Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0004930

Physical Location & Seq

Genomic Coordinates Forward (+)

19478294 .. 19480084

Gene Structure 1791 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g23840.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGACCATGAACATGATGCCAATGTGCAAACAAGCACAGGCGTTACCAAACGTACAACTATCCAATATTGGCGGCGGGCATAGCCACAACCTCCTCGATGTGTTCAATCCCCGCCGCCAAAAGGATAAAGTGGTGATCGTAATGGGCGCCACCGGGACAGGCAAGTCCAAGCTCTCTATCGACCTAGCCACCCGCTTCCCGGCAGAAATCATCAACTCCGACAAAATGCAATTCTACGAGGGCCTTGACATAGCCACCAACAAAATAACACCACAAGAACAACGCGACGTCCCCCACCATTTGCTTGGAGTTTTAGACCCCAATGTGGATTTCTCTGCCGACGACTTCTCTAACGTCACCTGCCTCGCCGTCGACTCAATCCTGAACCGGAACCGACTTCCAATCATCGTTGGAGGCTCGAACTCGTACATAGAGACCTTGGTTGACGGCTACGATAACATGTTCCGGTCCAGATATGACTGCTGCTTTCTCTGGGTGGATGTATCCTTATCCGTTTTGCATTCTTTTGTTTCCGACCGTGTCGATCAGATGGTGGAGAATGGACTGGTGGAGGAGGTGAGAGAGTTCTTTGATCCCAATGCGGATTACACAAAAGGCATCAGAAGGGCCATCGGTGTGCCGGAGTTCGATGACTTTTTCCGGTATGGTCCGTTTTTGGATGATGAAACTAGAGCTGGGTTACTTGAACGAGCGATCAACGAAGTGAAAGACAATACGTGCAAGTTGGCATGTAGGCAGTTGGAGAAGATTCGAAGACTTAGGAATAAAGGGTGGAGTCTGCATCAACTTGATGCCACTGAGGTGTTCCAAAAGCGCGGCAAGGAGTCCCATGAGGCCTGGGACAGGCTGGTTTCGGGGCCAAGCGCCATGATTGTTCGCCAGTTTCTCTACAATAACAAGGCCGAAGTTACCACAAATGCCATTAGGGTTCCGGTGGCAATAGAAACTGCAGCCCTTGCCGCTGCAACTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009058 GO:0009308 GO:0009451 GO:0009536 GO:0009690 GO:0009691 GO:0009824 GO:0009987 GO:0010467 GO:0010817 GO:0016070 GO:0016740 GO:0016765 GO:0034470 GO:0034641 GO:0034660 GO:0034754 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0052381 GO:0052622 GO:0052623 GO:0065007 GO:0065008 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00908 ko01100 ko01110 map00908 map01100 map01110

Pfam Domains

Protein Families

IPPT

Protein Analysis

332

Amino Acids

37.31

Weight (kDa)

5.71

Isoelectric Point (pI)

