Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0004930

Physical Location & Seq

Genomic Coordinates Reverse (-)

65974993 .. 65975842

Gene Structure 850 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG493900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGGATCGACTGGATCCGGAAAAACCAAACTCTCTGTAGATTTAGCCCTACAGTTTAAGGGTGAAATCATCAATTCTGACAAAATTCAAGTCTACAAAGGTGGCGATATTATTACTAATAAAGTCTCGGAGATCGAGCGCCAAGGAATCCGCCACCATTTGCTAGGGTTTATTGAAGACACTGAGGAGGACTTCACCATAGAAGATTTTTGCCACCATGTACAAGGTACCATTAAAGAAATTATTAACCGCAATTCGATCCCAATCATTGCAGGTGGATCGAACTCGTACATCGAGGCACTCGTTAAAGATCCAAAAATTAATTTTCGAGCTAAATATGATTGTTGCTTCCTATGGCTCGATGCTTCCTTACCAGTAATATATGCTCATGTGTCAAGAAGAGTTGATCAGATGGTGGAGGCAGGTGTTGTGAATGAGCTAAGACGATTTTGTGTTCCCGGGGCTGATTATGAACGTGGCATCCGACGAGCGATTGGAGCTCAGGAGATGGATCCCTTTTTCATGGCGGAGAGAAATAATGAAGATGAGGATACCAAGATGTCATTGCTTGAAGCTGGCATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009058 GO:0009308 GO:0009451 GO:0009536 GO:0009690 GO:0009691 GO:0009824 GO:0009987 GO:0010467 GO:0010817 GO:0016070 GO:0016740 GO:0016765 GO:0034470 GO:0034641 GO:0034660 GO:0034754 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0052381 GO:0052622 GO:0052623 GO:0065007 GO:0065008 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00908 ko01100 ko01110 map00908 map01100 map01110

Pfam Domains

Protein Families

IPPT

Protein Analysis

194

Amino Acids

21.83

Weight (kDa)

5.18

Isoelectric Point (pI)

