Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0004930

Physical Location & Seq

Genomic Coordinates Forward (+)

35283239 .. 35284619

Gene Structure 1381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1267900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGATGCCAATGTGCAAACAAATACAAACATTACAACATGTTCCATCTAGTGGCCATAATCATAAAATCGACGTGTTCAATCCTCACCGGCAGAAGGAGAAGGTGGTGATCGTAATGGGAGCAACAGGGACCGGAAAGTCAAGGCTCTCCATCGACCTAGCCACCTGTTTCCCGGCAGAAATCATAAACTCCGACAAAATGCAAGTCTACGAAGGCCTTGACATAGTCACCAACAAAATAACCAAAGAAGAGCAACGTGGTGTACCGCACCATTTGCTAGGGATGCTAGATCCTCATGAAGATTTTACTGCCAGGGATTTTTGTGACCTAACCTCAATTGCCATTGAATCCATTTTAGGCCGTGATCGGCTTCCAATCATCGTTGGAGGTTCCAACTCTTACATCGAGGCGTTGATCGATGATTATGACTATAAATTTCGGTCCAAGTATGACTGTTGCTTTTTATGGGTAGATGTGTCTACACCCGTTCTGCACTCTTTTGTGTCAAAACGGGTAGACCACATGGTTCACAACGGAATGGTGGATGAGGCGAGAGAGTACTTTGATCCCAATGCAGATTACACGAAAGGGATTCGAAGAGCAATAGGGGTCCCTGAATTCGATAAGTACTTCAGGTATGGGCCATTTTTGGATGAAGAAACTCGTACTCGGTTACTACGACAAGCAGTGGACGAAATTAAGGACAATACGTGCAAATTGGCATGTCGACAACTGGAGAAGATTCATAGACTTAGAAATATCAAAGGGTGGAATCTGCACCCGTTGGATGCCACGGAGGTGTTCCGAAAGCGCGGCGAAGAGGCCGACGAGGCCTGGAAAAAGCTTGTGTCGGGGACAAGTGCTATGATCGTTGGCCAGTTTCTTTACAATATGACAGCTGAGGTTCCTCCACATCTTGGAAGCCTTAGGGTTCTTGAAGCACTTGCAGCTGCAACTCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009058 GO:0009308 GO:0009451 GO:0009536 GO:0009690 GO:0009691 GO:0009824 GO:0009987 GO:0010467 GO:0010817 GO:0016070 GO:0016740 GO:0016765 GO:0034470 GO:0034641 GO:0034660 GO:0034754 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0052381 GO:0052622 GO:0052623 GO:0065007 GO:0065008 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00908 ko01100 ko01110 map00908 map01100 map01110

Pfam Domains

Protein Families

IPPT

Protein Analysis

321

Amino Acids

36.49

Weight (kDa)

6.4

Isoelectric Point (pI)

