Rh6CG344700

Adenylate isopentenyltransferase 3

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
Physical Location & Seq
Forward (+)
53555173 .. 53556966
1794 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG344700.1

Sequence Viewer

Length: 999 bp
ATGACCATCAACATGATGACAATGTGCAAACAAACACAGACGTTACCAAACGTACCACTGTCCATTGGCGGCGGGCACAGCCACAACCTCCTCGATGTGTTGAATGTCCACCGCCAGAAGGATAAGGTGGTGATCGTAATGGGCGCCACCGGGACGGGCAAGTCAAAGCTCTCCATCGACCTGGCCACCCGCTTCCCGGCCGAAATCATCAACTCGGACAAAATGCAACTCTACGAGGGCCTTGACATCGCCACCAACAAAATATCACCTCAAGCACAACGCGGCGTCCCCCACCATTTGCTTGGAGTTTTAGACCCCAATGCGGATTTCTCTGCCGACGACTTCTGTGGGGTCACCTGCCTCGCCGTCGAGTCGATCTTAGACCGTGACCGGCTTCCAATCATCGTTGGAGGCTCGAACTCATACATAGAGGCGTTGATCGACGGCTACGATAAGATGTTCCGGTCAAGATATGACTGCTGCTTTCTCTGGGTGGATGTATCCTTACCCGTTTTGCAATCTTTTGTTTCCGACCGGGTCGATCAGATGGTGGAGAACGGAATGGTGGAGGAGGTGAGACAGTTCTTTGATCCGAATGCGGATTATACAAAAGGGATCAGAAGGGCTATCGGTGTGCCGGAGTTTGATGACTTTTTCCGGAATGGTCCGTCTTTGGATGAGGAAACTAGAGCCTTGTTACTTGAACAAGCGATAATTCAAGTAAAAGACAATACATGCAAGTTGGCATGTAGGCAATTGGAGAAGATTCGAAGACTTAGGAATAAAGGGTGGAGTCTGCATCCACTTGATGCCACTGAGGTGTACCGGAAGCGTGGCAAGGAGGCTGATGAGGCCTGGGACAGGCTGGTTTCGGGGCCAAGCTCAGTGATTGTTCGCCAATTTATTTACAATGTCAAGGCCGAAGTTCCCACAAATCTCACTGCCATCAGGGTTCCGGCCGCAATGGAAACTGCAGCTCTTGCGGCTGCAACTTACTAG

Protein Analysis

332

Amino Acids

37.04

Weight (kDa)

5.76

Isoelectric Point (pI)

