Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0004930

Physical Location & Seq

Genomic Coordinates Forward (+)

3017476 .. 3018399

Gene Structure 924 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00159980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGGGATCTACCAAAGGTGCGGAACTCCTCACGAACAAGGAGAAGGTCATTTTCATCATGGGATCGACTGGATCCGGAAAAACCAAACTCTCTGTAGATTTAGCCCTACAGTTTAAGGGCGAGATCATCAATTCTGACAAAATTCAAGTCTACAAAGGTGGCGATATTATTACTAATAAAGTCTCGGAGATCGAGCGCCGAGGAATCCGCCACCATTTGCTAGGGTTTATTGAAGACACTGAGGAGGACTTCACCATAGAAGATTTTTGCCACCATGTCCAAGGTACCATTAAAGAAATTATCAACCGCAATTCGATCCCAATCATTGCAGGTGGATCAAACTCGTACATCGAGGCACTCGTTGAAGATCCAAAAATTAATTTTCGAGCTAAATATGATTGTTGCTTCCTATGGCTCGATGCTTTCTTACCAGTAATATATGCTCATGTGTCAAGAAGAGTTGATCAGATGGTGGAGGCAGGTGTTGTGAATGAGCTAAGACGATTGTGTGTTCCCGGGGCTGATTATGAACGTGGCATCCGACGAGCGATTGGAGCTCCGGAGATGGATCCCTTTTTCATGGCGGAGAGAAATAATGAAGATCAGGATACCAAGATGTCATTGCTTGAAGCTGGCATCAAAGATATTAAGGAAAACACCTGCAAGCTCGTTGATCGCCAAACAGAAAAGATTCGACGTCTGAAGGATGAACTTGGATGGGACATTCATCGACTTGATGTAACATGTGTGCATCAGAGACGTGGAGAAGAAGCTGAGAATGCATGGAGAGCTTTTGTTTTGGAACCGAGTTTGGCTATTGTGGAATGTTTTTTGAAGAATTTTCCTTATCCAGGACAGTCAAAACCTACGTGGTCTATGTTCGGGAAAATTTTTAACAAAATTGCAGCGTTGAGAAATCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009058 GO:0009308 GO:0009451 GO:0009536 GO:0009690 GO:0009691 GO:0009824 GO:0009987 GO:0010467 GO:0010817 GO:0016070 GO:0016740 GO:0016765 GO:0034470 GO:0034641 GO:0034660 GO:0034754 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0052381 GO:0052622 GO:0052623 GO:0065007 GO:0065008 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00908 ko01100 ko01110 map00908 map01100 map01110

Pfam Domains

Protein Families

IPPT

Protein Analysis

307

Amino Acids

34.95

Weight (kDa)

6.22

Isoelectric Point (pI)

