAACGTCTGAAGGATGAACTTGGATGGGACATTCATCGACTTGATGTAACATGTGTGCATCAGAGACATGGAGAAGAAGCTAAGAATGCACGGAGAGCTTTTGTTTTGGAACCGAGTTTGGCTATTGTGGAATGTTTTTTGAAGAATTTTCCTTATCCAGGACAGTCAAAACCTAAGTGGTCTATGTTTGGGAAAATTTTTAACAAAATTGCAGCGTTGAGAAATCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009058 GO:0009308 GO:0009451 GO:0009536 GO:0009690 GO:0009691 GO:0009824 GO:0009987 GO:0010467 GO:0010817 GO:0016070 GO:0016740 GO:0016765 GO:0034470 GO:0034641 GO:0034660 GO:0034754 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0052381 GO:0052622 GO:0052623 GO:0065007 GO:0065008 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00908 ko01100 ko01110 map00908 map01100 map01110

Pfam Domains

Protein Families

IPPT

Protein Analysis

115

Amino Acids

13.24

Weight (kDa)

8.46

Isoelectric Point (pI)

37.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004930)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63110
fragaria_vesca	FvH4_2g23840
malus_domestica	MD00G1084500.v1.1 MD03G1267900.v1.1 MD11G1288800.v1.1
prunus_persica	Prupe.5G047700_v2.0.a1 Prupe.8G243600_v2.0.a1
pyrus_communis	pycom06g03440
rosa_chinensis	RchiOBHm_Chr6g0291431 RchiOBHm_Chr6g0308751
rosa_laevigata	RLG00000010623 RLG00000010625 RLG00000012115
rosa_multiflora	Rmu_sc0003735.1_g000032
rosa_roxburghii	Rroxscaffold_7G00159980 Rroxscaffold_7G00176060
rosa_rugosa	Rorug06G0219300 Rorug06G0368000
rosa_samantha	Rh6AG331600 Rh6AG479000 Rh6AG479100 Rh6BG338500 Rh6BG488600 Rh6BG488700 Rh6CG344700 Rh6CG493900 Rh6DG331600 Rh6DG479500
rosa_wichuraiana	Rw6G028790 Rw6G041750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	89
Acc36I	ACCTGC	1 cut(s)	89
AciI	CCGC	1 cut(s)	5
AcsI	RAATTY	2 cut(s)	259, 309
AcuI	CTGAAG	1 cut(s)	143
AfiI	CCNNNNNNNGG	1 cut(s)	272
AflIII	ACRYGT	1 cut(s)	164
AgsI	TTSAA	3 cut(s)	50, 116, 256
AjnI	CCWGG	1 cut(s)	271
AluBI	AGCT	4 cut(s)	53, 88, 194, 212
AluI	AGCT	4 cut(s)	53, 88, 194, 212
Alw26I	GTCTC	1 cut(s)	172
ApeKI	GCWGC	1 cut(s)	326
ApoI	RAATTY	2 cut(s)	259, 309
Asp700I	GAANNNNTTC	1 cut(s)	111
BbvI	GCAGC	1 cut(s)	338
BccI	CCATC	1 cut(s)	132
BciT130I	CCWGG	1 cut(s)	273
BciVI	GTATCC	1 cut(s)	22
BcoDI	GTCTC	1 cut(s)	172
BfuAI	ACCTGC	1 cut(s)	89
BfuI	GTATCC	1 cut(s)	22
BisI	GCNGC	1 cut(s)	327
BlsI	GCNGC	1 cut(s)	328
Bme1390I	CCNGG	1 cut(s)	273
BmiI	GGNNCC	1 cut(s)	225
BmrFI	CCNGG	1 cut(s)	273
BmsI	GCATC	2 cut(s)	66, 181
Bsc4I	CCNNNNNNNGG	1 cut(s)	272
Bse3DI	GCAATG	1 cut(s)	41
BseBI	CCWGG	1 cut(s)	273
BseGI	GGATG	2 cut(s)	133, 143
BseLI	CCNNNNNNNGG	1 cut(s)	272
BseMI	GCAATG	1 cut(s)	41
BseXI	GCAGC	1 cut(s)	338
BslFI	GGGAC	1 cut(s)	155
BslI	CCNNNNNNNGG	1 cut(s)	272
BsmAI	GTCTC	1 cut(s)	172
BsmFI	GGGAC	1 cut(s)	155
BsmI	GAATGC	1 cut(s)	205
Bsp143I	GATC	1 cut(s)	94
BspACI	CCGC	1 cut(s)	5
BspLI	GGNNCC	1 cut(s)	225
BspMI	ACCTGC	1 cut(s)	89
BsrDI	GCAATG	1 cut(s)	41
BssMI	GATC	1 cut(s)	94
Bst2UI	CCWGG	1 cut(s)	273
Bst4CI	ACNGT	1 cut(s)	279
