Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0004930

Physical Location & Seq

Genomic Coordinates Reverse (-)

15524380 .. 15526120

Gene Structure 1741 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00176060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGACCATGAACATGATGACAATGTGCAAACAAACACAGACGTTACCAAACGTCCCACTGTCCATTGGCGGCGGGCACAGCCACAACCTCCTCGATGTGTTGAATGTCCGCCGGCAGAAGGATAAAGTGGTGATCGTAATGGGAGCCACCGGGACGGGCAAGTCAAAGCTCTCCATCGACCTGGCCACCCGCTTCCCTGCCGAAATCATCAACTCCGACAAAATGCAACTCTACGAGGGCCTTGACATCGCCACCAACAAAATATCACCTCAAGAACAAAGCGGCGTCCCCCACCATTTGCTTGGAGTTTTAGACCCCAATGCGAATTTCTCTGCCGACGACTTCTGTGGCGTCACCTGCTTCACCGTCGAGTCGATCTTAAACCGCGACCGGCTTCCAATCATCGTTGGAGGCTCGAACTCGTACATAGAGGCGTTGATCGACGGTTACGATAAGATGTTCCGGTCAAGATATGACTGCTGCTTTCTCTGGGTGGATGTATCCTTACCCGTTTTGCATTCTTTTGTTTCCGACCGGGTCGATCAGATGGTGGAGAATGGAATGGTGGAGGAGGTGAGAGAGTTCTTTGATCCGAATGCGGATTATACAAAAGGGATCAGAAGGGCTATCGGTGTGCCGGAGTTTGATGACTTTTTCCGGTATGGTCCGTCTTTGGATGAGGAAACTAGAGCCGGGTTACTTGAACAAGCGATAAATGAAGTAAAAGACAATACATGCAAGTTGGCATGTAGGCAATTGGAGAAGATTCGAAGACTTAGGAATAAAGGGTGGAGTCTGCATCCACTTGATGCCACTGAGGTATTCCGGAAGCGTGGCAAGGAGGCTGATGAGGCCTGGGACAGGCTGGTTTCGGGGCCAAGCGCAGTGATTGTTCGCCAATTTCTTTACAATGTCAAGGCCGAAGTTCCCACAAATCTCACTGCCATCAGGGTTCCGGCCGCAATGGAAACTGCAGCTCTTGCGGCTGCAACTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009058 GO:0009308 GO:0009451 GO:0009536 GO:0009690 GO:0009691 GO:0009824 GO:0009987 GO:0010467 GO:0010817 GO:0016070 GO:0016740 GO:0016765 GO:0034470 GO:0034641 GO:0034660 GO:0034754 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0052381 GO:0052622 GO:0052623 GO:0065007 GO:0065008 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00908 ko01100 ko01110 map00908 map01100 map01110

Pfam Domains

Protein Families

IPPT

Protein Analysis

332

Amino Acids

37.1

Weight (kDa)

5.63

Isoelectric Point (pI)