35.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IPT	PF01745	43 - 194	4.2e-07	Isopentenyl transferase
IPPT	PF01715	77 - 153	2.1e-22	IPP transferase
IPPT	PF01715	157 - 258	1.2e-13	IPP transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004930)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63110
fragaria_vesca	FvH4_2g23840
malus_domestica	MD00G1084500.v1.1 MD03G1267900.v1.1 MD11G1288800.v1.1
prunus_persica	Prupe.5G047700_v2.0.a1 Prupe.8G243600_v2.0.a1
pyrus_communis	pycom06g03440
rosa_chinensis	RchiOBHm_Chr6g0291431 RchiOBHm_Chr6g0308751
rosa_laevigata	RLG00000010623 RLG00000010625 RLG00000012115
rosa_multiflora	Rmu_sc0003735.1_g000032
rosa_roxburghii	Rroxscaffold_7G00159980 Rroxscaffold_7G00176060
rosa_rugosa	Rorug06G0219300 Rorug06G0368000
rosa_samantha	Rh6AG331600 Rh6AG479000 Rh6AG479100 Rh6BG338500 Rh6BG488600 Rh6BG488700 Rh6CG344700 Rh6CG493900 Rh6DG331600 Rh6DG479500
rosa_wichuraiana	Rw6G028790 Rw6G041750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	368
AasI	GACNNNNNNGTC	1 cut(s)	163
AatII	GACGTC	1 cut(s)	291
Acc36I	ACCTGC	1 cut(s)	368
AccB1I	GGYRCC	1 cut(s)	146
AccI	GTMKAC	1 cut(s)	372
AccII	CGCG	2 cut(s)	285, 837
AciI	CCGC	8 cut(s)	72, 75, 112, 115, 193, 602, 837, 981
AclWI	GGATC	1 cut(s)	587
AcyI	GRCGYC	2 cut(s)	147, 288
AfaI	GTAC	2 cut(s)	54, 428
AfiI	CCNNNNNNNGG	4 cut(s)	121, 199, 325, 864
AflIII	ACRYGT	1 cut(s)	459
AgsI	TTSAA	2 cut(s)	106, 707
AjnI	CCWGG	1 cut(s)	857
AjuI	GAANNNNNNNTTGG	2 cut(s)	314, 346
AleI	CACNNNNGTG	1 cut(s)	821
AluBI	AGCT	2 cut(s)	172, 695
AluI	AGCT	2 cut(s)	172, 695
Alw26I	GTCTC	1 cut(s)	428
AlwI	GGATC	1 cut(s)	587
AoxI	GGCC	5 cut(s)	241, 627, 855, 878, 921
ApeKI	GCWGC	3 cut(s)	483, 971, 983
AspLEI	GCGC	3 cut(s)	149, 837, 887
AspS9I	GGNCC	5 cut(s)	241, 468, 627, 668, 878
AsuC2I	CCSGG	2 cut(s)	154, 200
AsuHPI	GGTGA	3 cut(s)	145, 349, 589
AsuII	TTCGAA	1 cut(s)	772
AvaII	GGWCC	2 cut(s)	468, 668
BanI	GGYRCC	1 cut(s)	146
BbsI	GAAGAC	1 cut(s)	781
BbvI	GCAGC	3 cut(s)	470, 970, 983
BccI	CCATC	2 cut(s)	544, 638
BceAI	ACGGC	2 cut(s)	353, 463
BciT130I	CCWGG	1 cut(s)	859
BciVI	GTATCC	1 cut(s)	514
BcnI	CCSGG	2 cut(s)	154, 200