47.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IPT	PF01745	2 - 141	1.2e-06	Isopentenyl transferase
IPPT	PF01715	30 - 104	2.2e-20	IPP transferase
IPPT	PF01715	110 - 179	1.1e-08	IPP transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004930)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63110
fragaria_vesca	FvH4_2g23840
malus_domestica	MD00G1084500.v1.1 MD03G1267900.v1.1 MD11G1288800.v1.1
prunus_persica	Prupe.5G047700_v2.0.a1 Prupe.8G243600_v2.0.a1
pyrus_communis	pycom06g03440
rosa_chinensis	RchiOBHm_Chr6g0291431 RchiOBHm_Chr6g0308751
rosa_laevigata	RLG00000010623 RLG00000010625 RLG00000012115
rosa_multiflora	Rmu_sc0003735.1_g000032
rosa_roxburghii	Rroxscaffold_7G00159980 Rroxscaffold_7G00176060
rosa_rugosa	Rorug06G0219300 Rorug06G0368000
rosa_samantha	Rh6AG331600 Rh6AG479000 Rh6AG479100 Rh6BG338500 Rh6BG488600 Rh6BG488700 Rh6CG344700 Rh6CG493900 Rh6DG331600 Rh6DG479500
rosa_wichuraiana	Rw6G028790 Rw6G041750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	263, 413
Acc36I	ACCTGC	2 cut(s)	263, 413
Acc65I	GGTACC	1 cut(s)	227
AccB1I	GGYRCC	1 cut(s)	227
AccI	GTMKAC	1 cut(s)	93
AccIII	TCCGGA	1 cut(s)	17
AciI	CCGC	3 cut(s)	151, 250, 527
AclWI	GGATC	8 cut(s)	9, 13, 22, 253, 286, 305, 506, 519
AcsI	RAATTY	1 cut(s)	84
AfaI	GTAC	3 cut(s)	222, 229, 290
AgsI	TTSAA	3 cut(s)	89, 176, 572
AloI	GAACNNNNNNTCC	2 cut(s)	465, 497
AluBI	AGCT	4 cut(s)	332, 439, 500, 575
AluI	AGCT	4 cut(s)	332, 439, 500, 575
Alw21I	GWGCWC	1 cut(s)	502
Alw26I	GTCTC	1 cut(s)	130
AlwI	GGATC	8 cut(s)	9, 13, 22, 253, 286, 305, 506, 519
Ama87I	CYCGRG	1 cut(s)	458
Aor13HI	TCCGGA	1 cut(s)	17
ApoI	RAATTY	1 cut(s)	84
ArsI	GACNNNNNNTTYG	2 cut(s)	75, 107
AseI	ATTAAT	1 cut(s)	321
Asp718I	GGTACC	1 cut(s)	227
AspLEI	GCGC	1 cut(s)	141
AsuC2I	CCSGG	2 cut(s)	459, 460
AsuHPI	GGTGA	2 cut(s)	74, 187
AvaI	CYCGRG	1 cut(s)	458
BamHI	GGATCC	2 cut(s)	14, 511
BanI	GGYRCC	1 cut(s)	227
BanII	GRGCYC	1 cut(s)	502
BbsI	GAAGAC	1 cut(s)	183
Bbv12I	GWGCWC	1 cut(s)	502
BccI	CCATC	2 cut(s)	406, 502
BcgI	CGANNNNNNTGC	2 cut(s)	261, 295
BciVI	GTATCC	1 cut(s)	544
BclI	TGATCA	1 cut(s)	406
BcnI	CCSGG	2 cut(s)	459, 460
BcoDI	GTCTC	1 cut(s)	130
BfaI	CTAG	1 cut(s)	164
BfmI	CTRYAG	2 cut(s)	36, 50
BfoI	RGCGCY	1 cut(s)	142
BfuAI	ACCTGC	2 cut(s)	263, 413
BfuI	GTATCC	1 cut(s)	544
Bme1390I	CCNGG	2 cut(s)	459, 460
BmeT110I	CYCGRG	1 cut(s)	458
BmiI	GGNNCC	3 cut(s)	16, 229, 513
BmrFI	CCNGG	2 cut(s)	459, 460
BmsI	GCATC	2 cut(s)	352, 489
BpiI	GAAGAC	1 cut(s)	183
Bpu10I	CCTNAGC	1 cut(s)	501
BpuMI	CCSGG	2 cut(s)	459, 460
BsaBI	GATNNNNATC	1 cut(s)	263
BsaJI	CCNNGG	3 cut(s)	142, 458, 459
BsaWI	WCCGGW	1 cut(s)	17
Bse1I	ACTGG	2 cut(s)	16, 374
Bse3DI	GCAATG	2 cut(s)	267, 563
Bse8I	GATNNNNATC	1 cut(s)	263
BseAI	TCCGGA	1 cut(s)	17
BseDI	CCNNGG	3 cut(s)	142, 458, 459
BseGI	GGATG	1 cut(s)	480