35.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IPT PF01745 42 - 185 3.5e-06 Isopentenyl transferase
IPPT PF01715 76 - 152 9.2e-22 IPP transferase
IPPT PF01715 156 - 257 2.2e-13 IPP transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 365
AasI GACNNNNNNGTC 1 cut(s) 160
Acc36I ACCTGC 1 cut(s) 365
AccB1I GGYRCC 1 cut(s) 143
AccII CGCG 1 cut(s) 282
AccIII TCCGGA 1 cut(s) 657
AciI CCGC 9 cut(s) 69, 72, 112, 190, 282, 323, 599, 960, 983
AclWI GGATC 2 cut(s) 584, 623
AcoI YGGCCR 3 cut(s) 183, 198, 957
AcyI GRCGYC 2 cut(s) 144, 285
AfaI GTAC 2 cut(s) 54, 824
AfiI CCNNNNNNNGG 4 cut(s) 118, 196, 322, 861
AgsI TTSAA 3 cut(s) 103, 704, 719
AjnI CCWGG 2 cut(s) 180, 854
AjuI GAANNNNNNNTTGG 2 cut(s) 311, 343
AleI CACNNNNGTG 1 cut(s) 818
AluBI AGCT 3 cut(s) 169, 882, 977
AluI AGCT 3 cut(s) 169, 882, 977
Alw26I GTCTC 1 cut(s) 571
AlwI GGATC 2 cut(s) 584, 623
Aor13HI TCCGGA 1 cut(s) 657
AoxI GGCC 7 cut(s) 183, 198, 238, 852, 875, 918, 957
ApeKI GCWGC 3 cut(s) 480, 974, 986
AspLEI GCGC 1 cut(s) 146
AspS9I GGNCC 3 cut(s) 238, 665, 875
AsuC2I CCSGG 3 cut(s) 151, 197, 536
AsuHPI GGTGA 4 cut(s) 142, 258, 346, 586
AsuII TTCGAA 1 cut(s) 769
AvaII GGWCC 1 cut(s) 665
BaeGI GKGCMC 1 cut(s) 78
BalI TGGCCA 1 cut(s) 185
BanI GGYRCC 1 cut(s) 143
BbsI GAAGAC 1 cut(s) 778
BbvI GCAGC 3 cut(s) 467, 973, 986
BccI CCATC 4 cut(s) 14, 182, 541, 953
BceAI ACGGC 2 cut(s) 350, 460
BciT130I CCWGG 2 cut(s) 182, 856
BciVI GTATCC 1 cut(s) 511
BcnI CCSGG 3 cut(s) 151, 197, 536
BcoDI GTCTC 1 cut(s) 571
BfaI CTAG 2 cut(s) 687, 997
BfmI CTRYAG 1 cut(s) 972
BfoI RGCGCY 1 cut(s) 147
BfuAI ACCTGC 1 cut(s) 365
BfuI GTATCC 1 cut(s) 511
BisI GCNGC 7 cut(s) 70, 283, 481, 960, 975, 984, 987
BlsI GCNGC 7 cut(s) 71, 284, 482, 961, 976, 985, 988
Bme1390I CCNGG 5 cut(s) 151, 182, 197, 536, 856
Bme18I GGWCC 1 cut(s) 665
BmgT120I GGNCC 3 cut(s) 238, 665, 875
BmiI GGNNCC 3 cut(s) 145, 876, 954
BmrFI CCNGG 5 cut(s) 151, 182, 197, 536, 856
BmsI GCATC 2 cut(s) 799, 808
BpiI GAAGAC 1 cut(s) 778
Bpu14I TTCGAA 1 cut(s) 769
BpuEI CTTGAG 1 cut(s) 255
BpuMI CCSGG 3 cut(s) 151, 197, 536
BsaHI GRCGYC 2 cut(s) 144, 285
BsaJI CCNNGG 1 cut(s) 855
BsaWI WCCGGW 3 cut(s) 462, 657, 825
Bsc4I CCNNNNNNNGG 4 cut(s) 118, 196, 322, 861
Bse118I RCCGGY 1 cut(s) 390
Bse3DI GCAATG 1 cut(s) 969
BseAI TCCGGA 1 cut(s) 657
BseBI CCWGG 2 cut(s) 182, 856
BseDI CCNNGG 1 cut(s) 855
BseGI GGATG 3 cut(s) 502, 682, 799
BseLI CCNNNNNNNGG 4 cut(s) 118, 196, 322, 861
BseMI GCAATG 1 cut(s) 969
BseMII CTCAG 2 cut(s) 807, 897
BseRI GAGGAG 2 cut(s) 80, 584
BseSI GKGCMC 1 cut(s) 78
BseX3I CGGCCG 2 cut(s) 198, 957
BseXI GCAGC 3 cut(s) 467, 973, 986