36.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IPT	PF01745	42 - 184	4.1e-07	Isopentenyl transferase
IPPT	PF01715	76 - 152	2.6e-22	IPP transferase
IPPT	PF01715	156 - 257	9.7e-14	IPP transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004930)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63110
fragaria_vesca	FvH4_2g23840
malus_domestica	MD00G1084500.v1.1 MD03G1267900.v1.1 MD11G1288800.v1.1
prunus_persica	Prupe.5G047700_v2.0.a1 Prupe.8G243600_v2.0.a1
pyrus_communis	pycom06g03440
rosa_chinensis	RchiOBHm_Chr6g0291431 RchiOBHm_Chr6g0308751
rosa_laevigata	RLG00000010623 RLG00000010625 RLG00000012115
rosa_multiflora	Rmu_sc0003735.1_g000032
rosa_roxburghii	Rroxscaffold_7G00159980 Rroxscaffold_7G00176060
rosa_rugosa	Rorug06G0219300 Rorug06G0368000
rosa_samantha	Rh6AG331600 Rh6AG479000 Rh6AG479100 Rh6BG338500 Rh6BG488600 Rh6BG488700 Rh6CG344700 Rh6CG493900 Rh6DG331600 Rh6DG479500
rosa_wichuraiana	Rw6G028790 Rw6G041750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	365
AasI	GACNNNNNNGTC	1 cut(s)	160
Acc36I	ACCTGC	1 cut(s)	365
AccII	CGCG	1 cut(s)	387
AccIII	TCCGGA	1 cut(s)	825
AciI	CCGC	9 cut(s)	69, 72, 109, 190, 282, 385, 599, 960, 983
AclWI	GGATC	2 cut(s)	584, 623
AcoI	YGGCCR	2 cut(s)	183, 957
AcsI	RAATTY	1 cut(s)	325
AcyI	GRCGYC	2 cut(s)	285, 351
AfaI	GTAC	1 cut(s)	425
AfiI	CCNNNNNNNGG	2 cut(s)	118, 861
AgsI	TTSAA	2 cut(s)	103, 704
AjnI	CCWGG	2 cut(s)	180, 854
AjuI	GAANNNNNNNTTGG	2 cut(s)	311, 343
AluBI	AGCT	2 cut(s)	169, 977
AluI	AGCT	2 cut(s)	169, 977
AlwI	GGATC	2 cut(s)	584, 623
Aor13HI	TCCGGA	1 cut(s)	825
AoxI	GGCC	6 cut(s)	183, 238, 852, 875, 918, 957
ApeKI	GCWGC	3 cut(s)	480, 974, 986
ApoI	RAATTY	1 cut(s)	325
AspLEI	GCGC	1 cut(s)	884
AspS9I	GGNCC	3 cut(s)	238, 665, 875
AsuC2I	CCSGG	3 cut(s)	151, 536, 694
AsuHPI	GGTGA	5 cut(s)	142, 258, 346, 355, 586
AsuII	TTCGAA	1 cut(s)	769
AvaII	GGWCC	1 cut(s)	665
BaeGI	GKGCMC	1 cut(s)	78
BalI	TGGCCA	1 cut(s)	185
BbsI	GAAGAC	1 cut(s)	778
BbvI	GCAGC	3 cut(s)	467, 973, 986
BccI	CCATC	3 cut(s)	182, 541, 953
BciT130I	CCWGG	2 cut(s)	182, 856
BciVI	GTATCC	1 cut(s)	511
BcnI	CCSGG	3 cut(s)	151, 536, 694
BfaI	CTAG	2 cut(s)	687, 997
BfmI	CTRYAG	1 cut(s)	972
BfuAI	ACCTGC	1 cut(s)	365
BfuI	GTATCC	1 cut(s)	511
BisI	GCNGC	7 cut(s)	70, 283, 481, 960, 975, 984, 987
BlsI	GCNGC	7 cut(s)	71, 284, 482, 961, 976, 985, 988
Bme1390I	CCNGG	5 cut(s)	151, 182, 536, 694, 856
Bme18I	GGWCC	1 cut(s)	665
BmgT120I	GGNCC	3 cut(s)	238, 665, 875
BmiI	GGNNCC	3 cut(s)	145, 876, 954
BmrFI	CCNGG	5 cut(s)	151, 182, 536, 694, 856
BmsI	GCATC	2 cut(s)	799, 808
BpiI	GAAGAC	1 cut(s)	778
Bpu14I	TTCGAA	1 cut(s)	769
BpuEI	CTTGAG	1 cut(s)	255
BpuMI	CCSGG	3 cut(s)	151, 536, 694
BsaHI	GRCGYC	2 cut(s)	285, 351
BsaJI	CCNNGG	1 cut(s)	855
BsaWI	WCCGGW	3 cut(s)	462, 657, 825
Bsc4I	CCNNNNNNNGG	2 cut(s)	118, 861
Bse118I	RCCGGY	2 cut(s)	111, 390
Bse3DI	GCAATG	1 cut(s)	969
BseAI	TCCGGA	1 cut(s)	825
BseBI	CCWGG	2 cut(s)	182, 856
BseDI	CCNNGG	1 cut(s)	855