37.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IPT	PF01745	34 - 158	2.5e-06	Isopentenyl transferase
IPPT	PF01715	68 - 144	1.3e-24	IPP transferase
IPPT	PF01715	148 - 246	6.3e-13	IPP transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004930)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63110
fragaria_vesca	FvH4_2g23840
malus_domestica	MD00G1084500.v1.1 MD03G1267900.v1.1 MD11G1288800.v1.1
prunus_persica	Prupe.5G047700_v2.0.a1 Prupe.8G243600_v2.0.a1
pyrus_communis	pycom06g03440
rosa_chinensis	RchiOBHm_Chr6g0291431 RchiOBHm_Chr6g0308751
rosa_laevigata	RLG00000010623 RLG00000010625 RLG00000012115
rosa_multiflora	Rmu_sc0003735.1_g000032
rosa_roxburghii	Rroxscaffold_7G00159980 Rroxscaffold_7G00176060
rosa_rugosa	Rorug06G0219300 Rorug06G0368000
rosa_samantha	Rh6AG331600 Rh6AG479000 Rh6AG479100 Rh6BG338500 Rh6BG488600 Rh6BG488700 Rh6CG344700 Rh6CG493900 Rh6DG331600 Rh6DG479500
rosa_wichuraiana	Rw6G028790 Rw6G041750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	136
AccB7I	CCANNNNNTGG	2 cut(s)	50, 917
AccI	GTMKAC	4 cut(s)	207, 479, 516, 727
AccII	CGCG	1 cut(s)	813
AciI	CCGC	2 cut(s)	266, 813
AclWI	GGATC	2 cut(s)	284, 560
AcoI	YGGCCR	2 cut(s)	52, 874
AcsI	RAATTY	2 cut(s)	434, 617
AcuI	CTGAAG	1 cut(s)	616
AfaI	GTAC	4 cut(s)	264, 560, 629, 667
AfiI	CCNNNNNNNGG	3 cut(s)	50, 94, 917
AflIII	ACRYGT	2 cut(s)	37, 72
AgsI	TTSAA	3 cut(s)	79, 347, 938
AjiI	CACGTC	1 cut(s)	73
AjnI	CCWGG	2 cut(s)	311, 833
AleI	CACNNNNGTG	1 cut(s)	797
AluBI	AGCT	3 cut(s)	844, 899, 950
AluI	AGCT	3 cut(s)	844, 899, 950
AlwI	GGATC	2 cut(s)	284, 560
AoxI	GGCC	7 cut(s)	52, 214, 358, 641, 822, 831, 874
ApeKI	GCWGC	2 cut(s)	947, 950
ApoI	RAATTY	2 cut(s)	434, 617
ArsI	GACNNNNNNTTYG	2 cut(s)	189, 221
AspLEI	GCGC	1 cut(s)	813
AspS9I	GGNCC	4 cut(s)	129, 441, 610, 641
AsuC2I	CCSGG	1 cut(s)	173
AsuHPI	GGTGA	3 cut(s)	77, 118, 220
AsuII	TTCGAA	1 cut(s)	595
AvaII	GGWCC	3 cut(s)	129, 441, 610
AxyI	CCTNAGG	1 cut(s)	926
BalI	TGGCCA	2 cut(s)	54, 876
BbvCI	CCTCAGC	1 cut(s)	900
BbvI	GCAGC	2 cut(s)	937, 959
BccI	CCATC	2 cut(s)	52, 158
BceAI	ACGGC	1 cut(s)	345
BciT130I	CCWGG	2 cut(s)	313, 835
BcnI	CCSGG	1 cut(s)	173
