Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003735.1

Orthogroup ID

OG0004930

Physical Location & Seq

Genomic Coordinates Forward (+)

135177 .. 136187

Gene Structure 1011 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003735.1_g000032.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

atgaccatgaacatgatgacaatgtgcaaacaaacacagacgttaccaaacgtccctctgtccattggctgcgggcacagccacaacctcctcgatgtgttgaatgtccaccgccagaaggataaggtggtgatcgtaatgggtgccaccgggacgggcaagtcaaagctctccatcgacctggccacccgcttcccggccgaaatcatcaactccgacaaaatgcaactctacaagggccttgacatcgccaccaacaaaatatcacctcaagaacaacgcggcgtcccccaccatttgcttggagttttagaccccaatgcggattactctgccgatgacttctgtggcgtcacctgccggaccgtcgagtcgatcgtaaaccgcgaccggcttccaatcatcgttggaggctcgaactcgtacatagaggcgttgatcgacggctacgataagatggcgttgatcgacggctacgataagatgttccggtcaagatatgactgctgctttctctgggtggatgtatccttacccgttttgcaatcttttgtttccgaccgggtcgatcagatggtggagaacggaatggtggaggaggtgagagagttctttgatccgaatgcggattatacaaaagggatcagaagggctatcggtgtgccggagtttaatgactttttccggtatgagaaaactagagcctggttacttgaacaagcgataaatgaagtaaaagacaatacatgcaagttggcaggtaggcaattggagaagattcgaagacttaggaataaagggtggagtctgcatccacttgatgccactgaggtgttccggaagcgtggcaaggaggctgatgaggcctgggacaggctggtttcggggccaagcgcagtgattgttcgccaatttctttacaatgtcaaggccgaagttcccacaaatctcactgccatcagggttccggccgcaatggaaactgcagctcttgcggctgcaacttactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009058 GO:0009308 GO:0009451 GO:0009536 GO:0009690 GO:0009691 GO:0009824 GO:0009987 GO:0010467 GO:0010817 GO:0016070 GO:0016740 GO:0016765 GO:0034470 GO:0034641 GO:0034660 GO:0034754 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0052381 GO:0052622 GO:0052623 GO:0065007 GO:0065008 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00908 ko01100 ko01110 map00908 map01100 map01110

Pfam Domains

Protein Families

IPPT

Protein Analysis

336

Amino Acids

37.81

Weight (kDa)

6.61

Isoelectric Point (pI)