43.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IPT	PF01745	15 - 159	2.1e-06	Isopentenyl transferase
IPPT	PF01715	49 - 124	6.7e-20	IPP transferase
IPPT	PF01715	129 - 232	4.6e-11	IPP transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004930)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63110
fragaria_vesca	FvH4_2g23840
malus_domestica	MD00G1084500.v1.1 MD03G1267900.v1.1 MD11G1288800.v1.1
prunus_persica	Prupe.5G047700_v2.0.a1 Prupe.8G243600_v2.0.a1
pyrus_communis	pycom06g03440
rosa_chinensis	RchiOBHm_Chr6g0291431 RchiOBHm_Chr6g0308751
rosa_laevigata	RLG00000010623 RLG00000010625 RLG00000012115
rosa_multiflora	Rmu_sc0003735.1_g000032
rosa_roxburghii	Rroxscaffold_7G00159980 Rroxscaffold_7G00176060
rosa_rugosa	Rorug06G0219300 Rorug06G0368000
rosa_samantha	Rh6AG331600 Rh6AG479000 Rh6AG479100 Rh6BG338500 Rh6BG488600 Rh6BG488700 Rh6CG344700 Rh6CG493900 Rh6DG331600 Rh6DG479500
rosa_wichuraiana	Rw6G028790 Rw6G041750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	3 cut(s)	320, 470, 668
AatII	GACGTC	1 cut(s)	700
Acc36I	ACCTGC	3 cut(s)	320, 470, 668
Acc65I	GGTACC	1 cut(s)	284
AccB1I	GGYRCC	1 cut(s)	284
AccI	GTMKAC	1 cut(s)	150
AccIII	TCCGGA	2 cut(s)	74, 559
AciI	CCGC	4 cut(s)	20, 208, 307, 584
AclWI	GGATC	9 cut(s)	13, 66, 70, 79, 310, 343, 362, 563, 576
AcsI	RAATTY	3 cut(s)	141, 838, 888
AcuI	CTGAAG	1 cut(s)	722
AcyI	GRCGYC	1 cut(s)	697
AfaI	GTAC	2 cut(s)	286, 347
AfiI	CCNNNNNNNGG	1 cut(s)	851
AflIII	ACRYGT	1 cut(s)	743
AgsI	TTSAA	5 cut(s)	146, 233, 365, 629, 835
AjiI	CACGTC	1 cut(s)	761
AjnI	CCWGG	1 cut(s)	850
AloI	GAACNNNNNNTCC	2 cut(s)	522, 554
AluBI	AGCT	7 cut(s)	389, 496, 557, 632, 667, 773, 791
AluI	AGCT	7 cut(s)	389, 496, 557, 632, 667, 773, 791
Alw21I	GWGCWC	1 cut(s)	559
Alw26I	GTCTC	2 cut(s)	187, 751
AlwI	GGATC	9 cut(s)	13, 66, 70, 79, 310, 343, 362, 563, 576
Ama87I	CYCGRG	1 cut(s)	515
Aor13HI	TCCGGA	2 cut(s)	74, 559
ApeKI	GCWGC	1 cut(s)	905
ApoI	RAATTY	3 cut(s)	141, 838, 888
ArsI	GACNNNNNNTTYG	2 cut(s)	132, 164
AseI	ATTAAT	1 cut(s)	378
Asp700I	GAANNNNTTC	1 cut(s)	690
Asp718I	GGTACC	1 cut(s)	284
AspLEI	GCGC	1 cut(s)	198
AsuC2I	CCSGG	2 cut(s)	516, 517
AsuHPI	GGTGA	1 cut(s)	244
AvaI	CYCGRG	1 cut(s)	515
BamHI	GGATCC	2 cut(s)	71, 568
BanI	GGYRCC	1 cut(s)	284
BanII	GRGCYC	1 cut(s)	559
BbsI	GAAGAC	1 cut(s)	240
Bbv12I	GWGCWC	1 cut(s)	559
BbvI	GCAGC	1 cut(s)	917
BccI	CCATC	3 cut(s)	463, 559, 711
BciT130I	CCWGG	1 cut(s)	852
BciVI	GTATCC	1 cut(s)	601
BclI	TGATCA	1 cut(s)	463
BcnI	CCSGG	2 cut(s)	516, 517