BfaI	CTAG	5 cut(s)	48, 158, 278, 287, 961
BglI	GCCNNNNNGGC	1 cut(s)	830
BisI	GCNGC	3 cut(s)	814, 948, 951
BlsI	GCNGC	3 cut(s)	815, 949, 952
BmcAI	AGTACT	2 cut(s)	560, 629
Bme1390I	CCNGG	3 cut(s)	173, 313, 835
Bme18I	GGWCC	3 cut(s)	129, 441, 610
BmgBI	CACGTC	1 cut(s)	73
BmgT120I	GGNCC	4 cut(s)	129, 441, 610, 641
BmiI	GGNNCC	5 cut(s)	130, 391, 611, 612, 906
BmrFI	CCNGG	3 cut(s)	173, 313, 835
BmsI	GCATC	2 cut(s)	273, 778
BpmI	CTGGAG	1 cut(s)	755
Bpu10I	CCTNAGC	1 cut(s)	900
Bpu14I	TTCGAA	1 cut(s)	595
BpuMI	CCSGG	1 cut(s)	173
Bsa29I	ATCGAT	1 cut(s)	417
BsaAI	YACGTR	1 cut(s)	711
BsaJI	CCNNGG	2 cut(s)	312, 792
BsaWI	WCCGGW	1 cut(s)	131
Bsc4I	CCNNNNNNNGG	3 cut(s)	50, 94, 917
Bse118I	RCCGGY	1 cut(s)	87
Bse1I	ACTGG	2 cut(s)	738, 877
Bse21I	CCTNAGG	1 cut(s)	926
BseBI	CCWGG	2 cut(s)	313, 835
BseCI	ATCGAT	1 cut(s)	417
BseDI	CCNNGG	2 cut(s)	312, 792
BseGI	GGATG	4 cut(s)	288, 550, 658, 793
BseLI	CCNNNNNNNGG	3 cut(s)	50, 94, 917
BseMII	CTCAG	1 cut(s)	891
BseNI	ACTGG	2 cut(s)	738, 877
BseXI	GCAGC	2 cut(s)	937, 959
BsgI	GTGCAG	2 cut(s)	476, 761
Bsh1236I	CGCG	1 cut(s)	813
BshFI	GGCC	7 cut(s)	54, 216, 360, 643, 824, 833, 876
BshVI	ATCGAT	1 cut(s)	417
BsiSI	CCGG	3 cut(s)	88, 132, 173
BslFI	GGGAC	3 cut(s)	142, 596, 868
BslI	CCNNNNNNNGG	3 cut(s)	50, 94, 917
BsmFI	GGGAC	3 cut(s)	142, 596, 868
BsnI	GGCC	7 cut(s)	54, 216, 360, 643, 824, 833, 876
Bsp119I	TTCGAA	1 cut(s)	595
Bsp143I	GATC	6 cut(s)	108, 289, 364, 414, 565, 867
BspACI	CCGC	2 cut(s)	266, 813
BspANI	GGCC	7 cut(s)	54, 216, 360, 643, 824, 833, 876
BspCNI	CTCAG	1 cut(s)	892
BspDI	ATCGAT	1 cut(s)	417
BspFNI	CGCG	1 cut(s)	813
BspHI	TCATGA	1 cut(s)	295
BspLI	GGNNCC	5 cut(s)	130, 391, 611, 612, 906
BspPI	GGATC	2 cut(s)	284, 560
BspQI	GCTCTTC	2 cut(s)	243, 592
BspT104I	TTCGAA	1 cut(s)	595
BsrFI	RCCGGY	1 cut(s)	87
BsrI	ACTGG	2 cut(s)	738, 877
BssAI	RCCGGY	1 cut(s)	87
BssECI	CCNNGG	2 cut(s)	312, 792
BssMI	GATC	6 cut(s)	108, 289, 364, 414, 565, 867
Bst2UI	CCWGG	2 cut(s)	313, 835
Bst4CI	ACNGT	1 cut(s)	455
Bst6I	CTCTTC	3 cut(s)	243, 592, 813
BstAPI	GCANNNNNTGC	1 cut(s)	274
BstBAI	YACGTR	1 cut(s)	711
BstBI	TTCGAA	1 cut(s)	595
BstDEI	CTNAG	3 cut(s)	752, 900, 926
