Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0004930

Physical Location & Seq

Genomic Coordinates Reverse (-)

66050843 .. 66051456

Gene Structure 614 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG479000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGCTCGATGCTTCCTTAGTTCCTTACCAGTAATATATGCTCATGTGTCAAGAAGAGTTGATCAGATGGTGGAGCCAGGTGTTGTGAATGAGCTAAGACGATTTTGTGTTCCCGGGGTTGATTATGAACGTGGCATCCGACGAGCGATTGAAGCTCAGGAGATGGATCCCTTTTTCATGGCGGAGAGAAATAATGAAGATGAGGATACCAAGATGTCATTGCTTGAAGCTGGCATCAAAGATATTAAGGAAAACACCTGCAAGCTCGTTGATCGCCAAACAGAAAAGATTCGACGTCTGAAGGATGAACTTGGATGGGACATTCATCGACTTGATGTAACATGTGTGCATCAGAGACGTGGAGAAGAAGCTGAGAATGCATGGAGAGCTTTTGTTTTGGAACCGAGTTTGGCTATTGTGGAATGTTTTTTGAAGAATTTTCCTTATCCAGGACAGTCAAAAGTCAAAACCTACGTGGTCTATGTTCGGGAAAATAAAAAAATTGCAGCGTTGAGAAATCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009058 GO:0009308 GO:0009451 GO:0009536 GO:0009690 GO:0009691 GO:0009824 GO:0009987 GO:0010467 GO:0010817 GO:0016070 GO:0016740 GO:0016765 GO:0034470 GO:0034641 GO:0034660 GO:0034754 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0052381 GO:0052622 GO:0052623 GO:0065007 GO:0065008 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00908 ko01100 ko01110 map00908 map01100 map01110

Pfam Domains

Protein Families

IPPT

Protein Analysis

174

Amino Acids

20.32

Weight (kDa)

7.63

Isoelectric Point (pI)