BcoDI	GTCTC	2 cut(s)	187, 751
BfaI	CTAG	1 cut(s)	221
BfmI	CTRYAG	2 cut(s)	93, 107
BfoI	RGCGCY	1 cut(s)	199
BfuAI	ACCTGC	3 cut(s)	320, 470, 668
BfuI	GTATCC	1 cut(s)	601
BisI	GCNGC	1 cut(s)	906
BlsI	GCNGC	1 cut(s)	907
Bme1390I	CCNGG	3 cut(s)	516, 517, 852
BmeT110I	CYCGRG	1 cut(s)	515
BmgBI	CACGTC	1 cut(s)	761
BmiI	GGNNCC	4 cut(s)	73, 286, 570, 804
BmrFI	CCNGG	3 cut(s)	516, 517, 852
BmsI	GCATC	4 cut(s)	409, 546, 645, 760
BpiI	GAAGAC	1 cut(s)	240
BpuMI	CCSGG	2 cut(s)	516, 517
BsaAI	YACGTR	1 cut(s)	870
BsaBI	GATNNNNATC	1 cut(s)	320
BsaHI	GRCGYC	1 cut(s)	697
BsaJI	CCNNGG	4 cut(s)	199, 280, 515, 516
BsaWI	WCCGGW	2 cut(s)	74, 559
Bsc4I	CCNNNNNNNGG	1 cut(s)	851
Bse1I	ACTGG	2 cut(s)	73, 431
Bse3DI	GCAATG	2 cut(s)	324, 620
Bse8I	GATNNNNATC	1 cut(s)	320
BseAI	TCCGGA	2 cut(s)	74, 559
BseBI	CCWGG	1 cut(s)	852
BseDI	CCNNGG	4 cut(s)	199, 280, 515, 516
BseGI	GGATG	3 cut(s)	537, 712, 722
BseJI	GATNNNNATC	1 cut(s)	320
BseLI	CCNNNNNNNGG	1 cut(s)	851
BseMI	GCAATG	2 cut(s)	324, 620
BseMII	CTCAG	2 cut(s)	231, 765
BseNI	ACTGG	2 cut(s)	73, 431
BseRI	GAGGAG	2 cut(s)	17, 257
BseXI	GCAGC	1 cut(s)	917
BshNI	GGYRCC	1 cut(s)	284
BsiHKAI	GWGCWC	1 cut(s)	559
BsiHKCI	CYCGRG	1 cut(s)	515
BsiSI	CCGG	3 cut(s)	75, 516, 560
BslFI	GGGAC	1 cut(s)	734
BslI	CCNNNNNNNGG	1 cut(s)	851
BsmAI	GTCTC	2 cut(s)	187, 751
BsmBI	CGTCTC	1 cut(s)	751
BsmFI	GGGAC	1 cut(s)	734
BsmI	GAATGC	1 cut(s)	784
BsoBI	CYCGRG	1 cut(s)	515
Bsp1286I	GDGCHC	1 cut(s)	559
Bsp13I	TCCGGA	2 cut(s)	74, 559
BspACI	CCGC	4 cut(s)	20, 208, 307, 584
BspCNI	CTCAG	2 cut(s)	232, 766
BspEI	TCCGGA	2 cut(s)	74, 559
BspLI	GGNNCC	4 cut(s)	73, 286, 570, 804
BspMI	ACCTGC	3 cut(s)	320, 470, 668
BspPI	GGATC	9 cut(s)	13, 66, 70, 79, 310, 343, 362, 563, 576
BspT107I	GGYRCC	1 cut(s)	284
BsrDI	GCAATG	2 cut(s)	324, 620
BsrI	ACTGG	2 cut(s)	73, 431
BssECI	CCNNGG	4 cut(s)	199, 280, 515, 516
BssNI	GRCGYC	1 cut(s)	697
BssT1I	CCWWGG	1 cut(s)	280
Bst2UI	CCWGG	1 cut(s)	852
Bst4CI	ACNGT	2 cut(s)	111, 858
Bst6I	CTCTTC	1 cut(s)	451
BstACI	GRCGYC	1 cut(s)	697
BstBAI	YACGTR	1 cut(s)	870
BstC8I	GCNNGC	2 cut(s)	634, 665
BstDEI	CTNAG	3 cut(s)	240, 497, 774
BstENI	CCTNNNNNAGG	1 cut(s)	849
BstF5I	GGATG	3 cut(s)	537, 712, 722
BstH2I	RGCGCY	1 cut(s)	199
BstHHI	GCGC	1 cut(s)	198
BstMAI	GTCTC	2 cut(s)	187, 751
BstMWI	GCNNNNNNNGC	3 cut(s)	554, 779, 788
BstNI	CCWGG	1 cut(s)	852
BstNSI	RCATGY	1 cut(s)	747
BstSCI	CCNGG	3 cut(s)	514, 515, 850
BstSFI	CTRYAG	2 cut(s)	93, 107
BstV1I	GCAGC	1 cut(s)	917
BstV2I	GAAGAC	1 cut(s)	240
