Rw6G028790

Adenylate isopentenyltransferase 3

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Forward (+)
52859028 .. 52860695
1668 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G028790.1

Sequence Viewer

Length: 1026 bp
ATGACCATGAACATGATGACAATGTGCAAACAAACACAGACGTTACCAAACGTCCCTCTGTCCATTGGCTGCGGGCACAGCCACAACCTCCTCGATGTGTTGAATGTCCACCGCCAGAAGGATAAGGTGGTGATCGTAATGGGTGCCACCGGGACGGGCAAGTCAAAGCTCTCCATCGACCTGGCCACCCGCTTCCCGGCCGAAATCATCAACTCCGACAAAATGCAACTCTACAAGGGCCTTGACATCGCCACCAACAAAATATCACCTCAAGAACAACGCGGCGTCCCCCACCATTTGCTTGGAGTTTTAGACCCCAATGCGGATTTCTCTGCCGATGACTTCTGTGGCGTCACCTGCCGGACCGTCGAGTCGATCGTAAACCGCGACCGGCTTCCAATCATCGTTGGAGGCTCGAACTCGTACATAGAGGCGTTGATCGACGGCTACGATAAGATGGCGTTGATCGACGGCTACGATAAGATGTTCCGGTCAAGATATGACTGCTGCTTTCTCTGGGTGGATGTATCCTTACCCGTTTTGCAATCTTTTGTTTCCGACCGGGTCGATCAGATGGTGGAGAACGGAATGGTGGAGGAGGTGAGAGAGTTCTTTGATCCGAATGCGGATTATACAAAAGGGATCAGAAGGGCTATCGGTGTGCCGGAGTTTAATGACTTTTTCCGGTATGGTCCGTCTTTGGATGAGAAAACTAGAGCCTGGTTACTTGAACAAGCGATAAATGAAGTAAAAGACAATACATGCAAGTTGGCAGGTAGGCAATTGGAGAAGATTCGAAGACTTAGGAATAAAGGGTGGAGTCTGCATCCACTTGATGCCACTGAGGTGTTCCGGAAGCGTGGCAAGGAGGCTGATGAGGCCTGGGACAGGCTGGTTTCGGGGCCAAGCGCAGTGATTGTTCGCCAATTTCTTTACAATGTCAAGGCCGAAGTTCCCACAAATCTCACTGCCATCAGGGTTCCGGCCGCAATGGAAACTGCAGCTCTTGCGGCTGCAACTTACTAG

Protein Analysis

341

Amino Acids

38.27

Weight (kDa)

6.34

Isoelectric Point (pI)