BstDSI	CCRYGG	1 cut(s)	792
BstF5I	GGATG	4 cut(s)	288, 550, 658, 793
BstFNI	CGCG	1 cut(s)	813
BstHHI	GCGC	1 cut(s)	813
BstKTI	GATC	6 cut(s)	111, 292, 367, 417, 568, 870
BstMBI	GATC	6 cut(s)	108, 289, 364, 414, 565, 867
BstMWI	GCNNNNNNNGC	4 cut(s)	274, 283, 830, 947
BstNI	CCWGG	2 cut(s)	313, 835
BstNSI	RCATGY	2 cut(s)	41, 726
BstSCI	CCNGG	3 cut(s)	171, 311, 833
BstUI	CGCG	1 cut(s)	813
BstV1I	GCAGC	2 cut(s)	937, 959
BstX2I	RGATCY	1 cut(s)	289
BstYI	RGATCY	1 cut(s)	289
Bsu15I	ATCGAT	1 cut(s)	417
Bsu36I	CCTNAGG	1 cut(s)	926
BsuRI	GGCC	7 cut(s)	54, 216, 360, 643, 824, 833, 876
BsuTUI	ATCGAT	1 cut(s)	417
BtgI	CCRYGG	1 cut(s)	792
BtrI	CACGTC	1 cut(s)	73
BtsCI	GGATG	4 cut(s)	288, 550, 658, 793
BtsI	GCAGTG	1 cut(s)	693
BtsIMutI	CAGTG	1 cut(s)	693
CciI	TCATGA	1 cut(s)	295
CfoI	GCGC	1 cut(s)	813
Cfr10I	RCCGGY	1 cut(s)	87
Cfr13I	GGNCC	4 cut(s)	129, 441, 610, 641
ClaI	ATCGAT	1 cut(s)	417
Csp6I	GTAC	4 cut(s)	263, 559, 628, 666
CviAII	CATG	4 cut(s)	38, 296, 523, 723
CviQI	GTAC	4 cut(s)	263, 559, 628, 666
DdeI	CTNAG	3 cut(s)	752, 900, 926
DpnI	GATC	6 cut(s)	110, 291, 366, 416, 567, 869
DpnII	GATC	6 cut(s)	108, 289, 364, 414, 565, 867
DrdI	GACNNNNNNGTC	1 cut(s)	136
DseDI	GACNNNNNNGTC	1 cut(s)	136
EaeI	YGGCCR	2 cut(s)	52, 874
Eam1104I	CTCTTC	3 cut(s)	243, 592, 813
EarI	CTCTTC	3 cut(s)	243, 592, 813
Eco147I	AGGCCT	2 cut(s)	216, 833
Eco47I	GGWCC	3 cut(s)	129, 441, 610
Eco57I	CTGAAG	1 cut(s)	616
Eco81I	CCTNAGG	1 cut(s)	926
EcoO109I	RGGNCCY	1 cut(s)	610
EcoRI	GAATTC	1 cut(s)	617
EcoRII	CCWGG	2 cut(s)	311, 833
FaeI	CATG	4 cut(s)	41, 299, 526, 726
FaqI	GGGAC	3 cut(s)	142, 596, 868
FatI	CATG	4 cut(s)	37, 295, 522, 722
FblI	GTMKAC	4 cut(s)	207, 479, 516, 727
Fnu4HI	GCNGC	3 cut(s)	814, 948, 951
FokI	GGATG	4 cut(s)	295, 557, 665, 800
Fsp4HI	GCNGC	3 cut(s)	814, 948, 951
FspBI	CTAG	5 cut(s)	48, 158, 278, 287, 961
GlaI	GCGC	1 cut(s)	812
GluI	GCNGC	3 cut(s)	814, 948, 951
GsuI	CTGGAG	1 cut(s)	755
HaeIII	GGCC	7 cut(s)	54, 216, 360, 643, 824, 833, 876
HapII	CCGG	3 cut(s)	88, 132, 173
HhaI	GCGC	1 cut(s)	813
Hin1II	CATG	4 cut(s)	41, 299, 526, 726
Hin6I	GCGC	1 cut(s)	811
HinP1I	GCGC	1 cut(s)	811
HincII	GTYRAC	1 cut(s)	728
