Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0004930

Physical Location & Seq

Genomic Coordinates Reverse (-)

5045135 .. 5047815

Gene Structure 2681 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G047700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGTTGCTCCTGCTCTCCTTGGGTTGATAAGATTAATTTGTATGCTCGTCAATATATTTGGAAAAGCAGGTAGGTCTTTGGTGTCAGCAGCAGCTATGGAATTTGTGCATGCCAATGGTCCTTTCCACAACAAGACCAAGGTTATTTTTGTATTGGGCTCGACCGGGTGTGGAAAAACAAAACTCTCCATCGACTTAGCCACTCGTTACAACGGTGAAATAATCAACTCCGACAAAATCCAAGTCTACAAAGGCCTTGACATTGTGACCAACAAAGCTACAAAGCCCGAGCAAAGAGGCATCCTCCATCACCTGCTAGGGTCCATCCAAGACCCGGAAGCTGATTTCACGGTGCAGGACTTTTGTCTTCAAGTGCCCAAAGCCCTCGATGAGATCACGAAGCGCAACCGCGTCCCGATCATTGCTGGTGGATCCAACACTTACATCGAGGCGCTTGTCGAAGATCCGACGCTCAGGTTCCAAGATAAATATGATTGCTGCTTCATATGGCTTGATGTGTCTTTGCCTGTGCTCTATAATCGTGTCTCTGAAAGAGTGGATGAAATGGTGGATGCTGGGCTTGTGGATGAGCTCCGGGAAATGTTTGTTCCCGGGGCAGATTATGAGCGCGGCATTCGTCGGGCTATTGGAGCTCCTGAGATGCATGCATATTTCATGGCTGAAATGGATCATTCAGCAGATGAGGCCGGAAAGGAGTTTCTGTTCAAAGATGGGATTCAAAAAACTAAGGACAATACTTTGAAACTTGCTGAGAGCCAGGTGCAGAAAATTGAACGTCTCGGGACCAAATGGGATATCCATCGGATTGATGTGACTGCCGTGCATGAGAGCCGTGGAAAGAAAGCTGTGGTTGCATGGGAAAACTTGGTTTTAAAGCCAAGCTTCTCCATTGTGAGTGAATTTTTGGAAATGGATGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009058 GO:0009308 GO:0009451 GO:0009536 GO:0009690 GO:0009691 GO:0009824 GO:0009987 GO:0010467 GO:0010817 GO:0016070 GO:0016740 GO:0016765 GO:0034470 GO:0034641 GO:0034660 GO:0034754 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0052381 GO:0052622 GO:0052623 GO:0065007 GO:0065008 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00908 ko01100 ko01110 map00908 map01100 map01110

Pfam Domains

Protein Families

IPPT

Protein Analysis

314

Amino Acids

34.96

Weight (kDa)

5.81

Isoelectric Point (pI)