BcoDI	GTCTC	1 cut(s)	428
BfaI	CTAG	3 cut(s)	185, 690, 994
BfmI	CTRYAG	1 cut(s)	969
BfoI	RGCGCY	2 cut(s)	150, 888
BfuAI	ACCTGC	1 cut(s)	368
BfuI	GTATCC	1 cut(s)	514
BisI	GCNGC	7 cut(s)	73, 115, 484, 838, 972, 981, 984
BlsI	GCNGC	7 cut(s)	74, 116, 485, 839, 973, 982, 985
Bme1390I	CCNGG	3 cut(s)	154, 200, 859
Bme18I	GGWCC	2 cut(s)	468, 668
BmgT120I	GGNCC	5 cut(s)	241, 468, 627, 668, 878
BmiI	GGNNCC	4 cut(s)	148, 392, 879, 951
BmrFI	CCNGG	3 cut(s)	154, 200, 859
BmsI	GCATC	4 cut(s)	6, 627, 802, 811
BpiI	GAAGAC	1 cut(s)	781
Bpu14I	TTCGAA	1 cut(s)	772
BpuMI	CCSGG	2 cut(s)	154, 200
BsaAI	YACGTR	1 cut(s)	738
BsaHI	GRCGYC	2 cut(s)	147, 288
BsaI	GGTCTC	1 cut(s)	428
BsaJI	CCNNGG	2 cut(s)	438, 858
BsaWI	WCCGGW	4 cut(s)	387, 465, 660, 952
Bsc4I	CCNNNNNNNGG	4 cut(s)	121, 199, 325, 864
Bse1I	ACTGG	2 cut(s)	570, 901
BseBI	CCWGG	1 cut(s)	859
BseDI	CCNNGG	2 cut(s)	438, 858
BseGI	GGATG	2 cut(s)	505, 685
BseLI	CCNNNNNNNGG	4 cut(s)	121, 199, 325, 864
BseMII	CTCAG	1 cut(s)	810
BseNI	ACTGG	2 cut(s)	570, 901
BseRI	GAGGAG	2 cut(s)	83, 587
BseXI	GCAGC	3 cut(s)	470, 970, 983
BseYI	CCCAGC	1 cut(s)	695
Bsh1236I	CGCG	2 cut(s)	285, 837
Bsh1285I	CGRYCG	1 cut(s)	538
BshFI	GGCC	5 cut(s)	243, 629, 857, 880, 923
BshNI	GGYRCC	1 cut(s)	146
BsiEI	CGRYCG	1 cut(s)	538
BsiSI	CCGG	7 cut(s)	153, 200, 388, 466, 641, 661, 953
BslFI	GGGAC	4 cut(s)	169, 275, 832, 875
BslI	CCNNNNNNNGG	4 cut(s)	121, 199, 325, 864
BsmAI	GTCTC	1 cut(s)	428
BsmFI	GGGAC	4 cut(s)	169, 275, 832, 875
BsmI	GAATGC	1 cut(s)	520
BsnI	GGCC	5 cut(s)	243, 629, 857, 880, 923
Bso31I	GGTCTC	1 cut(s)	428
Bsp119I	TTCGAA	1 cut(s)	772
Bsp143I	GATC	4 cut(s)	135, 544, 592, 714
BspACI	CCGC	8 cut(s)	72, 75, 112, 115, 193, 602, 837, 981
BspANI	GGCC	5 cut(s)	243, 629, 857, 880, 923
BspCNI	CTCAG	1 cut(s)	811
BspFNI	CGCG	2 cut(s)	285, 837
BspLI	GGNNCC	4 cut(s)	148, 392, 879, 951
BspMAI	CTGCAG	1 cut(s)	973
BspMI	ACCTGC	1 cut(s)	368
BspPI	GGATC	1 cut(s)	587
BspT104I	TTCGAA	1 cut(s)	772
BspT107I	GGYRCC	1 cut(s)	146
BspTNI	GGTCTC	1 cut(s)	428
BsrI	ACTGG	2 cut(s)	570, 901
BssECI	CCNNGG	2 cut(s)	438, 858
BssMI	GATC	4 cut(s)	135, 544, 592, 714
BssNI	GRCGYC	2 cut(s)	147, 288
BssT1I	CCWWGG	1 cut(s)	438