51.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IPPT	PF01715	7 - 98	6.3e-08	IPP transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004930)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63110
fragaria_vesca	FvH4_2g23840
malus_domestica	MD00G1084500.v1.1 MD03G1267900.v1.1 MD11G1288800.v1.1
prunus_persica	Prupe.5G047700_v2.0.a1 Prupe.8G243600_v2.0.a1
pyrus_communis	pycom06g03440
rosa_chinensis	RchiOBHm_Chr6g0291431 RchiOBHm_Chr6g0308751
rosa_laevigata	RLG00000010623 RLG00000010625 RLG00000012115
rosa_multiflora	Rmu_sc0003735.1_g000032
rosa_roxburghii	Rroxscaffold_7G00159980 Rroxscaffold_7G00176060
rosa_rugosa	Rorug06G0219300 Rorug06G0368000
rosa_samantha	Rh6AG331600 Rh6AG479000 Rh6AG479100 Rh6BG338500 Rh6BG488600 Rh6BG488700 Rh6CG344700 Rh6CG493900 Rh6DG331600 Rh6DG479500
rosa_wichuraiana	Rw6G028790 Rw6G041750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	266
AatII	GACGTC	1 cut(s)	298
Acc36I	ACCTGC	1 cut(s)	266
AciI	CCGC	1 cut(s)	182
AclWI	GGATC	2 cut(s)	161, 174
AcsI	RAATTY	1 cut(s)	436
AcuI	CTGAAG	1 cut(s)	320
AcyI	GRCGYC	1 cut(s)	295
AfiI	CCNNNNNNNGG	1 cut(s)	449
AflIII	ACRYGT	1 cut(s)	341
AgsI	TTSAA	3 cut(s)	152, 227, 433
AjiI	CACGTC	1 cut(s)	359
AjnI	CCWGG	2 cut(s)	76, 448
AloI	GAACNNNNNNTCC	2 cut(s)	120, 152
AluBI	AGCT	6 cut(s)	94, 155, 230, 265, 371, 389
AluI	AGCT	6 cut(s)	94, 155, 230, 265, 371, 389
Alw26I	GTCTC	1 cut(s)	349
AlwI	GGATC	2 cut(s)	161, 174
Ama87I	CYCGRG	1 cut(s)	113
ApeKI	GCWGC	1 cut(s)	506
ApoI	RAATTY	1 cut(s)	436
Asp700I	GAANNNNTTC	1 cut(s)	288
AsuC2I	CCSGG	2 cut(s)	114, 115
AvaI	CYCGRG	1 cut(s)	113
BamHI	GGATCC	1 cut(s)	166
BbvI	GCAGC	1 cut(s)	518
BccI	CCATC	3 cut(s)	61, 157, 309
BciT130I	CCWGG	2 cut(s)	78, 450
BciVI	GTATCC	1 cut(s)	199
BclI	TGATCA	1 cut(s)	61
BcnI	CCSGG	2 cut(s)	114, 115
BcoDI	GTCTC	1 cut(s)	349
BfuAI	ACCTGC	1 cut(s)	266
BfuI	GTATCC	1 cut(s)	199
BisI	GCNGC	1 cut(s)	507
BlsI	GCNGC	1 cut(s)	508
Bme1390I	CCNGG	4 cut(s)	78, 114, 115, 450
BmeT110I	CYCGRG	1 cut(s)	113
BmgBI	CACGTC	1 cut(s)	359
BmiI	GGNNCC	3 cut(s)	75, 168, 402
BmrFI	CCNGG	4 cut(s)	78, 114, 115, 450
BmsI	GCATC	3 cut(s)	144, 243, 358
Bpu10I	CCTNAGC	1 cut(s)	156
BpuMI	CCSGG	2 cut(s)	114, 115
BsaAI	YACGTR	1 cut(s)	475
BsaHI	GRCGYC	1 cut(s)	295
BsaJI	CCNNGG	2 cut(s)	113, 114
Bsc4I	CCNNNNNNNGG	1 cut(s)	449
Bse1I	ACTGG	1 cut(s)	29
Bse3DI	GCAATG	1 cut(s)	218
BseBI	CCWGG	2 cut(s)	78, 450
BseDI	CCNNGG	2 cut(s)	113, 114
BseGI	GGATG	3 cut(s)	135, 310, 320
BseLI	CCNNNNNNNGG	1 cut(s)	449