Bsh1236I CGCG 1 cut(s) 282
Bsh1285I CGRYCG 3 cut(s) 201, 535, 960
BshFI GGCC 7 cut(s) 185, 200, 240, 854, 877, 920, 959
BshNI GGYRCC 1 cut(s) 143
BsiEI CGRYCG 3 cut(s) 201, 535, 960
BsiSI CCGG 9 cut(s) 150, 197, 391, 463, 535, 638, 658, 826, 956
BslFI GGGAC 3 cut(s) 166, 272, 872
BslI CCNNNNNNNGG 4 cut(s) 118, 196, 322, 861
BsmAI GTCTC 1 cut(s) 571
BsmFI GGGAC 3 cut(s) 166, 272, 872
BsmI GAATGC 1 cut(s) 601
BsnI GGCC 7 cut(s) 185, 200, 240, 854, 877, 920, 959
Bsp119I TTCGAA 1 cut(s) 769
Bsp1286I GDGCHC 1 cut(s) 78
Bsp13I TCCGGA 1 cut(s) 657
Bsp143I GATC 6 cut(s) 132, 375, 438, 541, 589, 615
BspACI CCGC 9 cut(s) 69, 72, 112, 190, 282, 323, 599, 960, 983
BspANI GGCC 7 cut(s) 185, 200, 240, 854, 877, 920, 959
BspCNI CTCAG 2 cut(s) 808, 896
BspEI TCCGGA 1 cut(s) 657
BspFNI CGCG 1 cut(s) 282
BspLI GGNNCC 3 cut(s) 145, 876, 954
BspMAI CTGCAG 1 cut(s) 976
BspMI ACCTGC 1 cut(s) 365
BspPI GGATC 2 cut(s) 584, 623
BspT104I TTCGAA 1 cut(s) 769
BspT107I GGYRCC 1 cut(s) 143
BsrDI GCAATG 1 cut(s) 969
BsrFI RCCGGY 1 cut(s) 390
BssAI RCCGGY 1 cut(s) 390
BssECI CCNNGG 1 cut(s) 855
BssMI GATC 6 cut(s) 132, 375, 438, 541, 589, 615
BssNI GRCGYC 2 cut(s) 144, 285
Bst2UI CCWGG 2 cut(s) 182, 856
Bst4CI ACNGT 3 cut(s) 60, 386, 582
BstACI GRCGYC 2 cut(s) 144, 285
BstAPI GCANNNNNTGC 1 cut(s) 980
BstBI TTCGAA 1 cut(s) 769
BstC8I GCNNGC 1 cut(s) 74
BstDEI CTNAG 4 cut(s) 379, 776, 816, 883
BstEII GGTNACC 1 cut(s) 352
BstENI CCTNNNNNAGG 1 cut(s) 859
BstF5I GGATG 3 cut(s) 502, 682, 799
BstFNI CGCG 1 cut(s) 282
BstH2I RGCGCY 1 cut(s) 147
BstHHI GCGC 1 cut(s) 146
BstKTI GATC 6 cut(s) 135, 378, 441, 544, 592, 618
BstMAI GTCTC 1 cut(s) 571
BstMBI GATC 6 cut(s) 132, 375, 438, 541, 589, 615
BstMCI CGRYCG 3 cut(s) 201, 535, 960
BstMWI GCNNNNNNNGC 4 cut(s) 78, 851, 980, 983
BstNI CCWGG 2 cut(s) 182, 856
BstNSI RCATGY 2 cut(s) 738, 750
BstPI GGTNACC 1 cut(s) 352
BstSCI CCNGG 5 cut(s) 149, 180, 195, 534, 854
BstSFI CTRYAG 1 cut(s) 972
BstSLI GKGCMC 1 cut(s) 78
BstUI CGCG 1 cut(s) 282
BstV1I GCAGC 3 cut(s) 467, 973, 986
BstV2I GAAGAC 1 cut(s) 778
BstXI CCANNNNNNTGG 2 cut(s) 181, 302
BstZI CGGCCG 2 cut(s) 198, 957
BsuI GTATCC 1 cut(s) 511
BsuRI GGCC 7 cut(s) 185, 200, 240, 854, 877, 920, 959
BtgZI GCGATG 1 cut(s) 232
BtsCI GGATG 3 cut(s) 502, 682, 799
BtsI GCAGTG 1 cut(s) 939
BtsIMutI CAGTG 4 cut(s) 56, 813, 891, 939
BveI ACCTGC 1 cut(s) 365
Cac8I GCNNGC 1 cut(s) 74
CfoI GCGC 1 cut(s) 146
Cfr10I RCCGGY 1 cut(s) 390
Cfr13I GGNCC 3 cut(s) 238, 665, 875
CseI GACGC 1 cut(s) 274
Csp6I GTAC 2 cut(s) 53, 823
CviAII CATG 3 cut(s) 13, 735, 747
CviQI GTAC 2 cut(s) 53, 823
DdeI CTNAG 4 cut(s) 379, 776, 816, 883
