Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004930

Physical Location & Seq

Genomic Coordinates Reverse (-)

51551327 .. 51553092

Gene Structure 1766 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0368000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGAGAATCCGACGATTTTCAGAGGCAGTTATCTAAATGGAGCTTACCAGCCTCCCCTATCTTCTTCTTCTTCTTCTCGCGCTGATGTCAATTACAGCTGTGGTGCTTGTGGTTATGAGCTAAACCTGAGCTCTAATAACCGGAACACATCTTTGATTGGCTCTAATAAGTACGGGAAATCTATAAAGAGAGGGATCATATCGTTCTTTTACATTGATGAGAGCAGATTTAGTCAGGTTGATGAACTTCAGTGTAAGCCCCATTTCTCTAGGCGTTCTTGGGGTCTGTTCAGCCGGAGAACTAAACTTCTTTGTCGCAAGTGCGGTAACCATATAGGAAATGCTTATGATGATTTTACTTCTCCGGCTTCGTACCCACTCGTATCAGATGGATCAGATTCTTCATCCTCAGGCCGTCAAATTTCCAAATGCAGAAAATATGATGTTAGAATTCGCTCTTTGCAGCCTTCGAATTCTGAAGAATGTGGCCCTTCGTTTTTGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009058 GO:0009308 GO:0009451 GO:0009536 GO:0009690 GO:0009691 GO:0009824 GO:0009987 GO:0010467 GO:0010817 GO:0016070 GO:0016740 GO:0016765 GO:0034470 GO:0034641 GO:0034660 GO:0034754 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0052381 GO:0052622 GO:0052623 GO:0065007 GO:0065008 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00908 ko01100 ko01110 map00908 map01100 map01110

Pfam Domains

Protein Families

IPPT

Protein Analysis

168

Amino Acids

18.73

Weight (kDa)

9.12

Isoelectric Point (pI)

64.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
At4g08330	PF24046	25 - 157	1.1e-52	At4g08330 beta-tent