Bst2UI	CCWGG	1 cut(s)	859
Bst4CI	ACNGT	1 cut(s)	539
BstACI	GRCGYC	2 cut(s)	147, 288
BstAPI	GCANNNNNTGC	1 cut(s)	977
BstBAI	YACGTR	1 cut(s)	738
BstBI	TTCGAA	1 cut(s)	772
BstC8I	GCNNGC	1 cut(s)	77
BstDEI	CTNAG	2 cut(s)	779, 819
BstENI	CCTNNNNNAGG	1 cut(s)	862
BstF5I	GGATG	2 cut(s)	505, 685
BstFNI	CGCG	2 cut(s)	285, 837
BstH2I	RGCGCY	2 cut(s)	150, 888
BstHHI	GCGC	3 cut(s)	149, 837, 887
BstKTI	GATC	4 cut(s)	138, 547, 595, 717
BstMAI	GTCTC	1 cut(s)	428
BstMBI	GATC	4 cut(s)	135, 544, 592, 714
BstMCI	CGRYCG	1 cut(s)	538
BstMWI	GCNNNNNNNGC	3 cut(s)	81, 977, 980
BstNI	CCWGG	1 cut(s)	859
BstNSI	RCATGY	2 cut(s)	463, 753
BstSCI	CCNGG	3 cut(s)	152, 198, 857
BstSFI	CTRYAG	1 cut(s)	969
BstUI	CGCG	2 cut(s)	285, 837
BstV1I	GCAGC	3 cut(s)	470, 970, 983
BstV2I	GAAGAC	1 cut(s)	781
BstXI	CCANNNNNNTGG	1 cut(s)	305
BsuI	GTATCC	1 cut(s)	514
BsuRI	GGCC	5 cut(s)	243, 629, 857, 880, 923
BtsCI	GGATG	2 cut(s)	505, 685
BtsIMutI	CAGTG	1 cut(s)	816
BveI	ACCTGC	1 cut(s)	368
Cac8I	GCNNGC	1 cut(s)	77
CfoI	GCGC	3 cut(s)	149, 837, 887
Cfr13I	GGNCC	5 cut(s)	241, 468, 627, 668, 878
Csp6I	GTAC	2 cut(s)	53, 427
CviAII	CATG	6 cut(s)	7, 13, 460, 750, 851, 889
CviQI	GTAC	2 cut(s)	53, 427
DdeI	CTNAG	2 cut(s)	779, 819
DinI	GGCGCC	1 cut(s)	148
DpnI	GATC	4 cut(s)	137, 546, 594, 716
DpnII	GATC	4 cut(s)	135, 544, 592, 714
DrdI	GACNNNNNNGTC	1 cut(s)	163
DseDI	GACNNNNNNGTC	1 cut(s)	163
Eco130I	CCWWGG	1 cut(s)	438
Eco147I	AGGCCT	1 cut(s)	857
Eco31I	GGTCTC	1 cut(s)	428
Eco47I	GGWCC	2 cut(s)	468, 668
EcoNI	CCTNNNNNAGG	1 cut(s)	862
EcoO109I	RGGNCCY	1 cut(s)	241
EcoRII	CCWGG	1 cut(s)	857
EcoT14I	CCWWGG	1 cut(s)	438
EgeI	GGCGCC	1 cut(s)	148
EheI	GGCGCC	1 cut(s)	148
ErhI	CCWWGG	1 cut(s)	438
FaeI	CATG	6 cut(s)	10, 16, 463, 753, 854, 892
FaqI	GGGAC	4 cut(s)	169, 275, 832, 875
FatI	CATG	6 cut(s)	6, 12, 459, 749, 850, 888
FauI	CCCGC	3 cut(s)	68, 119, 200
FblI	GTMKAC	1 cut(s)	372
Fnu4HI	GCNGC	7 cut(s)	73, 115, 484, 838, 972, 981, 984
FokI	GGATG	2 cut(s)	512, 692
Fsp4HI	GCNGC	7 cut(s)	73, 115, 484, 838, 972, 981, 984
FspBI	CTAG	3 cut(s)	185, 690, 994
GlaI	GCGC	3 cut(s)	148, 836, 886
GluI	GCNGC	7 cut(s)	73, 115, 484, 838, 972, 981, 984