30.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004930)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63110
fragaria_vesca	FvH4_2g23840
malus_domestica	MD00G1084500.v1.1 MD03G1267900.v1.1 MD11G1288800.v1.1
prunus_persica	Prupe.5G047700_v2.0.a1 Prupe.8G243600_v2.0.a1
pyrus_communis	pycom06g03440
rosa_chinensis	RchiOBHm_Chr6g0291431 RchiOBHm_Chr6g0308751
rosa_laevigata	RLG00000010623 RLG00000010625 RLG00000012115
rosa_multiflora	Rmu_sc0003735.1_g000032
rosa_roxburghii	Rroxscaffold_7G00159980 Rroxscaffold_7G00176060
rosa_rugosa	Rorug06G0219300 Rorug06G0368000
rosa_samantha	Rh6AG331600 Rh6AG479000 Rh6AG479100 Rh6BG338500 Rh6BG488600 Rh6BG488700 Rh6CG344700 Rh6CG493900 Rh6DG331600 Rh6DG479500
rosa_wichuraiana	Rw6G028790 Rw6G041750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	321
Acc36I	ACCTGC	2 cut(s)	59, 321
AccI	GTMKAC	1 cut(s)	246
AccII	CGCG	2 cut(s)	411, 630
AciI	CCGC	2 cut(s)	409, 630
AclWI	GGATC	4 cut(s)	426, 439, 458, 696
AcsI	RAATTY	2 cut(s)	101, 920
AfiI	CCNNNNNNNGG	1 cut(s)	334
AgsI	TTSAA	5 cut(s)	371, 727, 740, 763, 794
AjnI	CCWGG	1 cut(s)	777
AjuI	GAANNNNNNNTTGG	2 cut(s)	107, 139
AloI	GAACNNNNNNTCC	2 cut(s)	707, 739
AluBI	AGCT	7 cut(s)	95, 278, 341, 592, 653, 866, 903
AluI	AGCT	7 cut(s)	95, 278, 341, 592, 653, 866, 903
Alw21I	GWGCWC	3 cut(s)	534, 594, 655
Alw26I	GTCTC	2 cut(s)	550, 803
AlwI	GGATC	4 cut(s)	426, 439, 458, 696
Ama87I	CYCGRG	3 cut(s)	287, 611, 800
AoxI	GGCC	2 cut(s)	253, 705
ApeKI	GCWGC	3 cut(s)	89, 92, 498
ApoI	RAATTY	2 cut(s)	101, 920
ArsI	GACNNNNNNTTYG	2 cut(s)	228, 260
AseI	ATTAAT	1 cut(s)	35
AspLEI	GCGC	3 cut(s)	405, 454, 630
AspS9I	GGNCC	3 cut(s)	119, 321, 804
AsuC2I	CCSGG	5 cut(s)	166, 335, 596, 612, 613
AsuHPI	GGTGA	2 cut(s)	227, 302
AvaI	CYCGRG	3 cut(s)	287, 611, 800
AvaII	GGWCC	3 cut(s)	119, 321, 804
BaeGI	GKGCMC	1 cut(s)	378
BamHI	GGATCC	1 cut(s)	431
BanII	GRGCYC	3 cut(s)	161, 594, 655
BbsI	GAAGAC	1 cut(s)	359
Bbv12I	GWGCWC	3 cut(s)	534, 594, 655
BbvI	GCAGC	3 cut(s)	101, 104, 485
BccI	CCATC	6 cut(s)	197, 315, 332, 725, 828, 929
BceAI	ACGGC	2 cut(s)	824, 837
BciT130I	CCWGG	1 cut(s)	779
BcnI	CCSGG	5 cut(s)	166, 335, 596, 612, 613
BcoDI	GTCTC	2 cut(s)	550, 803
BfaI	CTAG	1 cut(s)	317
BfoI	RGCGCY	1 cut(s)	455
BfuAI	ACCTGC	2 cut(s)	59, 321
BisI	GCNGC	4 cut(s)	90, 93, 499, 631
BlsI	GCNGC	4 cut(s)	91, 94, 500, 632
Bme1390I	CCNGG	6 cut(s)	166, 335, 596, 612, 613, 779
Bme18I	GGWCC	3 cut(s)	119, 321, 804
BmeT110I	CYCGRG	3 cut(s)	287, 611, 800
BmgT120I	GGNCC	3 cut(s)	119, 321, 804
BmiI	GGNNCC	4 cut(s)	322, 433, 479, 805
BmrFI	CCNGG	6 cut(s)	166, 335, 596, 612, 613, 779
BmsI	GCATC	3 cut(s)	309, 562, 651
BoxI	GACNNNNGTC	1 cut(s)	363