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0004930)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63110
fragaria_vesca	FvH4_2g23840
malus_domestica	MD00G1084500.v1.1 MD03G1267900.v1.1 MD11G1288800.v1.1
prunus_persica	Prupe.5G047700_v2.0.a1 Prupe.8G243600_v2.0.a1
pyrus_communis	pycom06g03440
rosa_chinensis	RchiOBHm_Chr6g0291431 RchiOBHm_Chr6g0308751
rosa_laevigata	RLG00000010623 RLG00000010625 RLG00000012115
rosa_multiflora	Rmu_sc0003735.1_g000032
rosa_roxburghii	Rroxscaffold_7G00159980 Rroxscaffold_7G00176060
rosa_rugosa	Rorug06G0219300 Rorug06G0368000
rosa_samantha	Rh6AG331600 Rh6AG479000 Rh6AG479100 Rh6BG338500 Rh6BG488600 Rh6BG488700 Rh6CG344700 Rh6CG493900 Rh6DG331600 Rh6DG479500
rosa_wichuraiana	Rw6G028790 Rw6G041750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	81
AciI	CCGC	1 cut(s)	324
AclWI	GGATC	2 cut(s)	203, 400
AcsI	RAATTY	3 cut(s)	420, 450, 472
AcuI	CTGAAG	2 cut(s)	233, 498
AfaI	GTAC	2 cut(s)	173, 374
AluBI	AGCT	4 cut(s)	44, 99, 121, 132
AluI	AGCT	4 cut(s)	44, 99, 121, 132
Alw21I	GWGCWC	1 cut(s)	134
AlwI	GGATC	2 cut(s)	203, 400
AoxI	GGCC	2 cut(s)	412, 487
ApeKI	GCWGC	1 cut(s)	463
ApoI	RAATTY	3 cut(s)	420, 450, 472
AspLEI	GCGC	1 cut(s)	83
AspS9I	GGNCC	1 cut(s)	488
AsuII	TTCGAA	1 cut(s)	470
AxyI	CCTNAGG	1 cut(s)	409
BanII	GRGCYC	1 cut(s)	134
Bbv12I	GWGCWC	1 cut(s)	134
BbvI	GCAGC	1 cut(s)	475
BccI	CCATC	1 cut(s)	383
BceAI	ACGGC	1 cut(s)	399
BfaI	CTAG	1 cut(s)	270
BisI	GCNGC	1 cut(s)	464
BlsI	GCNGC	1 cut(s)	465
BmgT120I	GGNCC	1 cut(s)	488
Bpu10I	CCTNAGC	1 cut(s)	128
Bpu14I	TTCGAA	1 cut(s)	470
BsaWI	WCCGGW	1 cut(s)	141
Bse21I	CCTNAGG	1 cut(s)	409
BseGI	GGATG	1 cut(s)	404
BseMII	CTCAG	2 cut(s)	119, 423
BseXI	GCAGC	1 cut(s)	475
Bsh1236I	CGCG	1 cut(s)	81
BshFI	GGCC	2 cut(s)	414, 489
BsiHKAI	GWGCWC	1 cut(s)	134
BsiSI	CCGG	3 cut(s)	142, 295, 365
BsnI	GGCC	2 cut(s)	414, 489
Bsp119I	TTCGAA	1 cut(s)	470
Bsp1286I	GDGCHC	1 cut(s)	134
Bsp143I	GATC	2 cut(s)	195, 392
BspACI	CCGC	1 cut(s)	324
BspANI	GGCC	2 cut(s)	414, 489
BspCNI	CTCAG	2 cut(s)	120, 422
BspFNI	CGCG	1 cut(s)	81
BspPI	GGATC	2 cut(s)	203, 400
BspT104I	TTCGAA	1 cut(s)	470
BssMI	GATC	2 cut(s)	195, 392
BstBI	TTCGAA	1 cut(s)	470
BstDEI	CTNAG	2 cut(s)	128, 409
BstEII	GGTNACC	1 cut(s)	326
BstF5I	GGATG	1 cut(s)	404
BstFNI	CGCG	1 cut(s)	81
BstHHI	GCGC	1 cut(s)	83
BstKTI	GATC	2 cut(s)	198, 395
BstMBI	GATC	2 cut(s)	195, 392
BstPI	GGTNACC	1 cut(s)	326
BstUI	CGCG	1 cut(s)	81
BstV1I	GCAGC	1 cut(s)	475
Bsu36I	CCTNAGG	1 cut(s)	409
BsuRI	GGCC	2 cut(s)	414, 489
BtsCI	GGATG	1 cut(s)	404
BtsIMutI	CAGTG	1 cut(s)	257
CfoI	GCGC	1 cut(s)	83
Cfr13I	GGNCC	1 cut(s)	488
Csp6I	GTAC	2 cut(s)	172, 373
CviQI	GTAC	2 cut(s)	172, 373
DdeI	CTNAG	2 cut(s)	128, 409
DpnI	GATC	2 cut(s)	197, 394
DpnII	GATC	2 cut(s)	195, 392
Ecl136II	GAGCTC	1 cut(s)	132
Eco24I	GRGCYC	1 cut(s)	134
Eco53kI	GAGCTC	1 cut(s)	132
Eco57I	CTGAAG	2 cut(s)	233, 498
Eco81I	CCTNAGG	1 cut(s)	409
Eco91I	GGTNACC	1 cut(s)	326
EcoICRI	GAGCTC	1 cut(s)	132
EcoO65I	GGTNACC	1 cut(s)	326
EcoRI	GAATTC	2 cut(s)	450, 472
EcoT38I	GRGCYC	1 cut(s)	134
FaiI	YATR	7 cut(s)	117, 185, 200, 333, 335, 348, 441
Fnu4HI	GCNGC	1 cut(s)	464
FokI	GGATG	1 cut(s)	391
FriOI	GRGCYC	1 cut(s)	134
Fsp4HI	GCNGC	1 cut(s)	464
FspBI	CTAG	1 cut(s)	270
GlaI	GCGC	1 cut(s)	82
GluI	GCNGC	1 cut(s)	464
HaeIII	GGCC	2 cut(s)	414, 489
HapII	CCGG	3 cut(s)	142, 295, 365
HhaI	GCGC	1 cut(s)	83
Hin6I	GCGC	1 cut(s)	81
HinP1I	GCGC	1 cut(s)	81
HinfI	GANTC	2 cut(s)	7, 398
HpaII	CCGG	3 cut(s)	142, 295, 365
Hpy188I	TCNGA	5 cut(s)	12, 23, 388, 397, 478
Hpy99I	CGWCG	1 cut(s)	16
HpyAV	CCTTC	2 cut(s)	477, 501
HpyCH4V	TGCA	2 cut(s)	432, 463
HpyF3I	CTNAG	2 cut(s)	128, 409
HspAI	GCGC	1 cut(s)	81
Kzo9I	GATC	2 cut(s)	195, 392
LmnI	GCTCC	1 cut(s)	41
LpnPI	CCDG	7 cut(s)	62, 140, 155, 221, 308, 378, 396
Lsp1109I	GCAGC	1 cut(s)	475
MaeI	CTAG	1 cut(s)	270
MaeIII	GTNAC	1 cut(s)	326
MalI	GATC	2 cut(s)	197, 394
MboI	GATC	2 cut(s)	195, 392
MboII	GAAGA	7 cut(s)	54, 57, 60, 63, 66, 393, 491
MhlI	GDGCHC	1 cut(s)	134
MluCI	AATT	4 cut(s)	91, 420, 450, 472
MmeI	TCCRAC	1 cut(s)	35
MnlI	CCTC	4 cut(s)	17, 63, 185, 418
MspA1I	CMGCKG	1 cut(s)	99
MspI	CCGG	3 cut(s)	142, 295, 365
MvnI	CGCG	1 cut(s)	81
NdeII	GATC	2 cut(s)	195, 392
NspV	TTCGAA	1 cut(s)	470
PfeI	GAWTC	2 cut(s)	7, 398
PkrI	GCNGC	1 cut(s)	465
Psp124BI	GAGCTC	1 cut(s)	134
PspEI	GGTNACC	1 cut(s)	326
PspPI	GGNCC	1 cut(s)	488
PvuII	CAGCTG	1 cut(s)	99
RsaI	GTAC	2 cut(s)	173, 374
RsaNI	GTAC	2 cut(s)	172, 373
SacI	GAGCTC	1 cut(s)	134
SatI	GCNGC	1 cut(s)	464
Sau3AI	GATC	2 cut(s)	195, 392
Sau96I	GGNCC	1 cut(s)	488
SduI	GDGCHC	1 cut(s)	134
SetI	ASST	6 cut(s)	46, 101, 123, 129, 134, 240
SfuI	TTCGAA	1 cut(s)	470
Sse9I	AATT	4 cut(s)	91, 420, 450, 472
SsiI	CCGC	1 cut(s)	324
SspMI	CTAG	1 cut(s)	270
SstI	GAGCTC	1 cut(s)	134
TaqI	TCGA	1 cut(s)	470
TasI	AATT	4 cut(s)	91, 420, 450, 472
TfiI	GAWTC	2 cut(s)	7, 398
TscAI	CASTG	1 cut(s)	257
TseI	GCWGC	1 cut(s)	463
TspDTI	ATGAA	2 cut(s)	258, 393
TspRI	CASTG	1 cut(s)	257
XapI	RAATTY	3 cut(s)	420, 450, 472
XspI	CTAG	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.