32.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IPT PF01745 42 - 147 2.1e-06 Isopentenyl transferase
IPPT PF01715 76 - 153 8.3e-24 IPP transferase
IPPT PF01715 165 - 266 6.9e-14 IPP transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 365
AasI GACNNNNNNGTC 2 cut(s) 160, 370
Acc36I ACCTGC 2 cut(s) 365, 764
AccB1I GGYRCC 1 cut(s) 143
AccII CGCG 2 cut(s) 282, 387
AccIII TCCGGA 1 cut(s) 852
AciI CCGC 9 cut(s) 72, 112, 190, 282, 323, 385, 626, 987, 1010
AclWI GGATC 2 cut(s) 611, 650
AcoI YGGCCR 3 cut(s) 183, 198, 984
AcyI GRCGYC 2 cut(s) 285, 351
AfaI GTAC 1 cut(s) 425
AfiI CCNNNNNNNGG 4 cut(s) 118, 196, 322, 888
AgsI TTSAA 2 cut(s) 103, 731
AjnI CCWGG 3 cut(s) 180, 719, 881
AjuI GAANNNNNNNTTGG 2 cut(s) 311, 343
AleI CACNNNNGTG 1 cut(s) 845
AluBI AGCT 2 cut(s) 169, 1004
AluI AGCT 2 cut(s) 169, 1004
AlwI GGATC 2 cut(s) 611, 650
Aor13HI TCCGGA 1 cut(s) 852
AoxI GGCC 7 cut(s) 183, 198, 238, 879, 902, 945, 984
ApeKI GCWGC 4 cut(s) 69, 507, 1001, 1013
AspLEI GCGC 1 cut(s) 911
AspS9I GGNCC 4 cut(s) 238, 363, 692, 902
AsuC2I CCSGG 3 cut(s) 151, 197, 563
AsuHPI GGTGA 4 cut(s) 142, 258, 346, 613
AsuII TTCGAA 1 cut(s) 796
AvaII GGWCC 2 cut(s) 363, 692
BaeGI GKGCMC 1 cut(s) 78
BalI TGGCCA 1 cut(s) 185
BanI GGYRCC 1 cut(s) 143
BbsI GAAGAC 1 cut(s) 805
BbvI GCAGC 4 cut(s) 56, 494, 1000, 1013
BccI CCATC 4 cut(s) 182, 451, 568, 980
BceAI ACGGC 2 cut(s) 460, 487
BciT130I CCWGG 3 cut(s) 182, 721, 883
BciVI GTATCC 1 cut(s) 538
BcnI CCSGG 3 cut(s) 151, 197, 563
BfaI CTAG 2 cut(s) 714, 1024
BfmI CTRYAG 1 cut(s) 999
BfuAI ACCTGC 2 cut(s) 365, 764
BfuI GTATCC 1 cut(s) 538
BisI GCNGC 7 cut(s) 70, 283, 508, 987, 1002, 1011, 1014
BlsI GCNGC 7 cut(s) 71, 284, 509, 988, 1003, 1012, 1015
Bme1390I CCNGG 6 cut(s) 151, 182, 197, 563, 721, 883
Bme18I GGWCC 2 cut(s) 363, 692
BmgT120I GGNCC 4 cut(s) 238, 363, 692, 902
BmiI GGNNCC 3 cut(s) 145, 903, 981
BmrFI CCNGG 6 cut(s) 151, 182, 197, 563, 721, 883
BmsI GCATC 2 cut(s) 826, 835
BpiI GAAGAC 1 cut(s) 805
Bpu14I TTCGAA 1 cut(s) 796
BpuEI CTTGAG 1 cut(s) 255
BpuMI CCSGG 3 cut(s) 151, 197, 563
BsaHI GRCGYC 2 cut(s) 285, 351
BsaJI CCNNGG 1 cut(s) 882
BsaWI WCCGGW 3 cut(s) 489, 684, 852
Bsc4I CCNNNNNNNGG 4 cut(s) 118, 196, 322, 888
Bse118I RCCGGY 1 cut(s) 390
Bse3DI GCAATG 1 cut(s) 996
BseAI TCCGGA 1 cut(s) 852
BseBI CCWGG 3 cut(s) 182, 721, 883
BseDI CCNNGG 1 cut(s) 882
BseGI GGATG 3 cut(s) 529, 709, 826
BseLI CCNNNNNNNGG 4 cut(s) 118, 196, 322, 888
BseMI GCAATG 1 cut(s) 996
BseMII CTCAG 1 cut(s) 834
BseRI GAGGAG 2 cut(s) 80, 611
BseSI GKGCMC 1 cut(s) 78
BseX3I CGGCCG 2 cut(s) 198, 984