BstX2I	RGATCY	4 cut(s)	5, 71, 367, 568
BstYI	RGATCY	4 cut(s)	5, 71, 367, 568
BsuI	GTATCC	1 cut(s)	601
BtrI	CACGTC	1 cut(s)	761
BtsCI	GGATG	3 cut(s)	537, 712, 722
BtsIMutI	CAGTG	1 cut(s)	237
BveI	ACCTGC	3 cut(s)	320, 470, 668
Cac8I	GCNNGC	2 cut(s)	634, 665
CfoI	GCGC	1 cut(s)	198
Cfr9I	CCCGGG	1 cut(s)	515
Csp6I	GTAC	2 cut(s)	285, 346
CviAII	CATG	6 cut(s)	58, 275, 446, 580, 744, 783
CviQI	GTAC	2 cut(s)	285, 346
DdeI	CTNAG	3 cut(s)	240, 497, 774
Eam1104I	CTCTTC	1 cut(s)	451
EarI	CTCTTC	1 cut(s)	451
EciI	GGCGGA	2 cut(s)	197, 599
Ecl136II	GAGCTC	1 cut(s)	557
Eco130I	CCWWGG	1 cut(s)	280
Eco24I	GRGCYC	1 cut(s)	559
Eco53kI	GAGCTC	1 cut(s)	557
Eco57I	CTGAAG	1 cut(s)	722
Eco88I	CYCGRG	1 cut(s)	515
EcoICRI	GAGCTC	1 cut(s)	557
EcoNI	CCTNNNNNAGG	1 cut(s)	849
EcoRII	CCWGG	1 cut(s)	850
EcoT14I	CCWWGG	1 cut(s)	280
EcoT22I	ATGCAT	1 cut(s)	784
EcoT38I	GRGCYC	1 cut(s)	559
ErhI	CCWWGG	1 cut(s)	280
Esp3I	CGTCTC	1 cut(s)	751
FaeI	CATG	6 cut(s)	61, 278, 449, 583, 747, 786
FaqI	GGGAC	1 cut(s)	734
FatI	CATG	6 cut(s)	57, 274, 445, 579, 743, 782
FbaI	TGATCA	1 cut(s)	463
FblI	GTMKAC	1 cut(s)	150
Fnu4HI	GCNGC	1 cut(s)	906
FokI	GGATG	3 cut(s)	524, 719, 729
FriOI	GRGCYC	1 cut(s)	559
Fsp4HI	GCNGC	1 cut(s)	906
FspBI	CTAG	1 cut(s)	221
GlaI	GCGC	1 cut(s)	197
GluI	GCNGC	1 cut(s)	906
HaeII	RGCGCY	1 cut(s)	199
HapII	CCGG	3 cut(s)	75, 516, 560
HhaI	GCGC	1 cut(s)	198
Hin1I	GRCGYC	1 cut(s)	697
Hin1II	CATG	6 cut(s)	61, 278, 449, 583, 747, 786
Hin6I	GCGC	1 cut(s)	196
HinP1I	GCGC	1 cut(s)	196
HinfI	GANTC	2 cut(s)	204, 691
HpaII	CCGG	3 cut(s)	75, 516, 560
HphI	GGTGA	1 cut(s)	244
Hpy166II	GTNNAC	1 cut(s)	151
Hpy188I	TCNGA	7 cut(s)	136, 187, 468, 542, 702, 756, 923
Hpy188III	TCNNGA	6 cut(s)	31, 75, 453, 560, 605, 883
Hpy8I	GTNNAC	1 cut(s)	151
Hpy99I	CGWCG	2 cut(s)	546, 699
HpyAV	CCTTC	2 cut(s)	37, 697
HpyCH4III	ACNGT	2 cut(s)	111, 858
HpyCH4IV	ACGT	4 cut(s)	532, 697, 760, 869
HpyCH4V	TGCA	5 cut(s)	329, 663, 751, 782, 905
HpyF10VI	GCNNNNNNNGC	3 cut(s)	554, 779, 788
HpyF3I	CTNAG	3 cut(s)	240, 497, 774
HpySE526I	ACGT	4 cut(s)	532, 697, 760, 869
Hsp92I	GRCGYC	1 cut(s)	697
Hsp92II	CATG	6 cut(s)	61, 278, 449, 583, 747, 786
HspAI	GCGC	1 cut(s)	196
Kpn2I	TCCGGA	2 cut(s)	74, 559
KpnI	GGTACC	1 cut(s)	288
Ksp22I	TGATCA	1 cut(s)	463
LmnI	GCTCC	2 cut(s)	554, 562
Lsp1109I	GCAGC	1 cut(s)	917
LweI	GCATC	4 cut(s)	409, 546, 645, 760
MaeI	CTAG	1 cut(s)	221
MaeII	ACGT	4 cut(s)	532, 697, 760, 869
MaeIII	GTNAC	1 cut(s)	739
MboII	GAAGA	7 cut(s)	245, 272, 377, 468, 611, 779, 847