HindII	GTYRAC	1 cut(s)	728
HindIII	AAGCTT	1 cut(s)	842
HinfI	GANTC	4 cut(s)	347, 592, 742, 772
HpaII	CCGG	3 cut(s)	88, 132, 173
HphI	GGTGA	3 cut(s)	77, 118, 220
Hpy166II	GTNNAC	7 cut(s)	208, 263, 480, 517, 529, 691, 728
Hpy188I	TCNGA	2 cut(s)	193, 806
Hpy188III	TCNNGA	2 cut(s)	296, 935
Hpy8I	GTNNAC	7 cut(s)	208, 263, 480, 517, 529, 691, 728
Hpy99I	CGWCG	2 cut(s)	74, 830
HpyAV	CCTTC	3 cut(s)	88, 94, 206
HpyCH4III	ACNGT	1 cut(s)	455
HpyCH4IV	ACGT	3 cut(s)	72, 256, 710
HpyCH4V	TGCA	8 cut(s)	15, 202, 493, 575, 714, 778, 947, 953
HpyF10VI	GCNNNNNNNGC	4 cut(s)	274, 283, 830, 947
HpyF3I	CTNAG	3 cut(s)	752, 900, 926
HpySE526I	ACGT	3 cut(s)	72, 256, 710
Hsp92II	CATG	4 cut(s)	41, 299, 526, 726
HspAI	GCGC	1 cut(s)	811
KflI	GGGWCCC	1 cut(s)	610
Kzo9I	GATC	6 cut(s)	108, 289, 364, 414, 565, 867
LguI	GCTCTTC	2 cut(s)	243, 592
LmnI	GCTCC	1 cut(s)	119
Lsp1109I	GCAGC	2 cut(s)	937, 959
LweI	GCATC	2 cut(s)	273, 778
MaeI	CTAG	5 cut(s)	48, 158, 278, 287, 961
MaeII	ACGT	3 cut(s)	72, 256, 710
MaeIII	GTNAC	3 cut(s)	226, 323, 672
MalI	GATC	6 cut(s)	110, 291, 366, 416, 567, 869
MboI	GATC	6 cut(s)	108, 289, 364, 414, 565, 867
MboII	GAAGA	6 cut(s)	260, 311, 609, 668, 751, 830
MfeI	CAATTG	1 cut(s)	336
MflI	RGATCY	1 cut(s)	289
MlsI	TGGCCA	2 cut(s)	54, 876
MluCI	AATT	5 cut(s)	336, 434, 617, 696, 716
MluNI	TGGCCA	2 cut(s)	54, 876
MmeI	TCCRAC	4 cut(s)	216, 364, 417, 765
Mox20I	TGGCCA	2 cut(s)	54, 876
MscI	TGGCCA	2 cut(s)	54, 876
MseI	TTAA	1 cut(s)	699
MslI	CAYNNNNRTG	1 cut(s)	797
Msp20I	TGGCCA	2 cut(s)	54, 876
MspA1I	CMGCKG	2 cut(s)	899, 950
MspI	CCGG	3 cut(s)	88, 132, 173
MspR9I	CCNGG	3 cut(s)	173, 313, 835
MunI	CAATTG	1 cut(s)	336
MvaI	CCWGG	2 cut(s)	313, 835
MvnI	CGCG	1 cut(s)	813
MwoI	GCNNNNNNNGC	4 cut(s)	274, 283, 830, 947
NciI	CCSGG	1 cut(s)	173
NdeII	GATC	6 cut(s)	108, 289, 364, 414, 565, 867
NlaIII	CATG	4 cut(s)	41, 299, 526, 726
NlaIV	GGNNCC	5 cut(s)	130, 391, 611, 612, 906
NmuCI	GTSAC	2 cut(s)	226, 323
NspI	RCATGY	2 cut(s)	41, 726
NspV	TTCGAA	1 cut(s)	595
OliI	CACNNNNGTG	1 cut(s)	797
PagI	TCATGA	1 cut(s)	295
PceI	AGGCCT	2 cut(s)	216, 833
PciI	ACATGT	1 cut(s)	37
PciSI	GCTCTTC	2 cut(s)	243, 592