32.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004930)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63110
fragaria_vesca	FvH4_2g23840
malus_domestica	MD00G1084500.v1.1 MD03G1267900.v1.1 MD11G1288800.v1.1
prunus_persica	Prupe.5G047700_v2.0.a1 Prupe.8G243600_v2.0.a1
pyrus_communis	pycom06g03440
rosa_chinensis	RchiOBHm_Chr6g0291431 RchiOBHm_Chr6g0308751
rosa_laevigata	RLG00000010623 RLG00000010625 RLG00000012115
rosa_multiflora	Rmu_sc0003735.1_g000032
rosa_roxburghii	Rroxscaffold_7G00159980 Rroxscaffold_7G00176060
rosa_rugosa	Rorug06G0219300 Rorug06G0368000
rosa_samantha	Rh6AG331600 Rh6AG479000 Rh6AG479100 Rh6BG338500 Rh6BG488600 Rh6BG488700 Rh6CG344700 Rh6CG493900 Rh6DG331600 Rh6DG479500
rosa_wichuraiana	Rw6G028790 Rw6G041750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	365
AasI	GACNNNNNNGTC	2 cut(s)	160, 370
Acc36I	ACCTGC	2 cut(s)	365, 749
AccB1I	GGYRCC	1 cut(s)	143
AccII	CGCG	2 cut(s)	282, 387
AccIII	TCCGGA	1 cut(s)	837
AciI	CCGC	9 cut(s)	72, 112, 190, 282, 323, 385, 626, 972, 995
AclWI	GGATC	2 cut(s)	611, 650
AcoI	YGGCCR	3 cut(s)	183, 198, 969
AcyI	GRCGYC	2 cut(s)	285, 351
AfaI	GTAC	1 cut(s)	425
AfiI	CCNNNNNNNGG	4 cut(s)	118, 196, 322, 873
AgsI	TTSAA	2 cut(s)	103, 716
AjnI	CCWGG	3 cut(s)	180, 704, 866
AleI	CACNNNNGTG	1 cut(s)	830
AluBI	AGCT	2 cut(s)	169, 989
AluI	AGCT	2 cut(s)	169, 989
AlwI	GGATC	2 cut(s)	611, 650
Aor13HI	TCCGGA	1 cut(s)	837
AoxI	GGCC	7 cut(s)	183, 198, 238, 864, 887, 930, 969
ApeKI	GCWGC	4 cut(s)	69, 507, 986, 998
AspLEI	GCGC	1 cut(s)	896
AspS9I	GGNCC	3 cut(s)	238, 363, 887
AsuC2I	CCSGG	3 cut(s)	151, 197, 563
AsuHPI	GGTGA	4 cut(s)	142, 258, 346, 613
AsuII	TTCGAA	1 cut(s)	781
AvaII	GGWCC	1 cut(s)	363
BaeGI	GKGCMC	1 cut(s)	78
BalI	TGGCCA	1 cut(s)	185
BanI	GGYRCC	1 cut(s)	143
BbsI	GAAGAC	1 cut(s)	790
BbvI	GCAGC	4 cut(s)	56, 494, 985, 998
BccI	CCATC	4 cut(s)	182, 451, 568, 965
BceAI	ACGGC	2 cut(s)	460, 487
BciT130I	CCWGG	3 cut(s)	182, 706, 868
BciVI	GTATCC	1 cut(s)	538
BcnI	CCSGG	3 cut(s)	151, 197, 563
BfaI	CTAG	2 cut(s)	699, 1009
BfmI	CTRYAG	1 cut(s)	984
BfuAI	ACCTGC	2 cut(s)	365, 749
BfuI	GTATCC	1 cut(s)	538
BisI	GCNGC	7 cut(s)	70, 283, 508, 972, 987, 996, 999
BlsI	GCNGC	7 cut(s)	71, 284, 509, 973, 988, 997, 1000
Bme1390I	CCNGG	6 cut(s)	151, 182, 197, 563, 706, 868
Bme18I	GGWCC	1 cut(s)	363
BmgT120I	GGNCC	3 cut(s)	238, 363, 887
BmiI	GGNNCC	3 cut(s)	145, 888, 966
BmrFI	CCNGG	6 cut(s)	151, 182, 197, 563, 706, 868
BmsI	GCATC	2 cut(s)	811, 820
BpiI	GAAGAC	1 cut(s)	790
Bpu14I	TTCGAA	1 cut(s)	781
BpuEI	CTTGAG	1 cut(s)	255
BpuMI	CCSGG	3 cut(s)	151, 197, 563
BsaHI	GRCGYC	2 cut(s)	285, 351
BsaJI	CCNNGG	1 cut(s)	867
BsaWI	WCCGGW	3 cut(s)	489, 684, 837