DinI GGCGCC 1 cut(s) 145
DpnI GATC 6 cut(s) 134, 377, 440, 543, 591, 617
DpnII GATC 6 cut(s) 132, 375, 438, 541, 589, 615
DrdI GACNNNNNNGTC 1 cut(s) 160
DseDI GACNNNNNNGTC 1 cut(s) 160
EaeI YGGCCR 3 cut(s) 183, 198, 957
EagI CGGCCG 2 cut(s) 198, 957
EclXI CGGCCG 2 cut(s) 198, 957
Eco147I AGGCCT 1 cut(s) 854
Eco47I GGWCC 1 cut(s) 665
Eco52I CGGCCG 2 cut(s) 198, 957
Eco91I GGTNACC 1 cut(s) 352
EcoNI CCTNNNNNAGG 1 cut(s) 859
EcoO109I RGGNCCY 1 cut(s) 238
EcoO65I GGTNACC 1 cut(s) 352
EcoRII CCWGG 2 cut(s) 180, 854
EgeI GGCGCC 1 cut(s) 145
EheI GGCGCC 1 cut(s) 145
FaeI CATG 3 cut(s) 16, 738, 750
FaiI YATR 7 cut(s) 14, 424, 428, 474, 606, 736, 748
FaqI GGGAC 3 cut(s) 166, 272, 872
FatI CATG 3 cut(s) 12, 734, 746
FauI CCCGC 2 cut(s) 65, 197
Fnu4HI GCNGC 7 cut(s) 70, 283, 481, 960, 975, 984, 987
FokI GGATG 3 cut(s) 509, 689, 786
Fsp4HI GCNGC 7 cut(s) 70, 283, 481, 960, 975, 984, 987
FspBI CTAG 2 cut(s) 687, 997
GlaI GCGC 1 cut(s) 145
GluI GCNGC 7 cut(s) 70, 283, 481, 960, 975, 984, 987
HaeII RGCGCY 1 cut(s) 147
HaeIII GGCC 7 cut(s) 185, 200, 240, 854, 877, 920, 959
HapII CCGG 9 cut(s) 150, 197, 391, 463, 535, 638, 658, 826, 956
HgaI GACGC 1 cut(s) 274
HhaI GCGC 1 cut(s) 146
Hin1I GRCGYC 2 cut(s) 144, 285
Hin1II CATG 3 cut(s) 16, 738, 750
Hin6I GCGC 1 cut(s) 144
HinP1I GCGC 1 cut(s) 144
HinfI GANTC 3 cut(s) 371, 766, 793
HpaII CCGG 9 cut(s) 150, 197, 391, 463, 535, 638, 658, 826, 956
HphI GGTGA 4 cut(s) 142, 258, 346, 586
Hpy166II GTNNAC 2 cut(s) 109, 823
Hpy188I TCNGA 5 cut(s) 217, 532, 546, 594, 620
Hpy188III TCNNGA 2 cut(s) 468, 658
Hpy8I GTNNAC 2 cut(s) 109, 823
Hpy99I CGWCG 3 cut(s) 341, 371, 446
HpyAV CCTTC 2 cut(s) 112, 615
HpyCH4III ACNGT 3 cut(s) 60, 386, 582
HpyCH4IV ACGT 2 cut(s) 41, 51
HpyCH4V TGCA 7 cut(s) 27, 226, 517, 738, 799, 974, 989
HpyF10VI GCNNNNNNNGC 4 cut(s) 78, 851, 980, 983
HpyF3I CTNAG 4 cut(s) 379, 776, 816, 883
HpySE526I ACGT 2 cut(s) 41, 51
Hsp92I GRCGYC 2 cut(s) 144, 285
Hsp92II CATG 3 cut(s) 16, 738, 750
HspAI GCGC 1 cut(s) 144
KasI GGCGCC 1 cut(s) 143
Kpn2I TCCGGA 1 cut(s) 657
Kzo9I GATC 6 cut(s) 132, 375, 438, 541, 589, 615
Lsp1109I GCAGC 3 cut(s) 467, 973, 986
LweI GCATC 2 cut(s) 799, 808
MaeI CTAG 2 cut(s) 687, 997
MaeII ACGT 2 cut(s) 41, 51
MaeIII GTNAC 4 cut(s) 42, 352, 386, 696
MalI GATC 6 cut(s) 134, 377, 440, 543, 591, 617
MboI GATC 6 cut(s) 132, 375, 438, 541, 589, 615
MboII GAAGA 2 cut(s) 775, 783
MfeI CAATTG 1 cut(s) 755
MhlI GDGCHC 1 cut(s) 78
MlsI TGGCCA 1 cut(s) 185
MluCI AATT 3 cut(s) 714, 755, 899
MluNI TGGCCA 1 cut(s) 185
Mly113I GGCGCC 1 cut(s) 144
MlyI GAGTC 2 cut(s) 380, 802
MmeI TCCRAC 2 cut(s) 388, 555
Mox20I TGGCCA 1 cut(s) 185