BseMI	GCAATG	1 cut(s)	218
BseMII	CTCAG	2 cut(s)	170, 363
BseNI	ACTGG	1 cut(s)	29
BseXI	GCAGC	1 cut(s)	518
BsiHKCI	CYCGRG	1 cut(s)	113
BsiSI	CCGG	1 cut(s)	114
BslFI	GGGAC	1 cut(s)	332
BslI	CCNNNNNNNGG	1 cut(s)	449
BsmAI	GTCTC	1 cut(s)	349
BsmBI	CGTCTC	1 cut(s)	349
BsmFI	GGGAC	1 cut(s)	332
BsmI	GAATGC	1 cut(s)	382
BsoBI	CYCGRG	1 cut(s)	113
Bsp143I	GATC	3 cut(s)	61, 166, 271
BspACI	CCGC	1 cut(s)	182
BspCNI	CTCAG	2 cut(s)	169, 364
BspLI	GGNNCC	3 cut(s)	75, 168, 402
BspMI	ACCTGC	1 cut(s)	266
BspPI	GGATC	2 cut(s)	161, 174
BsrDI	GCAATG	1 cut(s)	218
BsrI	ACTGG	1 cut(s)	29
BssECI	CCNNGG	2 cut(s)	113, 114
BssMI	GATC	3 cut(s)	61, 166, 271
BssNI	GRCGYC	1 cut(s)	295
Bst2UI	CCWGG	2 cut(s)	78, 450
Bst4CI	ACNGT	1 cut(s)	456
Bst6I	CTCTTC	1 cut(s)	49
BstACI	GRCGYC	1 cut(s)	295
BstBAI	YACGTR	1 cut(s)	475
BstC8I	GCNNGC	2 cut(s)	232, 263
BstDEI	CTNAG	4 cut(s)	17, 95, 156, 372
BstENI	CCTNNNNNAGG	1 cut(s)	447
BstF5I	GGATG	3 cut(s)	135, 310, 320
BstKTI	GATC	3 cut(s)	64, 169, 274
BstMAI	GTCTC	1 cut(s)	349
BstMBI	GATC	3 cut(s)	61, 166, 271
BstMWI	GCNNNNNNNGC	3 cut(s)	152, 377, 386
BstNI	CCWGG	2 cut(s)	78, 450
BstNSI	RCATGY	1 cut(s)	345
BstSCI	CCNGG	4 cut(s)	76, 112, 113, 448
BstV1I	GCAGC	1 cut(s)	518
BstX2I	RGATCY	1 cut(s)	166
BstYI	RGATCY	1 cut(s)	166
BsuI	GTATCC	1 cut(s)	199
BtrI	CACGTC	1 cut(s)	359
BtsCI	GGATG	3 cut(s)	135, 310, 320
BveI	ACCTGC	1 cut(s)	266
Cac8I	GCNNGC	2 cut(s)	232, 263
Cfr9I	CCCGGG	1 cut(s)	113
CviAII	CATG	4 cut(s)	44, 178, 342, 381
CviJI	RGCY	9 cut(s)	5, 76, 94, 155, 230, 265, 371, 389, 413
CviKI_1	RGCY	9 cut(s)	5, 76, 94, 155, 230, 265, 371, 389, 413
DdeI	CTNAG	4 cut(s)	17, 95, 156, 372
DpnI	GATC	3 cut(s)	63, 168, 273
DpnII	GATC	3 cut(s)	61, 166, 271
Eam1104I	CTCTTC	1 cut(s)	49
EarI	CTCTTC	1 cut(s)	49
EciI	GGCGGA	1 cut(s)	197
Eco57I	CTGAAG	1 cut(s)	320
Eco88I	CYCGRG	1 cut(s)	113
EcoNI	CCTNNNNNAGG	1 cut(s)	447
EcoRII	CCWGG	2 cut(s)	76, 448
EcoT22I	ATGCAT	1 cut(s)	382
Esp3I	CGTCTC	1 cut(s)	349
FaeI	CATG	4 cut(s)	47, 181, 345, 384
FaiI	YATR	8 cut(s)	37, 39, 45, 126, 179, 343, 382, 483
FaqI	GGGAC	1 cut(s)	332
FatI	CATG	4 cut(s)	43, 177, 341, 380
FbaI	TGATCA	1 cut(s)	61
Fnu4HI	GCNGC	1 cut(s)	507
FokI	GGATG	3 cut(s)	122, 317, 327
Fsp4HI	GCNGC	1 cut(s)	507
GluI	GCNGC	1 cut(s)	507
HapII	CCGG	1 cut(s)	114
Hin1I	GRCGYC	1 cut(s)	295
Hin1II	CATG	4 cut(s)	47, 181, 345, 384
HinfI	GANTC	1 cut(s)	289
HpaII	CCGG	1 cut(s)	114
Hpy188I	TCNGA	5 cut(s)	66, 140, 300, 354, 524
Hpy188III	TCNNGA	3 cut(s)	51, 158, 488