BstC8I	GCNNGC	2 cut(s)	55, 86
BstDEI	CTNAG	2 cut(s)	195, 288
BstENI	CCTNNNNNAGG	1 cut(s)	270
BstF5I	GGATG	2 cut(s)	133, 143
BstKTI	GATC	1 cut(s)	97
BstMAI	GTCTC	1 cut(s)	172
BstMBI	GATC	1 cut(s)	94
BstMWI	GCNNNNNNNGC	2 cut(s)	200, 209
BstNI	CCWGG	1 cut(s)	273
BstNSI	RCATGY	1 cut(s)	168
BstSCI	CCNGG	1 cut(s)	271
BstV1I	GCAGC	1 cut(s)	338
BsuI	GTATCC	1 cut(s)	22
BtsCI	GGATG	2 cut(s)	133, 143
BveI	ACCTGC	1 cut(s)	89
Cac8I	GCNNGC	2 cut(s)	55, 86
CviAII	CATG	2 cut(s)	165, 182
CviJI	RGCY	5 cut(s)	53, 88, 194, 212, 236
CviKI_1	RGCY	5 cut(s)	53, 88, 194, 212, 236
DdeI	CTNAG	2 cut(s)	195, 288
DpnI	GATC	1 cut(s)	96
DpnII	GATC	1 cut(s)	94
EciI	GGCGGA	1 cut(s)	20
Eco57I	CTGAAG	1 cut(s)	143
EcoNI	CCTNNNNNAGG	1 cut(s)	270
EcoRII	CCWGG	1 cut(s)	271
FaeI	CATG	2 cut(s)	168, 185
FaiI	YATR	3 cut(s)	166, 183, 299
FaqI	GGGAC	1 cut(s)	155
FatI	CATG	2 cut(s)	164, 181
Fnu4HI	GCNGC	1 cut(s)	327
FokI	GGATG	2 cut(s)	140, 150
Fsp4HI	GCNGC	1 cut(s)	327
GluI	GCNGC	1 cut(s)	327
Hin1II	CATG	2 cut(s)	168, 185
HinfI	GANTC	1 cut(s)	112
Hpy188I	TCNGA	2 cut(s)	123, 177
HpyAV	CCTTC	1 cut(s)	118
HpyCH4III	ACNGT	1 cut(s)	279
HpyCH4IV	ACGT	1 cut(s)	118
HpyCH4V	TGCA	4 cut(s)	84, 172, 203, 326
HpyF10VI	GCNNNNNNNGC	2 cut(s)	200, 209
HpyF3I	CTNAG	2 cut(s)	195, 288
HpySE526I	ACGT	1 cut(s)	118
Hsp92II	CATG	2 cut(s)	168, 185
Kzo9I	GATC	1 cut(s)	94
LpnPI	CCDG	4 cut(s)	39, 94, 258, 285
Lsp1109I	GCAGC	1 cut(s)	338
LweI	GCATC	2 cut(s)	66, 181
MaeII	ACGT	1 cut(s)	118
MaeIII	GTNAC	1 cut(s)	160
MalI	GATC	1 cut(s)	96
MboI	GATC	1 cut(s)	94
MboII	GAAGA	3 cut(s)	32, 200, 268
MluCI	AATT	3 cut(s)	259, 309, 321
MnlI	CCTC	1 cut(s)	19
MroXI	GAANNNNTTC	1 cut(s)	111
MseI	TTAA	2 cut(s)	69, 315
MspR9I	CCNGG	1 cut(s)	273
Mva1269I	GAATGC	1 cut(s)	205
MvaI	CCWGG	1 cut(s)	273
MwoI	GCNNNNNNNGC	2 cut(s)	200, 209
NdeII	GATC	1 cut(s)	94
NlaIII	CATG	2 cut(s)	168, 185
NlaIV	GGNNCC	1 cut(s)	225
NspI	RCATGY	1 cut(s)	168
PaqCI	CACCTGC	1 cut(s)	89
PciI	ACATGT	1 cut(s)	164
PctI	GAATGC	1 cut(s)	205
PdmI	GAANNNNTTC	1 cut(s)	111
PfeI	GAWTC	1 cut(s)	112
PfoI	TCCNGGA	1 cut(s)	271
PkrI	GCNGC	1 cut(s)	328
PscI	ACATGT	1 cut(s)	164
Psp6I	CCWGG	1 cut(s)	271
PspGI	CCWGG	1 cut(s)	271
PspN4I	GGNNCC	1 cut(s)	225
SaqAI	TTAA	2 cut(s)	69, 315
SatI	GCNGC	1 cut(s)	327
Sau3AI	GATC	1 cut(s)	94
ScrFI	CCNGG	1 cut(s)	273
SetI	ASST	7 cut(s)	55, 83, 90, 121, 196, 214, 289
SfaNI	GCATC	2 cut(s)	66, 181
Sse9I	AATT	3 cut(s)	259, 309, 321
SsiI	CCGC	1 cut(s)	5
StyD4I	CCNGG	1 cut(s)	271
TaaI	ACNGT	1 cut(s)	279
TaiI	ACGT	1 cut(s)	121
TaqI	TCGA	1 cut(s)	151
TasI	AATT	3 cut(s)	259, 309, 321
TfiI	GAWTC	1 cut(s)	112
Tru1I	TTAA	2 cut(s)	69, 315
Tru9I	TTAA	2 cut(s)	69, 315
TseI	GCWGC	1 cut(s)	326
TspDTI	ATGAA	3 cut(s)	33, 137, 144
TspGWI	ACGGA	1 cut(s)	220
XagI	CCTNNNNNAGG	1 cut(s)	270
XapI	RAATTY	2 cut(s)	259, 309
XceI	RCATGY	1 cut(s)	168
XmnI	GAANNNNTTC	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.