Bsc4I	CCNNNNNNNGG	4 cut(s)	118, 196, 322, 873
Bse118I	RCCGGY	1 cut(s)	390
Bse3DI	GCAATG	1 cut(s)	981
BseAI	TCCGGA	1 cut(s)	837
BseBI	CCWGG	3 cut(s)	182, 706, 868
BseDI	CCNNGG	1 cut(s)	867
BseGI	GGATG	2 cut(s)	529, 811
BseLI	CCNNNNNNNGG	4 cut(s)	118, 196, 322, 873
BseMI	GCAATG	1 cut(s)	981
BseMII	CTCAG	1 cut(s)	819
BseRI	GAGGAG	2 cut(s)	80, 611
BseSI	GKGCMC	1 cut(s)	78
BseX3I	CGGCCG	2 cut(s)	198, 969
BseXI	GCAGC	4 cut(s)	56, 494, 985, 998
Bsh1236I	CGCG	2 cut(s)	282, 387
Bsh1285I	CGRYCG	5 cut(s)	201, 378, 391, 562, 972
BshFI	GGCC	7 cut(s)	185, 200, 240, 866, 889, 932, 971
BshNI	GGYRCC	1 cut(s)	143
BsiEI	CGRYCG	5 cut(s)	201, 378, 391, 562, 972
BslFI	GGGAC	4 cut(s)	38, 166, 272, 884
BslI	CCNNNNNNNGG	4 cut(s)	118, 196, 322, 873
BsmFI	GGGAC	4 cut(s)	38, 166, 272, 884
BsmI	GAATGC	1 cut(s)	628
BsnI	GGCC	7 cut(s)	185, 200, 240, 866, 889, 932, 971
Bsp119I	TTCGAA	1 cut(s)	781
Bsp1286I	GDGCHC	1 cut(s)	78
Bsp13I	TCCGGA	1 cut(s)	837
Bsp143I	GATC	7 cut(s)	132, 375, 438, 465, 568, 616, 642
BspACI	CCGC	9 cut(s)	72, 112, 190, 282, 323, 385, 626, 972, 995
BspANI	GGCC	7 cut(s)	185, 200, 240, 866, 889, 932, 971
BspCNI	CTCAG	1 cut(s)	820
BspEI	TCCGGA	1 cut(s)	837
BspFNI	CGCG	2 cut(s)	282, 387
BspLI	GGNNCC	3 cut(s)	145, 888, 966
BspMAI	CTGCAG	1 cut(s)	988
BspMI	ACCTGC	2 cut(s)	365, 749
BspPI	GGATC	2 cut(s)	611, 650
BspT104I	TTCGAA	1 cut(s)	781
BspT107I	GGYRCC	1 cut(s)	143
BsrDI	GCAATG	1 cut(s)	981
BsrFI	RCCGGY	1 cut(s)	390
BssAI	RCCGGY	1 cut(s)	390
BssECI	CCNNGG	1 cut(s)	867
BssMI	GATC	7 cut(s)	132, 375, 438, 465, 568, 616, 642
BssNI	GRCGYC	2 cut(s)	285, 351
Bst2UI	CCWGG	3 cut(s)	182, 706, 868
Bst4CI	ACNGT	1 cut(s)	367
BstACI	GRCGYC	2 cut(s)	285, 351
BstAPI	GCANNNNNTGC	1 cut(s)	992
BstBI	TTCGAA	1 cut(s)	781
BstC8I	GCNNGC	1 cut(s)	74
BstDEI	CTNAG	2 cut(s)	788, 828
BstENI	CCTNNNNNAGG	1 cut(s)	871
BstF5I	GGATG	2 cut(s)	529, 811
BstFNI	CGCG	2 cut(s)	282, 387
BstHHI	GCGC	1 cut(s)	896
BstKTI	GATC	7 cut(s)	135, 378, 441, 468, 571, 619, 645
BstMBI	GATC	7 cut(s)	132, 375, 438, 465, 568, 616, 642
BstMCI	CGRYCG	5 cut(s)	201, 378, 391, 562, 972
BstMWI	GCNNNNNNNGC	5 cut(s)	78, 357, 863, 992, 995
BstNI	CCWGG	3 cut(s)	182, 706, 868
BstNSI	RCATGY	1 cut(s)	750
BstSCI	CCNGG	6 cut(s)	149, 180, 195, 561, 704, 866
BstSFI	CTRYAG	1 cut(s)	984
BstSLI	GKGCMC	1 cut(s)	78
BstUI	CGCG	2 cut(s)	282, 387
BstV1I	GCAGC	4 cut(s)	56, 494, 985, 998
BstV2I	GAAGAC	1 cut(s)	790
BstXI	CCANNNNNNTGG	2 cut(s)	181, 302
BstZI	CGGCCG	2 cut(s)	198, 969
BsuI	GTATCC	1 cut(s)	538
BsuRI	GGCC	7 cut(s)	185, 200, 240, 866, 889, 932, 971
BtgZI	GCGATG	1 cut(s)	232
BtsCI	GGATG	2 cut(s)	529, 811
BtsI	GCAGTG	2 cut(s)	903, 951
BtsIMutI	CAGTG	3 cut(s)	825, 903, 951
BveI	ACCTGC	2 cut(s)	365, 749