BseXI GCAGC 4 cut(s) 56, 494, 1000, 1013
Bsh1236I CGCG 2 cut(s) 282, 387
Bsh1285I CGRYCG 5 cut(s) 201, 378, 391, 562, 987
BshFI GGCC 7 cut(s) 185, 200, 240, 881, 904, 947, 986
BshNI GGYRCC 1 cut(s) 143
BsiEI CGRYCG 5 cut(s) 201, 378, 391, 562, 987
BslFI GGGAC 4 cut(s) 38, 166, 272, 899
BslI CCNNNNNNNGG 4 cut(s) 118, 196, 322, 888
BsmFI GGGAC 4 cut(s) 38, 166, 272, 899
BsmI GAATGC 1 cut(s) 628
BsnI GGCC 7 cut(s) 185, 200, 240, 881, 904, 947, 986
Bsp119I TTCGAA 1 cut(s) 796
Bsp1286I GDGCHC 1 cut(s) 78
Bsp13I TCCGGA 1 cut(s) 852
Bsp143I GATC 7 cut(s) 132, 375, 438, 465, 568, 616, 642
BspACI CCGC 9 cut(s) 72, 112, 190, 282, 323, 385, 626, 987, 1010
BspANI GGCC 7 cut(s) 185, 200, 240, 881, 904, 947, 986
BspCNI CTCAG 1 cut(s) 835
BspEI TCCGGA 1 cut(s) 852
BspFNI CGCG 2 cut(s) 282, 387
BspLI GGNNCC 3 cut(s) 145, 903, 981
BspMAI CTGCAG 1 cut(s) 1003
BspMI ACCTGC 2 cut(s) 365, 764
BspPI GGATC 2 cut(s) 611, 650
BspT104I TTCGAA 1 cut(s) 796
BspT107I GGYRCC 1 cut(s) 143
BsrDI GCAATG 1 cut(s) 996
BsrFI RCCGGY 1 cut(s) 390
BssAI RCCGGY 1 cut(s) 390
BssECI CCNNGG 1 cut(s) 882
BssMI GATC 7 cut(s) 132, 375, 438, 465, 568, 616, 642
BssNI GRCGYC 2 cut(s) 285, 351
Bst2UI CCWGG 3 cut(s) 182, 721, 883
Bst4CI ACNGT 1 cut(s) 367
BstACI GRCGYC 2 cut(s) 285, 351
BstAPI GCANNNNNTGC 1 cut(s) 1007
BstBI TTCGAA 1 cut(s) 796
BstC8I GCNNGC 1 cut(s) 74
BstDEI CTNAG 2 cut(s) 803, 843
BstENI CCTNNNNNAGG 1 cut(s) 886
BstF5I GGATG 3 cut(s) 529, 709, 826
BstFNI CGCG 2 cut(s) 282, 387
BstHHI GCGC 1 cut(s) 911
BstKTI GATC 7 cut(s) 135, 378, 441, 468, 571, 619, 645
BstMBI GATC 7 cut(s) 132, 375, 438, 465, 568, 616, 642
BstMCI CGRYCG 5 cut(s) 201, 378, 391, 562, 987
BstMWI GCNNNNNNNGC 5 cut(s) 78, 357, 878, 1007, 1010
BstNI CCWGG 3 cut(s) 182, 721, 883
BstNSI RCATGY 1 cut(s) 765
BstSCI CCNGG 6 cut(s) 149, 180, 195, 561, 719, 881
BstSFI CTRYAG 1 cut(s) 999
BstSLI GKGCMC 1 cut(s) 78
BstUI CGCG 2 cut(s) 282, 387
BstV1I GCAGC 4 cut(s) 56, 494, 1000, 1013
BstV2I GAAGAC 1 cut(s) 805
BstXI CCANNNNNNTGG 2 cut(s) 181, 302
BstZI CGGCCG 2 cut(s) 198, 984
BsuI GTATCC 1 cut(s) 538
BsuRI GGCC 7 cut(s) 185, 200, 240, 881, 904, 947, 986
BtgZI GCGATG 1 cut(s) 232
BtsCI GGATG 3 cut(s) 529, 709, 826
BtsI GCAGTG 2 cut(s) 918, 966
BtsIMutI CAGTG 3 cut(s) 840, 918, 966
BveI ACCTGC 2 cut(s) 365, 764
Cac8I GCNNGC 1 cut(s) 74
CfoI GCGC 1 cut(s) 911
Cfr10I RCCGGY 1 cut(s) 390
Cfr13I GGNCC 4 cut(s) 238, 363, 692, 902
CpoI CGGWCCG 1 cut(s) 363
CseI GACGC 2 cut(s) 274, 340
Csp6I GTAC 1 cut(s) 424
CspI CGGWCCG 1 cut(s) 363
CviAII CATG 3 cut(s) 7, 13, 762