MflI	RGATCY	4 cut(s)	5, 71, 367, 568
MhlI	GDGCHC	1 cut(s)	559
MluCI	AATT	9 cut(s)	130, 141, 297, 310, 375, 379, 838, 888, 900
MmeI	TCCRAC	1 cut(s)	565
MnlI	CCTC	6 cut(s)	38, 194, 235, 238, 346, 469
Mph1103I	ATGCAT	1 cut(s)	784
MroI	TCCGGA	2 cut(s)	74, 559
MroXI	GAANNNNTTC	1 cut(s)	690
MseI	TTAA	5 cut(s)	114, 291, 378, 648, 894
MspI	CCGG	3 cut(s)	75, 516, 560
MspR9I	CCNGG	3 cut(s)	516, 517, 852
Mva1269I	GAATGC	1 cut(s)	784
MvaI	CCWGG	1 cut(s)	852
MwoI	GCNNNNNNNGC	3 cut(s)	554, 779, 788
NciI	CCSGG	2 cut(s)	516, 517
NlaIII	CATG	6 cut(s)	61, 278, 449, 583, 747, 786
NlaIV	GGNNCC	4 cut(s)	73, 286, 570, 804
NmeAIII	GCCGAG	1 cut(s)	224
NsiI	ATGCAT	1 cut(s)	784
NspI	RCATGY	1 cut(s)	747
PaqCI	CACCTGC	3 cut(s)	320, 470, 668
PciI	ACATGT	1 cut(s)	743
PcsI	WCGNNNNNNNCGW	2 cut(s)	357, 538
PctI	GAATGC	1 cut(s)	784
PdmI	GAANNNNTTC	1 cut(s)	690
PfeI	GAWTC	2 cut(s)	204, 691
PfoI	TCCNGGA	1 cut(s)	850
PkrI	GCNGC	1 cut(s)	907
Ppu21I	YACGTR	1 cut(s)	870
PscI	ACATGT	1 cut(s)	743
PshBI	ATTAAT	1 cut(s)	378
Psp124BI	GAGCTC	1 cut(s)	559
Psp6I	CCWGG	1 cut(s)	850
PspGI	CCWGG	1 cut(s)	850
PspN4I	GGNNCC	4 cut(s)	73, 286, 570, 804
PsuI	RGATCY	4 cut(s)	5, 71, 367, 568
RsaI	GTAC	2 cut(s)	286, 347
RsaNI	GTAC	2 cut(s)	285, 346
SacI	GAGCTC	1 cut(s)	559
SaqAI	TTAA	5 cut(s)	114, 291, 378, 648, 894
SatI	GCNGC	1 cut(s)	906
ScrFI	CCNGG	3 cut(s)	516, 517, 852
SduI	GDGCHC	1 cut(s)	559
SfaNI	GCATC	4 cut(s)	409, 546, 645, 760
SfcI	CTRYAG	2 cut(s)	93, 107
SmaI	CCCGGG	1 cut(s)	517
Sse9I	AATT	9 cut(s)	130, 141, 297, 310, 375, 379, 838, 888, 900
SsiI	CCGC	4 cut(s)	20, 208, 307, 584
SspMI	CTAG	1 cut(s)	221
SstI	GAGCTC	1 cut(s)	559
StyD4I	CCNGG	3 cut(s)	514, 515, 850
StyI	CCWWGG	1 cut(s)	280
TaaI	ACNGT	2 cut(s)	111, 858
TaiI	ACGT	4 cut(s)	535, 700, 763, 872
TaqI	TCGA	8 cut(s)	65, 192, 314, 351, 385, 417, 694, 730
TasI	AATT	9 cut(s)	130, 141, 297, 310, 375, 379, 838, 888, 900
TfiI	GAWTC	2 cut(s)	204, 691
Tru1I	TTAA	5 cut(s)	114, 291, 378, 648, 894
Tru9I	TTAA	5 cut(s)	114, 291, 378, 648, 894
TscAI	CASTG	1 cut(s)	244
TseI	GCWGC	1 cut(s)	905
TspDTI	ATGAA	6 cut(s)	43, 543, 568, 612, 716, 723
TspMI	CCCGGG	1 cut(s)	515
TspRI	CASTG	1 cut(s)	244
VspI	ATTAAT	1 cut(s)	378
XagI	CCTNNNNNAGG	1 cut(s)	849
XapI	RAATTY	3 cut(s)	141, 838, 888
XceI	RCATGY	1 cut(s)	747
XmaI	CCCGGG	1 cut(s)	515
XmiI	GTMKAC	1 cut(s)	150
XmnI	GAANNNNTTC	1 cut(s)	690
XspI	CTAG	1 cut(s)	221
ZraI	GACGTC	1 cut(s)	698
Zsp2I	ATGCAT	1 cut(s)	784

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.