Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0004930

Physical Location & Seq

Genomic Coordinates Reverse (-)

69249211 .. 69249714

Gene Structure 504 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG488700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGGATCTACCAAAGGTGCGGAACTCCCCACGAACAAGGAGAAGGTCATTTTCATCATGGGATCGACTGGATCCGGAAAAACCAAACTCTCTGTAGATTTAGCCCTACAGTTTAAGGGTGAAATCATCAATTCTGACAAAATTCAAGTCTACAAAGGTGGCGATATTATTACTAATAAAGTCTCGGAGATCGAGCGCCAAGGAATCCGCCACCATTTGCTAGGGTTTATTGAAGACACTGAGGAGGACTTCACCATAGAAGATTTTTGCCACCATGTCCAAGGTACCATTAAAGAAATTATTAACCGCAATTCGATCCCAATCCTTGCAGGTGGATCAAACTCGTACATCGAGGCACTCGTTGAAGATCCAAAAATTAATTTTCGAGCTAAATATGATTGTTGCTTCCTATGGCTCGATGCTTCCTTACCAGTGATATATGCTCATGTGTCAAGAAGAGTTGATCAGATGGTGGAGGCAGGTGTTGTGAATGAGCTAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009058 GO:0009308 GO:0009451 GO:0009536 GO:0009690 GO:0009691 GO:0009824 GO:0009987 GO:0010467 GO:0010817 GO:0016070 GO:0016740 GO:0016765 GO:0034470 GO:0034641 GO:0034660 GO:0034754 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0052381 GO:0052622 GO:0052623 GO:0065007 GO:0065008 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00908 ko01100 ko01110 map00908 map01100 map01110

Pfam Domains

Protein Families

IPPT

Protein Analysis

167

Amino Acids

18.64

Weight (kDa)

5.54

Isoelectric Point (pI)