BpiI	GAAGAC	1 cut(s)	359
BplI	GAGNNNNNCTC	2 cut(s)	288, 320
Bpu10I	CCTNAGC	1 cut(s)	473
BpuMI	CCSGG	5 cut(s)	166, 335, 596, 612, 613
BsaBI	GATNNNNATC	1 cut(s)	819
BsaJI	CCNNGG	5 cut(s)	19, 138, 611, 612, 853
BsaXI	ACNNNNNCTCC	2 cut(s)	707, 737
Bsc4I	CCNNNNNNNGG	1 cut(s)	334
Bse3DI	GCAATG	1 cut(s)	420
Bse8I	GATNNNNATC	1 cut(s)	819
BseBI	CCWGG	1 cut(s)	779
BseDI	CCNNGG	5 cut(s)	19, 138, 611, 612, 853
BseGI	GGATG	6 cut(s)	300, 324, 565, 577, 592, 940
BseJI	GATNNNNATC	1 cut(s)	819
BseLI	CCNNNNNNNGG	1 cut(s)	334
BseMI	GCAATG	1 cut(s)	420
BseMII	CTCAG	3 cut(s)	487, 648, 762
BseSI	GKGCMC	1 cut(s)	378
BseXI	GCAGC	3 cut(s)	101, 104, 485
BseYI	CCCAGC	1 cut(s)	575
BsgI	GTGCAG	2 cut(s)	374, 803
Bsh1236I	CGCG	2 cut(s)	411, 630
Bsh1285I	CGRYCG	1 cut(s)	165
BshFI	GGCC	2 cut(s)	255, 707
BsiEI	CGRYCG	1 cut(s)	165
BsiHKAI	GWGCWC	3 cut(s)	534, 594, 655
BsiHKCI	CYCGRG	3 cut(s)	287, 611, 800
BsiSI	CCGG	5 cut(s)	165, 335, 595, 612, 708
BslFI	GGGAC	2 cut(s)	398, 817
BslI	CCNNNNNNNGG	1 cut(s)	334
BsmAI	GTCTC	2 cut(s)	550, 803
BsmBI	CGTCTC	1 cut(s)	803
BsmFI	GGGAC	2 cut(s)	398, 817
BsmI	GAATGC	1 cut(s)	633
BsnI	GGCC	2 cut(s)	255, 707
BsoBI	CYCGRG	3 cut(s)	287, 611, 800
Bsp1286I	GDGCHC	5 cut(s)	161, 378, 534, 594, 655
Bsp143I	GATC	5 cut(s)	393, 417, 431, 463, 688
BspACI	CCGC	2 cut(s)	409, 630
BspANI	GGCC	2 cut(s)	255, 707
BspCNI	CTCAG	3 cut(s)	486, 649, 763
BspFNI	CGCG	2 cut(s)	411, 630
BspLI	GGNNCC	4 cut(s)	322, 433, 479, 805
BspMI	ACCTGC	2 cut(s)	59, 321
BspPI	GGATC	4 cut(s)	426, 439, 458, 696
BsrDI	GCAATG	1 cut(s)	420
BssECI	CCNNGG	5 cut(s)	19, 138, 611, 612, 853
BssMI	GATC	5 cut(s)	393, 417, 431, 463, 688
BssT1I	CCWWGG	2 cut(s)	19, 138
Bst2UI	CCWGG	1 cut(s)	779
Bst4CI	ACNGT	2 cut(s)	215, 352
BstC8I	GCNNGC	2 cut(s)	111, 666
BstDEI	CTNAG	5 cut(s)	196, 473, 657, 747, 771
BstDSI	CCRYGG	1 cut(s)	853
BstF5I	GGATG	6 cut(s)	300, 324, 565, 577, 592, 940
BstFNI	CGCG	2 cut(s)	411, 630
BstH2I	RGCGCY	1 cut(s)	455
BstHHI	GCGC	3 cut(s)	405, 454, 630
BstKTI	GATC	5 cut(s)	396, 420, 434, 466, 691
BstMAI	GTCTC	2 cut(s)	550, 803
BstMBI	GATC	5 cut(s)	393, 417, 431, 463, 688
BstMCI	CGRYCG	1 cut(s)	165
BstMWI	GCNNNNNNNGC	3 cut(s)	650, 704, 872
BstNI	CCWGG	1 cut(s)	779
BstNSI	RCATGY	2 cut(s)	113, 668
BstPAI	GACNNNNGTC	1 cut(s)	363
BstSCI	CCNGG	6 cut(s)	164, 333, 594, 610, 611, 777
BstSLI	GKGCMC	1 cut(s)	378
BstUI	CGCG	2 cut(s)	411, 630
BstV1I	GCAGC	3 cut(s)	101, 104, 485
BstV2I	GAAGAC	1 cut(s)	359
BstX2I	RGATCY	2 cut(s)	431, 463
BstYI	RGATCY	2 cut(s)	431, 463
BsuRI	GGCC	2 cut(s)	255, 707
BtgI	CCRYGG	1 cut(s)	853
BtsCI	GGATG	6 cut(s)	300, 324, 565, 577, 592, 940
BveI	ACCTGC	2 cut(s)	59, 321