CviQI GTAC 1 cut(s) 424
DdeI CTNAG 2 cut(s) 803, 843
DpnI GATC 7 cut(s) 134, 377, 440, 467, 570, 618, 644
DpnII GATC 7 cut(s) 132, 375, 438, 465, 568, 616, 642
DrdI GACNNNNNNGTC 2 cut(s) 160, 370
DseDI GACNNNNNNGTC 2 cut(s) 160, 370
EaeI YGGCCR 3 cut(s) 183, 198, 984
EagI CGGCCG 2 cut(s) 198, 984
EclXI CGGCCG 2 cut(s) 198, 984
Eco147I AGGCCT 1 cut(s) 881
Eco47I GGWCC 2 cut(s) 363, 692
Eco52I CGGCCG 2 cut(s) 198, 984
EcoNI CCTNNNNNAGG 1 cut(s) 886
EcoO109I RGGNCCY 1 cut(s) 238
EcoRII CCWGG 3 cut(s) 180, 719, 881
FaeI CATG 3 cut(s) 10, 16, 765
FaiI YATR 7 cut(s) 8, 14, 428, 501, 633, 690, 763
FaqI GGGAC 4 cut(s) 38, 166, 272, 899
FatI CATG 3 cut(s) 6, 12, 761
FauI CCCGC 2 cut(s) 65, 197
Fnu4HI GCNGC 7 cut(s) 70, 283, 508, 987, 1002, 1011, 1014
FokI GGATG 3 cut(s) 536, 716, 813
Fsp4HI GCNGC 7 cut(s) 70, 283, 508, 987, 1002, 1011, 1014
FspBI CTAG 2 cut(s) 714, 1024
GlaI GCGC 1 cut(s) 910
GluI GCNGC 7 cut(s) 70, 283, 508, 987, 1002, 1011, 1014
HaeIII GGCC 7 cut(s) 185, 200, 240, 881, 904, 947, 986
HgaI GACGC 2 cut(s) 274, 340
HhaI GCGC 1 cut(s) 911
Hin1I GRCGYC 2 cut(s) 285, 351
Hin1II CATG 3 cut(s) 10, 16, 765
Hin6I GCGC 1 cut(s) 909
HinP1I GCGC 1 cut(s) 909
HinfI GANTC 3 cut(s) 371, 793, 820
HphI GGTGA 4 cut(s) 142, 258, 346, 613
Hpy166II GTNNAC 2 cut(s) 109, 382
Hpy188I TCNGA 5 cut(s) 217, 559, 573, 621, 647
Hpy188III TCNNGA 3 cut(s) 272, 495, 853
Hpy8I GTNNAC 2 cut(s) 109, 382
Hpy99I CGWCG 3 cut(s) 371, 446, 473
HpyAV CCTTC 2 cut(s) 112, 642
HpyCH4III ACNGT 1 cut(s) 367
HpyCH4IV ACGT 2 cut(s) 41, 51
HpyCH4V TGCA 7 cut(s) 27, 226, 544, 765, 826, 1001, 1016
HpyF10VI GCNNNNNNNGC 5 cut(s) 78, 357, 878, 1007, 1010
HpyF3I CTNAG 2 cut(s) 803, 843
HpySE526I ACGT 2 cut(s) 41, 51
Hsp92I GRCGYC 2 cut(s) 285, 351
Hsp92II CATG 3 cut(s) 10, 16, 765
HspAI GCGC 1 cut(s) 909
Kpn2I TCCGGA 1 cut(s) 852
Kzo9I GATC 7 cut(s) 132, 375, 438, 465, 568, 616, 642
Lsp1109I GCAGC 4 cut(s) 56, 494, 1000, 1013
LweI GCATC 2 cut(s) 826, 835
MaeI CTAG 2 cut(s) 714, 1024
MaeII ACGT 2 cut(s) 41, 51
MaeIII GTNAC 3 cut(s) 42, 352, 723
MalI GATC 7 cut(s) 134, 377, 440, 467, 570, 618, 644
MboI GATC 7 cut(s) 132, 375, 438, 465, 568, 616, 642
MboII GAAGA 2 cut(s) 802, 810
MfeI CAATTG 1 cut(s) 782
MhlI GDGCHC 1 cut(s) 78
MlsI TGGCCA 1 cut(s) 185
MluCI AATT 2 cut(s) 782, 926
MluNI TGGCCA 1 cut(s) 185
MlyI GAGTC 2 cut(s) 380, 829
MmeI TCCRAC 3 cut(s) 240, 388, 582
Mox20I TGGCCA 1 cut(s) 185
MroI TCCGGA 1 cut(s) 852
MscI TGGCCA 1 cut(s) 185
MseI TTAA 1 cut(s) 672
MslI CAYNNNNRTG 2 cut(s) 11, 845
Msp20I TGGCCA 1 cut(s) 185