BseJI	GATNNNNATC	1 cut(s)	263
BseMI	GCAATG	2 cut(s)	267, 563
BseMII	CTCAG	2 cut(s)	174, 515
BseNI	ACTGG	2 cut(s)	16, 374
BseRI	GAGGAG	1 cut(s)	200
BshNI	GGYRCC	1 cut(s)	227
BsiHKAI	GWGCWC	1 cut(s)	502
BsiHKCI	CYCGRG	1 cut(s)	458
BsiSI	CCGG	2 cut(s)	18, 459
BsmAI	GTCTC	1 cut(s)	130
BsoBI	CYCGRG	1 cut(s)	458
Bsp1286I	GDGCHC	1 cut(s)	502
Bsp13I	TCCGGA	1 cut(s)	17
Bsp1407I	TGTACA	1 cut(s)	220
Bsp143I	GATC	8 cut(s)	5, 14, 132, 258, 278, 310, 406, 511
BspACI	CCGC	3 cut(s)	151, 250, 527
BspCNI	CTCAG	2 cut(s)	175, 514
BspEI	TCCGGA	1 cut(s)	17
BspLI	GGNNCC	3 cut(s)	16, 229, 513
BspMI	ACCTGC	2 cut(s)	263, 413
BspPI	GGATC	8 cut(s)	9, 13, 22, 253, 286, 305, 506, 519
BspT107I	GGYRCC	1 cut(s)	227
BsrDI	GCAATG	2 cut(s)	267, 563
BsrGI	TGTACA	1 cut(s)	220
BsrI	ACTGG	2 cut(s)	16, 374
BssECI	CCNNGG	3 cut(s)	142, 458, 459
BssMI	GATC	8 cut(s)	5, 14, 132, 258, 278, 310, 406, 511
BssT1I	CCWWGG	1 cut(s)	142
Bst4CI	ACNGT	1 cut(s)	54
Bst6I	CTCTTC	1 cut(s)	394
BstAUI	TGTACA	1 cut(s)	220
BstC8I	GCNNGC	1 cut(s)	577
BstDEI	CTNAG	3 cut(s)	183, 440, 501
BstF5I	GGATG	1 cut(s)	480
BstH2I	RGCGCY	1 cut(s)	142
BstHHI	GCGC	1 cut(s)	141
BstKTI	GATC	8 cut(s)	8, 17, 135, 261, 281, 313, 409, 514
BstMAI	GTCTC	1 cut(s)	130
BstMBI	GATC	8 cut(s)	5, 14, 132, 258, 278, 310, 406, 511
BstMWI	GCNNNNNNNGC	1 cut(s)	497
BstSCI	CCNGG	2 cut(s)	457, 458
BstSFI	CTRYAG	2 cut(s)	36, 50
BstV2I	GAAGAC	1 cut(s)	183
BstX2I	RGATCY	3 cut(s)	14, 310, 511
BstYI	RGATCY	3 cut(s)	14, 310, 511
BsuI	GTATCC	1 cut(s)	544
BtsCI	GGATG	1 cut(s)	480
BtsIMutI	CAGTG	1 cut(s)	180
BveI	ACCTGC	2 cut(s)	263, 413
Cac8I	GCNNGC	1 cut(s)	577
CfoI	GCGC	1 cut(s)	141
Cfr9I	CCCGGG	1 cut(s)	458
Csp6I	GTAC	3 cut(s)	221, 228, 289
CviAII	CATG	3 cut(s)	218, 389, 523
CviJI	RGCY	7 cut(s)	47, 332, 358, 439, 464, 500, 575
CviKI_1	RGCY	7 cut(s)	47, 332, 358, 439, 464, 500, 575
CviQI	GTAC	3 cut(s)	221, 228, 289
DdeI	CTNAG	3 cut(s)	183, 440, 501
DpnI	GATC	8 cut(s)	7, 16, 134, 260, 280, 312, 408, 513
DpnII	GATC	8 cut(s)	5, 14, 132, 258, 278, 310, 406, 511
Eam1104I	CTCTTC	1 cut(s)	394
EarI	CTCTTC	1 cut(s)	394
EciI	GGCGGA	2 cut(s)	140, 542
Ecl136II	GAGCTC	1 cut(s)	500
Eco130I	CCWWGG	1 cut(s)	142
Eco24I	GRGCYC	1 cut(s)	502
Eco53kI	GAGCTC	1 cut(s)	500
Eco88I	CYCGRG	1 cut(s)	458
EcoICRI	GAGCTC	1 cut(s)	500
EcoT14I	CCWWGG	1 cut(s)	142
EcoT38I	GRGCYC	1 cut(s)	502
ErhI	CCWWGG	1 cut(s)	142
FaeI	CATG	3 cut(s)	221, 392, 526
FaiI	YATR	9 cut(s)	200, 219, 339, 355, 382, 384, 390, 471, 524
FatI	CATG	3 cut(s)	217, 388, 522
FbaI	TGATCA	1 cut(s)	406
FblI	GTMKAC	1 cut(s)	93
FokI	GGATG	1 cut(s)	467
FriOI	GRGCYC	1 cut(s)	502
FspBI	CTAG	1 cut(s)	164
GlaI	GCGC	1 cut(s)	140
HaeII	RGCGCY	1 cut(s)	142
HapII	CCGG	2 cut(s)	18, 459
HhaI	GCGC	1 cut(s)	141
Hin1II	CATG	3 cut(s)	221, 392, 526
Hin6I	GCGC	1 cut(s)	139
HinP1I	GCGC	1 cut(s)	139