Cac8I	GCNNGC	2 cut(s)	111, 666
CfoI	GCGC	3 cut(s)	405, 454, 630
Cfr13I	GGNCC	3 cut(s)	119, 321, 804
Cfr9I	CCCGGG	1 cut(s)	611
CseI	GACGC	2 cut(s)	400, 478
CviAII	CATG	5 cut(s)	110, 665, 676, 845, 876
DdeI	CTNAG	5 cut(s)	196, 473, 657, 747, 771
DpnI	GATC	5 cut(s)	395, 419, 433, 465, 690
DpnII	GATC	5 cut(s)	393, 417, 431, 463, 688
DraI	TTTAAA	1 cut(s)	894
Ecl136II	GAGCTC	2 cut(s)	592, 653
Eco130I	CCWWGG	2 cut(s)	19, 138
Eco147I	AGGCCT	1 cut(s)	255
Eco24I	GRGCYC	3 cut(s)	161, 594, 655
Eco32I	GATATC	1 cut(s)	817
Eco47I	GGWCC	3 cut(s)	119, 321, 804
Eco53kI	GAGCTC	2 cut(s)	592, 653
Eco88I	CYCGRG	3 cut(s)	287, 611, 800
EcoICRI	GAGCTC	2 cut(s)	592, 653
EcoRII	CCWGG	1 cut(s)	777
EcoRV	GATATC	1 cut(s)	817
EcoT14I	CCWWGG	2 cut(s)	19, 138
EcoT22I	ATGCAT	2 cut(s)	666, 670
EcoT38I	GRGCYC	3 cut(s)	161, 594, 655
ErhI	CCWWGG	2 cut(s)	19, 138
Esp3I	CGTCTC	1 cut(s)	803
FaeI	CATG	5 cut(s)	113, 668, 679, 848, 879
FalI	AAGNNNNNCTT	2 cut(s)	887, 919
FaqI	GGGAC	2 cut(s)	398, 817
FatI	CATG	5 cut(s)	109, 664, 675, 844, 875
FauNDI	CATATG	1 cut(s)	506
FblI	GTMKAC	1 cut(s)	246
Fnu4HI	GCNGC	4 cut(s)	90, 93, 499, 631
FokI	GGATG	5 cut(s)	287, 311, 572, 584, 599
FriOI	GRGCYC	3 cut(s)	161, 594, 655
Fsp4HI	GCNGC	4 cut(s)	90, 93, 499, 631
FspBI	CTAG	1 cut(s)	317
GlaI	GCGC	3 cut(s)	404, 453, 629
GluI	GCNGC	4 cut(s)	90, 93, 499, 631
GsaI	CCCAGC	1 cut(s)	579
HaeII	RGCGCY	1 cut(s)	455
HaeIII	GGCC	2 cut(s)	255, 707
HapII	CCGG	5 cut(s)	165, 335, 595, 612, 708
HgaI	GACGC	2 cut(s)	400, 478
HhaI	GCGC	3 cut(s)	405, 454, 630
Hin1II	CATG	5 cut(s)	113, 668, 679, 848, 879
Hin6I	GCGC	3 cut(s)	403, 452, 628
HinP1I	GCGC	3 cut(s)	403, 452, 628
HindIII	AAGCTT	1 cut(s)	901
HinfI	GANTC	1 cut(s)	736
HpaII	CCGG	5 cut(s)	165, 335, 595, 612, 708
HphI	GGTGA	2 cut(s)	227, 302
Hpy166II	GTNNAC	1 cut(s)	247
Hpy188I	TCNGA	4 cut(s)	232, 468, 550, 825
Hpy188III	TCNNGA	4 cut(s)	397, 415, 656, 802
Hpy8I	GTNNAC	1 cut(s)	247
Hpy99I	CGWCG	2 cut(s)	472, 642
HpyCH4III	ACNGT	2 cut(s)	215, 352
HpyCH4IV	ACGT	1 cut(s)	796
HpyCH4V	TGCA	7 cut(s)	109, 355, 664, 668, 784, 844, 875
HpyF10VI	GCNNNNNNNGC	3 cut(s)	650, 704, 872
HpyF3I	CTNAG	5 cut(s)	196, 473, 657, 747, 771
HpySE526I	ACGT	1 cut(s)	796
Hsp92II	CATG	5 cut(s)	113, 668, 679, 848, 879
HspAI	GCGC	3 cut(s)	403, 452, 628
Kzo9I	GATC	5 cut(s)	393, 417, 431, 463, 688
LmnI	GCTCC	4 cut(s)	13, 597, 650, 658
Lsp1109I	GCAGC	3 cut(s)	101, 104, 485
LweI	GCATC	3 cut(s)	309, 562, 651
MaeI	CTAG	1 cut(s)	317
MaeII	ACGT	1 cut(s)	796
MaeIII	GTNAC	3 cut(s)	206, 265, 832
MalI	GATC	5 cut(s)	395, 419, 433, 465, 690
MboI	GATC	5 cut(s)	393, 417, 431, 463, 688
MboII	GAAGA	2 cut(s)	359, 473
MflI	RGATCY	2 cut(s)	431, 463