GsaI	CCCAGC	1 cut(s)	699
HaeII	RGCGCY	2 cut(s)	150, 888
HaeIII	GGCC	5 cut(s)	243, 629, 857, 880, 923
HapII	CCGG	7 cut(s)	153, 200, 388, 466, 641, 661, 953
HhaI	GCGC	3 cut(s)	149, 837, 887
Hin1I	GRCGYC	2 cut(s)	147, 288
Hin1II	CATG	6 cut(s)	10, 16, 463, 753, 854, 892
Hin6I	GCGC	3 cut(s)	147, 835, 885
HinP1I	GCGC	3 cut(s)	147, 835, 885
HincII	GTYRAC	2 cut(s)	373, 445
HindII	GTYRAC	2 cut(s)	373, 445
HinfI	GANTC	4 cut(s)	374, 769, 796, 845
HpaII	CCGG	7 cut(s)	153, 200, 388, 466, 641, 661, 953
HphI	GGTGA	3 cut(s)	145, 349, 589
Hpy166II	GTNNAC	2 cut(s)	373, 445
Hpy188I	TCNGA	4 cut(s)	220, 535, 549, 623
Hpy188III	TCNNGA	2 cut(s)	382, 471
Hpy8I	GTNNAC	2 cut(s)	373, 445
Hpy99I	CGWCG	3 cut(s)	290, 344, 374
HpyAV	CCTTC	1 cut(s)	618
HpyCH4III	ACNGT	1 cut(s)	539
HpyCH4IV	ACGT	4 cut(s)	51, 288, 354, 737
HpyCH4V	TGCA	7 cut(s)	27, 229, 520, 741, 802, 971, 986
HpyF10VI	GCNNNNNNNGC	3 cut(s)	81, 977, 980
HpyF3I	CTNAG	2 cut(s)	779, 819
HpySE526I	ACGT	4 cut(s)	51, 288, 354, 737
Hsp92I	GRCGYC	2 cut(s)	147, 288
Hsp92II	CATG	6 cut(s)	10, 16, 463, 753, 854, 892
HspAI	GCGC	3 cut(s)	147, 835, 885
KasI	GGCGCC	1 cut(s)	146
Kzo9I	GATC	4 cut(s)	135, 544, 592, 714
Lsp1109I	GCAGC	3 cut(s)	470, 970, 983
LweI	GCATC	4 cut(s)	6, 627, 802, 811
MaeI	CTAG	3 cut(s)	185, 690, 994
MaeII	ACGT	4 cut(s)	51, 288, 354, 737
MaeIII	GTNAC	4 cut(s)	42, 355, 699, 928
MalI	GATC	4 cut(s)	137, 546, 594, 716
MboI	GATC	4 cut(s)	135, 544, 592, 714
MboII	GAAGA	2 cut(s)	778, 786
MluCI	AATT	1 cut(s)	230
Mly113I	GGCGCC	1 cut(s)	147
MlyI	GAGTC	3 cut(s)	368, 805, 854
MmeI	TCCRAC	4 cut(s)	243, 391, 558, 741
MnlI	CCTC	9 cut(s)	101, 104, 232, 374, 407, 565, 568, 814, 847
MslI	CAYNNNNRTG	3 cut(s)	11, 635, 821
MspA1I	CMGCKG	1 cut(s)	983
MspI	CCGG	7 cut(s)	153, 200, 388, 466, 641, 661, 953
MspR9I	CCNGG	3 cut(s)	154, 200, 859
Mva1269I	GAATGC	1 cut(s)	520
MvaI	CCWGG	1 cut(s)	859
MvnI	CGCG	2 cut(s)	285, 837
MwoI	GCNNNNNNNGC	3 cut(s)	81, 977, 980
NarI	GGCGCC	1 cut(s)	147
NciI	CCSGG	2 cut(s)	154, 200
NdeII	GATC	4 cut(s)	135, 544, 592, 714
NlaIII	CATG	6 cut(s)	10, 16, 463, 753, 854, 892
NlaIV	GGNNCC	4 cut(s)	148, 392, 879, 951
NmuCI	GTSAC	1 cut(s)	355