MroI TCCGGA 1 cut(s) 657
MscI TGGCCA 1 cut(s) 185
MslI CAYNNNNRTG 2 cut(s) 11, 818
Msp20I TGGCCA 1 cut(s) 185
MspI CCGG 9 cut(s) 150, 197, 391, 463, 535, 638, 658, 826, 956
MspR9I CCNGG 5 cut(s) 151, 182, 197, 536, 856
MunI CAATTG 1 cut(s) 755
Mva1269I GAATGC 1 cut(s) 601
MvaI CCWGG 2 cut(s) 182, 856
MvnI CGCG 1 cut(s) 282
MwoI GCNNNNNNNGC 4 cut(s) 78, 851, 980, 983
NarI GGCGCC 1 cut(s) 144
NciI CCSGG 3 cut(s) 151, 197, 536
NdeII GATC 6 cut(s) 132, 375, 438, 541, 589, 615
NlaIII CATG 3 cut(s) 16, 738, 750
NlaIV GGNNCC 3 cut(s) 145, 876, 954
NmuCI GTSAC 2 cut(s) 352, 386
NspI RCATGY 2 cut(s) 738, 750
NspV TTCGAA 1 cut(s) 769
OliI CACNNNNGTG 1 cut(s) 818
PaqCI CACCTGC 1 cut(s) 365
PceI AGGCCT 1 cut(s) 854
PcsI WCGNNNNNNNCGW 1 cut(s) 447
PctI GAATGC 1 cut(s) 601
PfeI GAWTC 1 cut(s) 766
PflFI GACNNNGTC 1 cut(s) 536
PkrI GCNGC 7 cut(s) 71, 284, 482, 961, 976, 985, 988
PleI GAGTC 2 cut(s) 379, 801
PluTI GGCGCC 1 cut(s) 147
PpsI GAGTC 2 cut(s) 379, 801
Psp6I CCWGG 2 cut(s) 180, 854
PspEI GGTNACC 1 cut(s) 352
PspGI CCWGG 2 cut(s) 180, 854
PspN4I GGNNCC 3 cut(s) 145, 876, 954
PspPI GGNCC 3 cut(s) 238, 665, 875
PstI CTGCAG 1 cut(s) 976
PsyI GACNNNGTC 1 cut(s) 536
RsaI GTAC 2 cut(s) 54, 824
RsaNI GTAC 2 cut(s) 53, 823
RseI CAYNNNNRTG 2 cut(s) 11, 818
SatI GCNGC 7 cut(s) 70, 283, 481, 960, 975, 984, 987
Sau3AI GATC 6 cut(s) 132, 375, 438, 541, 589, 615
Sau96I GGNCC 3 cut(s) 238, 665, 875
SchI GAGTC 2 cut(s) 380, 802
ScrFI CCNGG 5 cut(s) 151, 182, 197, 536, 856
SduI GDGCHC 1 cut(s) 78
SfaNI GCATC 2 cut(s) 799, 808
SfcI CTRYAG 1 cut(s) 972
SfoI GGCGCC 1 cut(s) 145
SfuI TTCGAA 1 cut(s) 769
SinI GGWCC 1 cut(s) 665
SmiMI CAYNNNNRTG 2 cut(s) 11, 818
SmlI CTYRAG 1 cut(s) 270
SmoI CTYRAG 1 cut(s) 270
Sse9I AATT 3 cut(s) 714, 755, 899
SseBI AGGCCT 1 cut(s) 854
SsiI CCGC 9 cut(s) 69, 72, 112, 190, 282, 323, 599, 960, 983
SspDI GGCGCC 1 cut(s) 143
SspMI CTAG 2 cut(s) 687, 997
StuI AGGCCT 1 cut(s) 854
StyD4I CCNGG 5 cut(s) 149, 180, 195, 534, 854
TaaI ACNGT 3 cut(s) 60, 386, 582
TaiI ACGT 2 cut(s) 44, 54
TaqI TCGA 8 cut(s) 93, 177, 369, 374, 416, 441, 540, 769
TasI AATT 3 cut(s) 714, 755, 899
TauI GCSGC 4 cut(s) 72, 285, 962, 986
TfiI GAWTC 1 cut(s) 766
TscAI CASTG 4 cut(s) 63, 820, 891, 946
TseFI GTSAC 2 cut(s) 352, 386
TseI GCWGC 3 cut(s) 480, 974, 986
Tsp45I GTSAC 2 cut(s) 352, 386
TspGWI ACGGA 2 cut(s) 573, 657
TspRI CASTG 4 cut(s) 63, 820, 891, 946
Tth111I GACNNNGTC 1 cut(s) 536
VpaK11BI GGWCC 1 cut(s) 665
XagI CCTNNNNNAGG 1 cut(s) 859
XceI RCATGY 2 cut(s) 738, 750
XcmI CCANNNNNNNNNTGG 1 cut(s) 299
XspI CTAG 2 cut(s) 687, 997
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.