MhlI	GDGCHC	5 cut(s)	161, 378, 534, 594, 655
MluCI	AATT	4 cut(s)	36, 101, 789, 920
MmeI	TCCRAC	3 cut(s)	255, 459, 491
MnlI	CCTC	5 cut(s)	290, 314, 395, 442, 697
Mph1103I	ATGCAT	2 cut(s)	666, 670
MseI	TTAA	2 cut(s)	35, 893
MslI	CAYNNNNRTG	1 cut(s)	114
MspI	CCGG	5 cut(s)	165, 335, 595, 612, 708
MspR9I	CCNGG	6 cut(s)	166, 335, 596, 612, 613, 779
Mva1269I	GAATGC	1 cut(s)	633
MvaI	CCWGG	1 cut(s)	779
MvnI	CGCG	2 cut(s)	411, 630
MwoI	GCNNNNNNNGC	3 cut(s)	650, 704, 872
NciI	CCSGG	5 cut(s)	166, 335, 596, 612, 613
NdeI	CATATG	1 cut(s)	506
NdeII	GATC	5 cut(s)	393, 417, 431, 463, 688
NlaIII	CATG	5 cut(s)	113, 668, 679, 848, 879
NlaIV	GGNNCC	4 cut(s)	322, 433, 479, 805
NmuCI	GTSAC	2 cut(s)	265, 832
NsiI	ATGCAT	2 cut(s)	666, 670
NspI	RCATGY	2 cut(s)	113, 668
PaeI	GCATGC	2 cut(s)	113, 668
PaqCI	CACCTGC	1 cut(s)	321
PceI	AGGCCT	1 cut(s)	255
PctI	GAATGC	1 cut(s)	633
PfeI	GAWTC	1 cut(s)	736
PfoI	TCCNGGA	1 cut(s)	594
PkrI	GCNGC	4 cut(s)	91, 94, 500, 632
PshAI	GACNNNNGTC	1 cut(s)	363
PshBI	ATTAAT	1 cut(s)	35
Psp124BI	GAGCTC	2 cut(s)	594, 655
Psp6I	CCWGG	1 cut(s)	777
PspFI	CCCAGC	1 cut(s)	575
PspGI	CCWGG	1 cut(s)	777
PspN4I	GGNNCC	4 cut(s)	322, 433, 479, 805
PspPI	GGNCC	3 cut(s)	119, 321, 804
PsuI	RGATCY	2 cut(s)	431, 463
RseI	CAYNNNNRTG	1 cut(s)	114
SacI	GAGCTC	2 cut(s)	594, 655
SaqAI	TTAA	2 cut(s)	35, 893
SatI	GCNGC	4 cut(s)	90, 93, 499, 631
Sau3AI	GATC	5 cut(s)	393, 417, 431, 463, 688
Sau96I	GGNCC	3 cut(s)	119, 321, 804
ScrFI	CCNGG	6 cut(s)	166, 335, 596, 612, 613, 779
SduI	GDGCHC	5 cut(s)	161, 378, 534, 594, 655
SfaNI	GCATC	3 cut(s)	309, 562, 651
SinI	GGWCC	3 cut(s)	119, 321, 804
SmaI	CCCGGG	1 cut(s)	613
SmiMI	CAYNNNNRTG	1 cut(s)	114
SphI	GCATGC	2 cut(s)	113, 668
Sse9I	AATT	4 cut(s)	36, 101, 789, 920
SseBI	AGGCCT	1 cut(s)	255
SsiI	CCGC	2 cut(s)	409, 630
SspMI	CTAG	1 cut(s)	317
SstI	GAGCTC	2 cut(s)	594, 655
StuI	AGGCCT	1 cut(s)	255
StyD4I	CCNGG	6 cut(s)	164, 333, 594, 610, 611, 777
StyI	CCWWGG	2 cut(s)	19, 138
TaaI	ACNGT	2 cut(s)	215, 352
TaiI	ACGT	1 cut(s)	799
TaqI	TCGA	5 cut(s)	161, 192, 387, 447, 459
TasI	AATT	4 cut(s)	36, 101, 789, 920
TauI	GCSGC	1 cut(s)	633
TfiI	GAWTC	1 cut(s)	736
Tru1I	TTAA	2 cut(s)	35, 893
Tru9I	TTAA	2 cut(s)	35, 893
TseFI	GTSAC	2 cut(s)	265, 832
TseI	GCWGC	3 cut(s)	89, 92, 498
Tsp45I	GTSAC	2 cut(s)	265, 832
TspDTI	ATGAA	3 cut(s)	493, 576, 664
TspMI	CCCGGG	1 cut(s)	611
VpaK11BI	GGWCC	3 cut(s)	119, 321, 804
VspI	ATTAAT	1 cut(s)	35
XapI	RAATTY	2 cut(s)	101, 920
XceI	RCATGY	2 cut(s)	113, 668
XmaI	CCCGGG	1 cut(s)	611
XmiI	GTMKAC	1 cut(s)	246
XspI	CTAG	1 cut(s)	317
Zsp2I	ATGCAT	2 cut(s)	666, 670

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.