42.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IPT	PF01745	15 - 159	4.2e-08	Isopentenyl transferase
IPPT	PF01715	49 - 124	1.1e-20	IPP transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0004930)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63110
fragaria_vesca	FvH4_2g23840
malus_domestica	MD00G1084500.v1.1 MD03G1267900.v1.1 MD11G1288800.v1.1
prunus_persica	Prupe.5G047700_v2.0.a1 Prupe.8G243600_v2.0.a1
pyrus_communis	pycom06g03440
rosa_chinensis	RchiOBHm_Chr6g0291431 RchiOBHm_Chr6g0308751
rosa_laevigata	RLG00000010623 RLG00000010625 RLG00000012115
rosa_multiflora	Rmu_sc0003735.1_g000032
rosa_roxburghii	Rroxscaffold_7G00159980 Rroxscaffold_7G00176060
rosa_rugosa	Rorug06G0219300 Rorug06G0368000
rosa_samantha	Rh6AG331600 Rh6AG479000 Rh6AG479100 Rh6BG338500 Rh6BG488600 Rh6BG488700 Rh6CG344700 Rh6CG493900 Rh6DG331600 Rh6DG479500
rosa_wichuraiana	Rw6G028790 Rw6G041750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	320, 470
Acc36I	ACCTGC	2 cut(s)	320, 470
Acc65I	GGTACC	1 cut(s)	284
AccB1I	GGYRCC	1 cut(s)	284
AccI	GTMKAC	1 cut(s)	150
AccIII	TCCGGA	1 cut(s)	74
AciI	CCGC	3 cut(s)	20, 208, 307
AclWI	GGATC	7 cut(s)	13, 66, 70, 79, 310, 343, 362
AcsI	RAATTY	1 cut(s)	141
AfaI	GTAC	2 cut(s)	286, 347
AgsI	TTSAA	3 cut(s)	146, 233, 365
AluBI	AGCT	2 cut(s)	389, 496
AluI	AGCT	2 cut(s)	389, 496
Alw26I	GTCTC	1 cut(s)	187
AlwI	GGATC	7 cut(s)	13, 66, 70, 79, 310, 343, 362
Aor13HI	TCCGGA	1 cut(s)	74
ApoI	RAATTY	1 cut(s)	141
ArsI	GACNNNNNNTTYG	2 cut(s)	132, 164
AseI	ATTAAT	1 cut(s)	378
Asp718I	GGTACC	1 cut(s)	284
AspLEI	GCGC	1 cut(s)	198
AsuHPI	GGTGA	2 cut(s)	131, 244
BamHI	GGATCC	1 cut(s)	71
BanI	GGYRCC	1 cut(s)	284
BbsI	GAAGAC	1 cut(s)	240
BccI	CCATC	1 cut(s)	463
BclI	TGATCA	1 cut(s)	463
BcoDI	GTCTC	1 cut(s)	187
BfaI	CTAG	1 cut(s)	221
BfmI	CTRYAG	2 cut(s)	93, 107
BfoI	RGCGCY	1 cut(s)	199
BfuAI	ACCTGC	2 cut(s)	320, 470
BmiI	GGNNCC	2 cut(s)	73, 286
BmsI	GCATC	1 cut(s)	409
BpiI	GAAGAC	1 cut(s)	240
BsaBI	GATNNNNATC	1 cut(s)	320
BsaJI	CCNNGG	2 cut(s)	199, 280
BsaWI	WCCGGW	1 cut(s)	74
Bse1I	ACTGG	2 cut(s)	73, 431
Bse8I	GATNNNNATC	1 cut(s)	320
BseAI	TCCGGA	1 cut(s)	74
BseDI	CCNNGG	2 cut(s)	199, 280
BseJI	GATNNNNATC	1 cut(s)	320
BseMII	CTCAG	1 cut(s)	231
BseNI	ACTGG	2 cut(s)	73, 431
BseRI	GAGGAG	1 cut(s)	257
BshNI	GGYRCC	1 cut(s)	284
BsiSI	CCGG	1 cut(s)	75
BsmAI	GTCTC	1 cut(s)	187
Bsp13I	TCCGGA	1 cut(s)	74
Bsp143I	GATC	8 cut(s)	5, 62, 71, 189, 315, 335, 367, 463
BspACI	CCGC	3 cut(s)	20, 208, 307
BspCNI	CTCAG	1 cut(s)	232
BspEI	TCCGGA	1 cut(s)	74
BspLI	GGNNCC	2 cut(s)	73, 286
BspMI	ACCTGC	2 cut(s)	320, 470
BspPI	GGATC	7 cut(s)	13, 66, 70, 79, 310, 343, 362
BspT107I	GGYRCC	1 cut(s)	284
BsrI	ACTGG	2 cut(s)	73, 431
BssECI	CCNNGG	2 cut(s)	199, 280
BssMI	GATC	8 cut(s)	5, 62, 71, 189, 315, 335, 367, 463
BssT1I	CCWWGG	2 cut(s)	199, 280
Bst4CI	ACNGT	1 cut(s)	111
Bst6I	CTCTTC	1 cut(s)	451
BstDEI	CTNAG	2 cut(s)	240, 497
BstH2I	RGCGCY	1 cut(s)	199
BstHHI	GCGC	1 cut(s)	198
BstKTI	GATC	8 cut(s)	8, 65, 74, 192, 318, 338, 370, 466
BstMAI	GTCTC	1 cut(s)	187
BstMBI	GATC	8 cut(s)	5, 62, 71, 189, 315, 335, 367, 463
BstSFI	CTRYAG	2 cut(s)	93, 107
BstV2I	GAAGAC	1 cut(s)	240