Hpy99I	CGWCG	2 cut(s)	144, 297
HpyAV	CCTTC	1 cut(s)	295
HpyCH4III	ACNGT	1 cut(s)	456
HpyCH4IV	ACGT	4 cut(s)	130, 295, 358, 474
HpyCH4V	TGCA	4 cut(s)	261, 349, 380, 506
HpyF10VI	GCNNNNNNNGC	3 cut(s)	152, 377, 386
HpyF3I	CTNAG	4 cut(s)	17, 95, 156, 372
HpySE526I	ACGT	4 cut(s)	130, 295, 358, 474
Hsp92I	GRCGYC	1 cut(s)	295
Hsp92II	CATG	4 cut(s)	47, 181, 345, 384
Ksp22I	TGATCA	1 cut(s)	61
Kzo9I	GATC	3 cut(s)	61, 166, 271
LmnI	GCTCC	1 cut(s)	73
LpnPI	CCDG	9 cut(s)	42, 63, 90, 127, 143, 216, 271, 435, 462
Lsp1109I	GCAGC	1 cut(s)	518
LweI	GCATC	3 cut(s)	144, 243, 358
MaeII	ACGT	4 cut(s)	130, 295, 358, 474
MaeIII	GTNAC	1 cut(s)	337
MalI	GATC	3 cut(s)	63, 168, 273
MboI	GATC	3 cut(s)	61, 166, 271
MboII	GAAGA	4 cut(s)	66, 209, 377, 445
MflI	RGATCY	1 cut(s)	166
MluCI	AATT	2 cut(s)	436, 501
MmeI	TCCRAC	1 cut(s)	163
MnlI	CCTC	1 cut(s)	196
Mph1103I	ATGCAT	1 cut(s)	382
MroXI	GAANNNNTTC	1 cut(s)	288
MseI	TTAA	1 cut(s)	246
MspI	CCGG	1 cut(s)	114
MspR9I	CCNGG	4 cut(s)	78, 114, 115, 450
Mva1269I	GAATGC	1 cut(s)	382
MvaI	CCWGG	2 cut(s)	78, 450
MwoI	GCNNNNNNNGC	3 cut(s)	152, 377, 386
NciI	CCSGG	2 cut(s)	114, 115
NdeII	GATC	3 cut(s)	61, 166, 271
NlaIII	CATG	4 cut(s)	47, 181, 345, 384
NlaIV	GGNNCC	3 cut(s)	75, 168, 402
NsiI	ATGCAT	1 cut(s)	382
NspI	RCATGY	1 cut(s)	345
PaqCI	CACCTGC	1 cut(s)	266
PciI	ACATGT	1 cut(s)	341
PcsI	WCGNNNNNNNCGW	1 cut(s)	136
PctI	GAATGC	1 cut(s)	382
PdmI	GAANNNNTTC	1 cut(s)	288
PfeI	GAWTC	1 cut(s)	289
PfoI	TCCNGGA	1 cut(s)	448
PkrI	GCNGC	1 cut(s)	508
Ppu21I	YACGTR	1 cut(s)	475
PscI	ACATGT	1 cut(s)	341
Psp6I	CCWGG	2 cut(s)	76, 448
PspGI	CCWGG	2 cut(s)	76, 448
PspN4I	GGNNCC	3 cut(s)	75, 168, 402
PsuI	RGATCY	1 cut(s)	166
SaqAI	TTAA	1 cut(s)	246
SatI	GCNGC	1 cut(s)	507
Sau3AI	GATC	3 cut(s)	61, 166, 271
ScrFI	CCNGG	4 cut(s)	78, 114, 115, 450
SfaNI	GCATC	3 cut(s)	144, 243, 358
SmaI	CCCGGG	1 cut(s)	115
Sse9I	AATT	2 cut(s)	436, 501
SsiI	CCGC	1 cut(s)	182
StyD4I	CCNGG	4 cut(s)	76, 112, 113, 448
TaaI	ACNGT	1 cut(s)	456
TaiI	ACGT	4 cut(s)	133, 298, 361, 477
TaqI	TCGA	3 cut(s)	7, 292, 328
TasI	AATT	2 cut(s)	436, 501
TfiI	GAWTC	1 cut(s)	289
Tru1I	TTAA	1 cut(s)	246
Tru9I	TTAA	1 cut(s)	246
TseI	GCWGC	1 cut(s)	506
TspDTI	ATGAA	5 cut(s)	141, 166, 210, 314, 321
TspMI	CCCGGG	1 cut(s)	113
XagI	CCTNNNNNAGG	1 cut(s)	447
XapI	RAATTY	1 cut(s)	436
XceI	RCATGY	1 cut(s)	345
XmaI	CCCGGG	1 cut(s)	113
XmnI	GAANNNNTTC	1 cut(s)	288
ZraI	GACGTC	1 cut(s)	296
Zsp2I	ATGCAT	1 cut(s)	382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.