MspR9I CCNGG 6 cut(s) 151, 182, 197, 563, 721, 883
MunI CAATTG 1 cut(s) 782
Mva1269I GAATGC 1 cut(s) 628
MvaI CCWGG 3 cut(s) 182, 721, 883
MvnI CGCG 2 cut(s) 282, 387
MwoI GCNNNNNNNGC 5 cut(s) 78, 357, 878, 1007, 1010
NciI CCSGG 3 cut(s) 151, 197, 563
NdeII GATC 7 cut(s) 132, 375, 438, 465, 568, 616, 642
NlaIII CATG 3 cut(s) 10, 16, 765
NlaIV GGNNCC 3 cut(s) 145, 903, 981
NmuCI GTSAC 1 cut(s) 352
NspI RCATGY 1 cut(s) 765
NspV TTCGAA 1 cut(s) 796
OliI CACNNNNGTG 1 cut(s) 845
PaqCI CACCTGC 1 cut(s) 365
PceI AGGCCT 1 cut(s) 881
PcsI WCGNNNNNNNCGW 4 cut(s) 375, 384, 447, 474
PctI GAATGC 1 cut(s) 628
PfeI GAWTC 1 cut(s) 793
PflFI GACNNNGTC 1 cut(s) 563
PkrI GCNGC 7 cut(s) 71, 284, 509, 988, 1003, 1012, 1015
Ple19I CGATCG 1 cut(s) 378
PleI GAGTC 2 cut(s) 379, 828
PpsI GAGTC 2 cut(s) 379, 828
Psp6I CCWGG 3 cut(s) 180, 719, 881
PspGI CCWGG 3 cut(s) 180, 719, 881
PspN4I GGNNCC 3 cut(s) 145, 903, 981
PspPI GGNCC 4 cut(s) 238, 363, 692, 902
PstI CTGCAG 1 cut(s) 1003
PsyI GACNNNGTC 1 cut(s) 563
PvuI CGATCG 1 cut(s) 378
RsaI GTAC 1 cut(s) 425
RsaNI GTAC 1 cut(s) 424
RseI CAYNNNNRTG 2 cut(s) 11, 845
Rsr2I CGGWCCG 1 cut(s) 363
RsrII CGGWCCG 1 cut(s) 363
SaqAI TTAA 1 cut(s) 672
SatI GCNGC 7 cut(s) 70, 283, 508, 987, 1002, 1011, 1014
Sau3AI GATC 7 cut(s) 132, 375, 438, 465, 568, 616, 642
Sau96I GGNCC 4 cut(s) 238, 363, 692, 902
SchI GAGTC 2 cut(s) 380, 829
ScrFI CCNGG 6 cut(s) 151, 182, 197, 563, 721, 883
SduI GDGCHC 1 cut(s) 78
SfaNI GCATC 2 cut(s) 826, 835
SfcI CTRYAG 1 cut(s) 999
SfuI TTCGAA 1 cut(s) 796
SinI GGWCC 2 cut(s) 363, 692
SmiMI CAYNNNNRTG 2 cut(s) 11, 845
SmlI CTYRAG 1 cut(s) 270
SmoI CTYRAG 1 cut(s) 270
Sse9I AATT 2 cut(s) 782, 926
SseBI AGGCCT 1 cut(s) 881
SsiI CCGC 9 cut(s) 72, 112, 190, 282, 323, 385, 626, 987, 1010
SspMI CTAG 2 cut(s) 714, 1024
StuI AGGCCT 1 cut(s) 881
StyD4I CCNGG 6 cut(s) 149, 180, 195, 561, 719, 881
TaaI ACNGT 1 cut(s) 367
TaiI ACGT 2 cut(s) 44, 54
TaqI TCGA 9 cut(s) 93, 177, 369, 374, 416, 441, 468, 567, 796
TasI AATT 2 cut(s) 782, 926
TauI GCSGC 3 cut(s) 285, 989, 1013
TfiI GAWTC 1 cut(s) 793
Tru1I TTAA 1 cut(s) 672
Tru9I TTAA 1 cut(s) 672
TscAI CASTG 3 cut(s) 847, 918, 973
TseFI GTSAC 1 cut(s) 352
TseI GCWGC 4 cut(s) 69, 507, 1001, 1013
Tsp45I GTSAC 1 cut(s) 352
TspDTI ATGAA 2 cut(s) 23, 759
TspGWI ACGGA 2 cut(s) 600, 684
TspRI CASTG 3 cut(s) 847, 918, 973
Tth111I GACNNNGTC 1 cut(s) 563
VpaK11BI GGWCC 2 cut(s) 363, 692
XagI CCTNNNNNAGG 1 cut(s) 886
XceI RCATGY 1 cut(s) 765
XcmI CCANNNNNNNNNTGG 1 cut(s) 299
XspI CTAG 2 cut(s) 714, 1024
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.