PcsI	WCGNNNNNNNCGW	1 cut(s)	676
PfeI	GAWTC	4 cut(s)	347, 592, 742, 772
PflFI	GACNNNGTC	1 cut(s)	224
PflMI	CCANNNNNTGG	2 cut(s)	50, 917
PkrI	GCNGC	3 cut(s)	815, 949, 952
Ppu21I	YACGTR	1 cut(s)	711
PpuMI	RGGWCCY	1 cut(s)	610
PscI	ACATGT	1 cut(s)	37
Psp5II	RGGWCCY	1 cut(s)	610
Psp6I	CCWGG	2 cut(s)	311, 833
PspGI	CCWGG	2 cut(s)	311, 833
PspN4I	GGNNCC	5 cut(s)	130, 391, 611, 612, 906
PspPI	GGNCC	4 cut(s)	129, 441, 610, 641
PspPPI	RGGWCCY	1 cut(s)	610
PsuI	RGATCY	1 cut(s)	289
PsyI	GACNNNGTC	1 cut(s)	224
PvuII	CAGCTG	2 cut(s)	899, 950
RsaI	GTAC	4 cut(s)	264, 560, 629, 667
RsaNI	GTAC	4 cut(s)	263, 559, 628, 666
RseI	CAYNNNNRTG	1 cut(s)	797
SalI	GTCGAC	1 cut(s)	726
SapI	GCTCTTC	2 cut(s)	243, 592
SaqAI	TTAA	1 cut(s)	699
SatI	GCNGC	3 cut(s)	814, 948, 951
Sau3AI	GATC	6 cut(s)	108, 289, 364, 414, 565, 867
Sau96I	GGNCC	4 cut(s)	129, 441, 610, 641
ScaI	AGTACT	2 cut(s)	560, 629
ScrFI	CCNGG	3 cut(s)	173, 313, 835
SfaNI	GCATC	2 cut(s)	273, 778
SfiI	GGCCNNNNNGGCC	1 cut(s)	830
SfuI	TTCGAA	1 cut(s)	595
SinI	GGWCC	3 cut(s)	129, 441, 610
SmiMI	CAYNNNNRTG	1 cut(s)	797
Sse9I	AATT	5 cut(s)	336, 434, 617, 696, 716
SseBI	AGGCCT	2 cut(s)	216, 833
SsiI	CCGC	2 cut(s)	266, 813
SspMI	CTAG	5 cut(s)	48, 158, 278, 287, 961
StuI	AGGCCT	2 cut(s)	216, 833
StyD4I	CCNGG	3 cut(s)	171, 311, 833
TaaI	ACNGT	1 cut(s)	455
TaiI	ACGT	3 cut(s)	75, 259, 713
TaqI	TCGA	7 cut(s)	69, 153, 405, 417, 595, 621, 727
TaqII	GACCGA	1 cut(s)	429
TasI	AATT	5 cut(s)	336, 434, 617, 696, 716
TatI	WGTACW	2 cut(s)	558, 627
TauI	GCSGC	1 cut(s)	816
TfiI	GAWTC	4 cut(s)	347, 592, 742, 772
Tru1I	TTAA	1 cut(s)	699
Tru9I	TTAA	1 cut(s)	699
TscAI	CASTG	1 cut(s)	693
TseFI	GTSAC	2 cut(s)	226, 323
TseI	GCWGC	2 cut(s)	947, 950
Tsp45I	GTSAC	2 cut(s)	226, 323
TspDTI	ATGAA	3 cut(s)	312, 669, 734
TspGWI	ACGGA	2 cut(s)	549, 809
TspRI	CASTG	1 cut(s)	693
Tth111I	GACNNNGTC	1 cut(s)	224
Van91I	CCANNNNNTGG	2 cut(s)	50, 917
VpaK11BI	GGWCC	3 cut(s)	129, 441, 610
XapI	RAATTY	2 cut(s)	434, 617
XceI	RCATGY	2 cut(s)	41, 726
XmiI	GTMKAC	4 cut(s)	207, 479, 516, 727
XspI	CTAG	5 cut(s)	48, 158, 278, 287, 961
ZrmI	AGTACT	2 cut(s)	560, 629

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.