BstX2I	RGATCY	3 cut(s)	5, 71, 367
BstYI	RGATCY	3 cut(s)	5, 71, 367
BtsIMutI	CAGTG	2 cut(s)	237, 438
BveI	ACCTGC	2 cut(s)	320, 470
CfoI	GCGC	1 cut(s)	198
Csp6I	GTAC	2 cut(s)	285, 346
CviAII	CATG	3 cut(s)	58, 275, 446
CviJI	RGCY	4 cut(s)	104, 389, 415, 496
CviKI_1	RGCY	4 cut(s)	104, 389, 415, 496
CviQI	GTAC	2 cut(s)	285, 346
DdeI	CTNAG	2 cut(s)	240, 497
DpnI	GATC	8 cut(s)	7, 64, 73, 191, 317, 337, 369, 465
DpnII	GATC	8 cut(s)	5, 62, 71, 189, 315, 335, 367, 463
Eam1104I	CTCTTC	1 cut(s)	451
EarI	CTCTTC	1 cut(s)	451
EciI	GGCGGA	1 cut(s)	197
Eco130I	CCWWGG	2 cut(s)	199, 280
EcoT14I	CCWWGG	2 cut(s)	199, 280
ErhI	CCWWGG	2 cut(s)	199, 280
FaeI	CATG	3 cut(s)	61, 278, 449
FaiI	YATR	8 cut(s)	59, 257, 276, 396, 412, 439, 441, 447
FatI	CATG	3 cut(s)	57, 274, 445
FbaI	TGATCA	1 cut(s)	463
FblI	GTMKAC	1 cut(s)	150
FspBI	CTAG	1 cut(s)	221
GlaI	GCGC	1 cut(s)	197
HaeII	RGCGCY	1 cut(s)	199
HapII	CCGG	1 cut(s)	75
HhaI	GCGC	1 cut(s)	198
Hin1II	CATG	3 cut(s)	61, 278, 449
Hin6I	GCGC	1 cut(s)	196
HinP1I	GCGC	1 cut(s)	196
HinfI	GANTC	1 cut(s)	204
HpaII	CCGG	1 cut(s)	75
HphI	GGTGA	2 cut(s)	131, 244
Hpy166II	GTNNAC	1 cut(s)	151
Hpy188I	TCNGA	3 cut(s)	136, 187, 468
Hpy188III	TCNNGA	2 cut(s)	75, 453
Hpy8I	GTNNAC	1 cut(s)	151
HpyAV	CCTTC	1 cut(s)	37
HpyCH4III	ACNGT	1 cut(s)	111
HpyCH4V	TGCA	1 cut(s)	329
HpyF3I	CTNAG	2 cut(s)	240, 497
Hsp92II	CATG	3 cut(s)	61, 278, 449
HspAI	GCGC	1 cut(s)	196
Kpn2I	TCCGGA	1 cut(s)	74
KpnI	GGTACC	1 cut(s)	288
Ksp22I	TGATCA	1 cut(s)	463
Kzo9I	GATC	8 cut(s)	5, 62, 71, 189, 315, 335, 367, 463
LpnPI	CCDG	5 cut(s)	54, 88, 315, 444, 465
LweI	GCATC	1 cut(s)	409
MaeI	CTAG	1 cut(s)	221
MalI	GATC	8 cut(s)	7, 64, 73, 191, 317, 337, 369, 465
MboI	GATC	8 cut(s)	5, 62, 71, 189, 315, 335, 367, 463
MboII	GAAGA	4 cut(s)	245, 272, 377, 468
MflI	RGATCY	3 cut(s)	5, 71, 367
MluCI	AATT	6 cut(s)	130, 141, 297, 310, 375, 379
MnlI	CCTC	4 cut(s)	235, 238, 346, 469
MroI	TCCGGA	1 cut(s)	74
MseI	TTAA	4 cut(s)	114, 291, 303, 378
MspI	CCGG	1 cut(s)	75
NdeII	GATC	8 cut(s)	5, 62, 71, 189, 315, 335, 367, 463
NlaIII	CATG	3 cut(s)	61, 278, 449
NlaIV	GGNNCC	2 cut(s)	73, 286
PaqCI	CACCTGC	2 cut(s)	320, 470
PcsI	WCGNNNNNNNCGW	1 cut(s)	357
PfeI	GAWTC	1 cut(s)	204
PshBI	ATTAAT	1 cut(s)	378
PspN4I	GGNNCC	2 cut(s)	73, 286
PsuI	RGATCY	3 cut(s)	5, 71, 367
RsaI	GTAC	2 cut(s)	286, 347
RsaNI	GTAC	2 cut(s)	285, 346
SaqAI	TTAA	4 cut(s)	114, 291, 303, 378
Sau3AI	GATC	8 cut(s)	5, 62, 71, 189, 315, 335, 367, 463
SetI	ASST	8 cut(s)	19, 48, 160, 286, 334, 391, 484, 498
SfaNI	GCATC	1 cut(s)	409
SfcI	CTRYAG	2 cut(s)	93, 107
Sse9I	AATT	6 cut(s)	130, 141, 297, 310, 375, 379
SsiI	CCGC	3 cut(s)	20, 208, 307
SspMI	CTAG	1 cut(s)	221
StyI	CCWWGG	2 cut(s)	199, 280
TaaI	ACNGT	1 cut(s)	111
TaqI	TCGA	6 cut(s)	65, 192, 314, 351, 385, 417
TasI	AATT	6 cut(s)	130, 141, 297, 310, 375, 379
TfiI	GAWTC	1 cut(s)	204
Tru1I	TTAA	4 cut(s)	114, 291, 303, 378
Tru9I	TTAA	4 cut(s)	114, 291, 303, 378
TscAI	CASTG	2 cut(s)	244, 438
TspDTI	ATGAA	1 cut(s)	43
TspRI	CASTG	2 cut(s)	244, 438
VspI	ATTAAT	1 cut(s)	378
XapI	RAATTY	1 cut(s)	141
XmiI	GTMKAC	1 cut(s)	150
XspI	CTAG	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.