NspI	RCATGY	2 cut(s)	463, 753
NspV	TTCGAA	1 cut(s)	772
OliI	CACNNNNGTG	1 cut(s)	821
PaqCI	CACCTGC	1 cut(s)	368
PceI	AGGCCT	1 cut(s)	857
PciI	ACATGT	1 cut(s)	459
PctI	GAATGC	1 cut(s)	520
PfeI	GAWTC	1 cut(s)	769
PflFI	GACNNNGTC	1 cut(s)	539
PkrI	GCNGC	7 cut(s)	74, 116, 485, 839, 973, 982, 985
PleI	GAGTC	3 cut(s)	368, 804, 853
PluTI	GGCGCC	1 cut(s)	150
PpsI	GAGTC	3 cut(s)	368, 804, 853
Ppu21I	YACGTR	1 cut(s)	738
PscI	ACATGT	1 cut(s)	459
Psp6I	CCWGG	1 cut(s)	857
PspFI	CCCAGC	1 cut(s)	695
PspGI	CCWGG	1 cut(s)	857
PspN4I	GGNNCC	4 cut(s)	148, 392, 879, 951
PspPI	GGNCC	5 cut(s)	241, 468, 627, 668, 878
PstI	CTGCAG	1 cut(s)	973
PsyI	GACNNNGTC	1 cut(s)	539
RsaI	GTAC	2 cut(s)	54, 428
RsaNI	GTAC	2 cut(s)	53, 427
RseI	CAYNNNNRTG	3 cut(s)	11, 635, 821
SalI	GTCGAC	1 cut(s)	371
SatI	GCNGC	7 cut(s)	73, 115, 484, 838, 972, 981, 984
Sau3AI	GATC	4 cut(s)	135, 544, 592, 714
Sau96I	GGNCC	5 cut(s)	241, 468, 627, 668, 878
SchI	GAGTC	3 cut(s)	368, 805, 854
ScrFI	CCNGG	3 cut(s)	154, 200, 859
SfaNI	GCATC	4 cut(s)	6, 627, 802, 811
SfcI	CTRYAG	1 cut(s)	969
SfoI	GGCGCC	1 cut(s)	148
SfuI	TTCGAA	1 cut(s)	772
SinI	GGWCC	2 cut(s)	468, 668
SmiMI	CAYNNNNRTG	3 cut(s)	11, 635, 821
Sse9I	AATT	1 cut(s)	230
SseBI	AGGCCT	1 cut(s)	857
SsiI	CCGC	8 cut(s)	72, 75, 112, 115, 193, 602, 837, 981
SspDI	GGCGCC	1 cut(s)	146
SspI	AATATT	1 cut(s)	67
SspMI	CTAG	3 cut(s)	185, 690, 994
StuI	AGGCCT	1 cut(s)	857
StyD4I	CCNGG	3 cut(s)	152, 198, 857
StyI	CCWWGG	1 cut(s)	438
TaaI	ACNGT	1 cut(s)	539
TaiI	ACGT	4 cut(s)	54, 291, 357, 740
TaqI	TCGA	7 cut(s)	96, 180, 372, 419, 543, 648, 772
TasI	AATT	1 cut(s)	230
TauI	GCSGC	4 cut(s)	75, 117, 840, 983
TfiI	GAWTC	1 cut(s)	769
TscAI	CASTG	1 cut(s)	823
TseFI	GTSAC	1 cut(s)	355
TseI	GCWGC	3 cut(s)	483, 971, 983
Tsp45I	GTSAC	1 cut(s)	355
TspDTI	ATGAA	2 cut(s)	23, 699
TspGWI	ACGGA	2 cut(s)	502, 660
TspRI	CASTG	1 cut(s)	823
Tth111I	GACNNNGTC	1 cut(s)	539
VpaK11BI	GGWCC	2 cut(s)	468, 668
XagI	CCTNNNNNAGG	1 cut(s)	862
XceI	RCATGY	2 cut(s)	463, 753
XcmI	CCANNNNNNNNNTGG	1 cut(s)	302
XmiI	GTMKAC	1 cut(s)	372
XspI	CTAG	3 cut(s)	185, 690, 994
ZraI	GACGTC	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.