Cac8I	GCNNGC	1 cut(s)	74
CfoI	GCGC	1 cut(s)	896
Cfr10I	RCCGGY	1 cut(s)	390
Cfr13I	GGNCC	3 cut(s)	238, 363, 887
CpoI	CGGWCCG	1 cut(s)	363
CseI	GACGC	2 cut(s)	274, 340
Csp6I	GTAC	1 cut(s)	424
CspI	CGGWCCG	1 cut(s)	363
CviAII	CATG	3 cut(s)	7, 13, 747
CviQI	GTAC	1 cut(s)	424
DdeI	CTNAG	2 cut(s)	788, 828
DpnI	GATC	7 cut(s)	134, 377, 440, 467, 570, 618, 644
DpnII	GATC	7 cut(s)	132, 375, 438, 465, 568, 616, 642
DrdI	GACNNNNNNGTC	2 cut(s)	160, 370
DseDI	GACNNNNNNGTC	2 cut(s)	160, 370
EaeI	YGGCCR	3 cut(s)	183, 198, 969
EagI	CGGCCG	2 cut(s)	198, 969
EclXI	CGGCCG	2 cut(s)	198, 969
Eco147I	AGGCCT	1 cut(s)	866
Eco47I	GGWCC	1 cut(s)	363
Eco52I	CGGCCG	2 cut(s)	198, 969
EcoNI	CCTNNNNNAGG	1 cut(s)	871
EcoO109I	RGGNCCY	1 cut(s)	238
EcoRII	CCWGG	3 cut(s)	180, 704, 866
FaeI	CATG	3 cut(s)	10, 16, 750
FaiI	YATR	7 cut(s)	8, 14, 428, 501, 633, 690, 748
FaqI	GGGAC	4 cut(s)	38, 166, 272, 884
FatI	CATG	3 cut(s)	6, 12, 746
FauI	CCCGC	2 cut(s)	65, 197
Fnu4HI	GCNGC	7 cut(s)	70, 283, 508, 972, 987, 996, 999
FokI	GGATG	2 cut(s)	536, 798
Fsp4HI	GCNGC	7 cut(s)	70, 283, 508, 972, 987, 996, 999
FspBI	CTAG	2 cut(s)	699, 1009
GlaI	GCGC	1 cut(s)	895
GluI	GCNGC	7 cut(s)	70, 283, 508, 972, 987, 996, 999
HaeIII	GGCC	7 cut(s)	185, 200, 240, 866, 889, 932, 971
HgaI	GACGC	2 cut(s)	274, 340
HhaI	GCGC	1 cut(s)	896
Hin1I	GRCGYC	2 cut(s)	285, 351
Hin1II	CATG	3 cut(s)	10, 16, 750
Hin6I	GCGC	1 cut(s)	894
HinP1I	GCGC	1 cut(s)	894
HinfI	GANTC	3 cut(s)	371, 778, 805
HphI	GGTGA	4 cut(s)	142, 258, 346, 613
Hpy166II	GTNNAC	2 cut(s)	109, 382
Hpy188I	TCNGA	5 cut(s)	217, 559, 573, 621, 647
Hpy188III	TCNNGA	3 cut(s)	272, 495, 838
Hpy8I	GTNNAC	2 cut(s)	109, 382
Hpy99I	CGWCG	3 cut(s)	371, 446, 473
HpyAV	CCTTC	2 cut(s)	112, 642
HpyCH4III	ACNGT	1 cut(s)	367
HpyCH4IV	ACGT	2 cut(s)	41, 51
HpyCH4V	TGCA	7 cut(s)	27, 226, 544, 750, 811, 986, 1001
HpyF10VI	GCNNNNNNNGC	5 cut(s)	78, 357, 863, 992, 995
HpyF3I	CTNAG	2 cut(s)	788, 828
HpySE526I	ACGT	2 cut(s)	41, 51
Hsp92I	GRCGYC	2 cut(s)	285, 351
Hsp92II	CATG	3 cut(s)	10, 16, 750
HspAI	GCGC	1 cut(s)	894
Kpn2I	TCCGGA	1 cut(s)	837
Kzo9I	GATC	7 cut(s)	132, 375, 438, 465, 568, 616, 642
Lsp1109I	GCAGC	4 cut(s)	56, 494, 985, 998
LweI	GCATC	2 cut(s)	811, 820
MaeI	CTAG	2 cut(s)	699, 1009
MaeII	ACGT	2 cut(s)	41, 51
MaeIII	GTNAC	3 cut(s)	42, 352, 708
MalI	GATC	7 cut(s)	134, 377, 440, 467, 570, 618, 644
MboI	GATC	7 cut(s)	132, 375, 438, 465, 568, 616, 642
MboII	GAAGA	2 cut(s)	787, 795
MfeI	CAATTG	1 cut(s)	767
MhlI	GDGCHC	1 cut(s)	78
MlsI	TGGCCA	1 cut(s)	185
MluCI	AATT	2 cut(s)	767, 911
MluNI	TGGCCA	1 cut(s)	185
MlyI	GAGTC	2 cut(s)	380, 814
MmeI	TCCRAC	3 cut(s)	240, 388, 582
Mox20I	TGGCCA	1 cut(s)	185
MroI	TCCGGA	1 cut(s)	837