HinfI	GANTC	1 cut(s)	147
HpaII	CCGG	2 cut(s)	18, 459
HphI	GGTGA	2 cut(s)	74, 187
Hpy166II	GTNNAC	1 cut(s)	94
Hpy188I	TCNGA	4 cut(s)	79, 130, 411, 485
Hpy188III	TCNNGA	3 cut(s)	18, 396, 503
Hpy8I	GTNNAC	1 cut(s)	94
Hpy99I	CGWCG	1 cut(s)	489
HpyCH4III	ACNGT	1 cut(s)	54
HpyCH4IV	ACGT	1 cut(s)	475
HpyCH4V	TGCA	1 cut(s)	272
HpyF10VI	GCNNNNNNNGC	1 cut(s)	497
HpyF3I	CTNAG	3 cut(s)	183, 440, 501
HpySE526I	ACGT	1 cut(s)	475
Hsp92II	CATG	3 cut(s)	221, 392, 526
HspAI	GCGC	1 cut(s)	139
Kpn2I	TCCGGA	1 cut(s)	17
KpnI	GGTACC	1 cut(s)	231
Ksp22I	TGATCA	1 cut(s)	406
Kzo9I	GATC	8 cut(s)	5, 14, 132, 258, 278, 310, 406, 511
LmnI	GCTCC	1 cut(s)	497
LpnPI	CCDG	7 cut(s)	31, 258, 387, 408, 472, 488, 561
LweI	GCATC	2 cut(s)	352, 489
MaeI	CTAG	1 cut(s)	164
MaeII	ACGT	1 cut(s)	475
MalI	GATC	8 cut(s)	7, 16, 134, 260, 280, 312, 408, 513
MboI	GATC	8 cut(s)	5, 14, 132, 258, 278, 310, 406, 511
MboII	GAAGA	4 cut(s)	188, 215, 411, 554
MflI	RGATCY	3 cut(s)	14, 310, 511
MhlI	GDGCHC	1 cut(s)	502
MluCI	AATT	6 cut(s)	73, 84, 240, 253, 318, 322
MmeI	TCCRAC	1 cut(s)	508
MnlI	CCTC	5 cut(s)	178, 181, 289, 412, 541
MroI	TCCGGA	1 cut(s)	17
MseI	TTAA	5 cut(s)	57, 234, 246, 306, 321
MspI	CCGG	2 cut(s)	18, 459
MspR9I	CCNGG	2 cut(s)	459, 460
MwoI	GCNNNNNNNGC	1 cut(s)	497
NciI	CCSGG	2 cut(s)	459, 460
NdeII	GATC	8 cut(s)	5, 14, 132, 258, 278, 310, 406, 511
NlaIII	CATG	3 cut(s)	221, 392, 526
NlaIV	GGNNCC	3 cut(s)	16, 229, 513
PaqCI	CACCTGC	2 cut(s)	263, 413
PcsI	WCGNNNNNNNCGW	2 cut(s)	300, 481
PfeI	GAWTC	1 cut(s)	147
PshBI	ATTAAT	1 cut(s)	321
Psp124BI	GAGCTC	1 cut(s)	502
PspN4I	GGNNCC	3 cut(s)	16, 229, 513
PsuI	RGATCY	3 cut(s)	14, 310, 511
RsaI	GTAC	3 cut(s)	222, 229, 290
RsaNI	GTAC	3 cut(s)	221, 228, 289
SacI	GAGCTC	1 cut(s)	502
SaqAI	TTAA	5 cut(s)	57, 234, 246, 306, 321
Sau3AI	GATC	8 cut(s)	5, 14, 132, 258, 278, 310, 406, 511
ScrFI	CCNGG	2 cut(s)	459, 460
SduI	GDGCHC	1 cut(s)	502
SetI	ASST	9 cut(s)	103, 229, 277, 334, 427, 441, 478, 502, 577
SfaNI	GCATC	2 cut(s)	352, 489
SfcI	CTRYAG	2 cut(s)	36, 50
SmaI	CCCGGG	1 cut(s)	460
Sse9I	AATT	6 cut(s)	73, 84, 240, 253, 318, 322
SsiI	CCGC	3 cut(s)	151, 250, 527
SspMI	CTAG	1 cut(s)	164
SstI	GAGCTC	1 cut(s)	502
StyD4I	CCNGG	2 cut(s)	457, 458
StyI	CCWWGG	1 cut(s)	142
TaaI	ACNGT	1 cut(s)	54
TaiI	ACGT	1 cut(s)	478
TaqI	TCGA	7 cut(s)	8, 135, 257, 281, 294, 328, 360
TasI	AATT	6 cut(s)	73, 84, 240, 253, 318, 322
TatI	WGTACW	1 cut(s)	220
TfiI	GAWTC	1 cut(s)	147
Tru1I	TTAA	5 cut(s)	57, 234, 246, 306, 321
Tru9I	TTAA	5 cut(s)	57, 234, 246, 306, 321
TscAI	CASTG	1 cut(s)	187
TspDTI	ATGAA	3 cut(s)	486, 511, 555
TspMI	CCCGGG	1 cut(s)	458
TspRI	CASTG	1 cut(s)	187
VspI	ATTAAT	1 cut(s)	321
XapI	RAATTY	1 cut(s)	84
XmaI	CCCGGG	1 cut(s)	458
XmiI	GTMKAC	1 cut(s)	93
XspI	CTAG	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.