MscI	TGGCCA	1 cut(s)	185
MseI	TTAA	1 cut(s)	672
MslI	CAYNNNNRTG	2 cut(s)	11, 830
Msp20I	TGGCCA	1 cut(s)	185
MspR9I	CCNGG	6 cut(s)	151, 182, 197, 563, 706, 868
MunI	CAATTG	1 cut(s)	767
Mva1269I	GAATGC	1 cut(s)	628
MvaI	CCWGG	3 cut(s)	182, 706, 868
MvnI	CGCG	2 cut(s)	282, 387
MwoI	GCNNNNNNNGC	5 cut(s)	78, 357, 863, 992, 995
NciI	CCSGG	3 cut(s)	151, 197, 563
NdeII	GATC	7 cut(s)	132, 375, 438, 465, 568, 616, 642
NlaIII	CATG	3 cut(s)	10, 16, 750
NlaIV	GGNNCC	3 cut(s)	145, 888, 966
NmuCI	GTSAC	1 cut(s)	352
NspI	RCATGY	1 cut(s)	750
NspV	TTCGAA	1 cut(s)	781
OliI	CACNNNNGTG	1 cut(s)	830
PaqCI	CACCTGC	1 cut(s)	365
PceI	AGGCCT	1 cut(s)	866
PcsI	WCGNNNNNNNCGW	4 cut(s)	375, 384, 447, 474
PctI	GAATGC	1 cut(s)	628
PfeI	GAWTC	1 cut(s)	778
PflFI	GACNNNGTC	1 cut(s)	563
PkrI	GCNGC	7 cut(s)	71, 284, 509, 973, 988, 997, 1000
Ple19I	CGATCG	1 cut(s)	378
PleI	GAGTC	2 cut(s)	379, 813
PpsI	GAGTC	2 cut(s)	379, 813
Psp6I	CCWGG	3 cut(s)	180, 704, 866
PspGI	CCWGG	3 cut(s)	180, 704, 866
PspN4I	GGNNCC	3 cut(s)	145, 888, 966
PspPI	GGNCC	3 cut(s)	238, 363, 887
PstI	CTGCAG	1 cut(s)	988
PsyI	GACNNNGTC	1 cut(s)	563
PvuI	CGATCG	1 cut(s)	378
RsaI	GTAC	1 cut(s)	425
RsaNI	GTAC	1 cut(s)	424
RseI	CAYNNNNRTG	2 cut(s)	11, 830
Rsr2I	CGGWCCG	1 cut(s)	363
RsrII	CGGWCCG	1 cut(s)	363
SaqAI	TTAA	1 cut(s)	672
SatI	GCNGC	7 cut(s)	70, 283, 508, 972, 987, 996, 999
Sau3AI	GATC	7 cut(s)	132, 375, 438, 465, 568, 616, 642
Sau96I	GGNCC	3 cut(s)	238, 363, 887
SchI	GAGTC	2 cut(s)	380, 814
ScrFI	CCNGG	6 cut(s)	151, 182, 197, 563, 706, 868
SduI	GDGCHC	1 cut(s)	78
SfaNI	GCATC	2 cut(s)	811, 820
SfcI	CTRYAG	1 cut(s)	984
SfuI	TTCGAA	1 cut(s)	781
SinI	GGWCC	1 cut(s)	363
SmiMI	CAYNNNNRTG	2 cut(s)	11, 830
SmlI	CTYRAG	1 cut(s)	270
SmoI	CTYRAG	1 cut(s)	270
Sse9I	AATT	2 cut(s)	767, 911
SseBI	AGGCCT	1 cut(s)	866
SsiI	CCGC	9 cut(s)	72, 112, 190, 282, 323, 385, 626, 972, 995
SspMI	CTAG	2 cut(s)	699, 1009
StuI	AGGCCT	1 cut(s)	866
StyD4I	CCNGG	6 cut(s)	149, 180, 195, 561, 704, 866
TaaI	ACNGT	1 cut(s)	367
TaiI	ACGT	2 cut(s)	44, 54
TaqI	TCGA	9 cut(s)	93, 177, 369, 374, 416, 441, 468, 567, 781
TasI	AATT	2 cut(s)	767, 911
TauI	GCSGC	3 cut(s)	285, 974, 998
TfiI	GAWTC	1 cut(s)	778
Tru1I	TTAA	1 cut(s)	672
Tru9I	TTAA	1 cut(s)	672
TscAI	CASTG	3 cut(s)	832, 903, 958
TseFI	GTSAC	1 cut(s)	352
TseI	GCWGC	4 cut(s)	69, 507, 986, 998
Tsp45I	GTSAC	1 cut(s)	352
TspDTI	ATGAA	2 cut(s)	23, 744
TspGWI	ACGGA	1 cut(s)	600
TspRI	CASTG	3 cut(s)	832, 903, 958
Tth111I	GACNNNGTC	1 cut(s)	563
VpaK11BI	GGWCC	1 cut(s)	363
XagI	CCTNNNNNAGG	1 cut(s)	871
XceI	RCATGY	1 cut(s)	750
XcmI	CCANNNNNNNNNTGG	1 cut(s)	299
XspI	CTAG	2 cut(s)	699, 1009

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.