BseGI	GGATG	3 cut(s)	502, 682, 799
BseLI	CCNNNNNNNGG	2 cut(s)	118, 861
BseMI	GCAATG	1 cut(s)	969
BseMII	CTCAG	1 cut(s)	807
BseRI	GAGGAG	2 cut(s)	80, 584
BseSI	GKGCMC	1 cut(s)	78
BseX3I	CGGCCG	1 cut(s)	957
BseXI	GCAGC	3 cut(s)	467, 973, 986
Bsh1236I	CGCG	1 cut(s)	387
Bsh1285I	CGRYCG	3 cut(s)	391, 535, 960
BshFI	GGCC	6 cut(s)	185, 240, 854, 877, 920, 959
BsiEI	CGRYCG	3 cut(s)	391, 535, 960
BslFI	GGGAC	4 cut(s)	38, 166, 272, 872
BslI	CCNNNNNNNGG	2 cut(s)	118, 861
BsmFI	GGGAC	4 cut(s)	38, 166, 272, 872
BsmI	GAATGC	2 cut(s)	517, 601
BsnI	GGCC	6 cut(s)	185, 240, 854, 877, 920, 959
Bsp119I	TTCGAA	1 cut(s)	769
Bsp1286I	GDGCHC	1 cut(s)	78
Bsp13I	TCCGGA	1 cut(s)	825
Bsp143I	GATC	6 cut(s)	132, 375, 438, 541, 589, 615
BspACI	CCGC	9 cut(s)	69, 72, 109, 190, 282, 385, 599, 960, 983
BspANI	GGCC	6 cut(s)	185, 240, 854, 877, 920, 959
BspCNI	CTCAG	1 cut(s)	808
BspEI	TCCGGA	1 cut(s)	825
BspFNI	CGCG	1 cut(s)	387
BspLI	GGNNCC	3 cut(s)	145, 876, 954
BspMAI	CTGCAG	1 cut(s)	976
BspMI	ACCTGC	1 cut(s)	365
BspPI	GGATC	2 cut(s)	584, 623
BspT104I	TTCGAA	1 cut(s)	769
BsrDI	GCAATG	1 cut(s)	969
BsrFI	RCCGGY	2 cut(s)	111, 390
BssAI	RCCGGY	2 cut(s)	111, 390
BssECI	CCNNGG	1 cut(s)	855
BssMI	GATC	6 cut(s)	132, 375, 438, 541, 589, 615
BssNI	GRCGYC	2 cut(s)	285, 351
Bst2UI	CCWGG	2 cut(s)	182, 856
Bst4CI	ACNGT	3 cut(s)	60, 367, 446
BstACI	GRCGYC	2 cut(s)	285, 351
BstAPI	GCANNNNNTGC	1 cut(s)	980
BstBI	TTCGAA	1 cut(s)	769
BstC8I	GCNNGC	2 cut(s)	74, 113
BstDEI	CTNAG	2 cut(s)	776, 816
BstENI	CCTNNNNNAGG	1 cut(s)	859
BstF5I	GGATG	3 cut(s)	502, 682, 799
BstFNI	CGCG	1 cut(s)	387
BstHHI	GCGC	1 cut(s)	884
BstKTI	GATC	6 cut(s)	135, 378, 441, 544, 592, 618
BstMBI	GATC	6 cut(s)	132, 375, 438, 541, 589, 615
BstMCI	CGRYCG	3 cut(s)	391, 535, 960
BstMWI	GCNNNNNNNGC	5 cut(s)	78, 357, 851, 980, 983
BstNI	CCWGG	2 cut(s)	182, 856
BstNSI	RCATGY	2 cut(s)	738, 750
BstSCI	CCNGG	5 cut(s)	149, 180, 534, 692, 854
BstSFI	CTRYAG	1 cut(s)	972
BstSLI	GKGCMC	1 cut(s)	78
BstUI	CGCG	1 cut(s)	387
BstV1I	GCAGC	3 cut(s)	467, 973, 986
BstV2I	GAAGAC	1 cut(s)	778
BstXI	CCANNNNNNTGG	2 cut(s)	181, 302
BstZI	CGGCCG	1 cut(s)	957
BsuI	GTATCC	1 cut(s)	511
BsuRI	GGCC	6 cut(s)	185, 240, 854, 877, 920, 959
BtgZI	GCGATG	1 cut(s)	232
BtsCI	GGATG	3 cut(s)	502, 682, 799
BtsI	GCAGTG	2 cut(s)	891, 939
BtsIMutI	CAGTG	4 cut(s)	56, 813, 891, 939
BveI	ACCTGC	1 cut(s)	365
Cac8I	GCNNGC	2 cut(s)	74, 113
CfoI	GCGC	1 cut(s)	884
Cfr10I	RCCGGY	2 cut(s)	111, 390
Cfr13I	GGNCC	3 cut(s)	238, 665, 875
CseI	GACGC	2 cut(s)	274, 340
Csp6I	GTAC	1 cut(s)	424
CviAII	CATG	4 cut(s)	7, 13, 735, 747
CviQI	GTAC	1 cut(s)	424
DdeI	CTNAG	2 cut(s)	776, 816
DpnI	GATC	6 cut(s)	134, 377, 440, 543, 591, 617
DpnII	GATC	6 cut(s)	132, 375, 438, 541, 589, 615
DrdI	GACNNNNNNGTC	1 cut(s)	160
DseDI	GACNNNNNNGTC	1 cut(s)	160
EaeI	YGGCCR	2 cut(s)	183, 957
EagI	CGGCCG	1 cut(s)	957
EciI	GGCGGA	1 cut(s)	98
EclXI	CGGCCG	1 cut(s)	957
Eco147I	AGGCCT	1 cut(s)	854
Eco47I	GGWCC	1 cut(s)	665
Eco52I	CGGCCG	1 cut(s)	957
EcoNI	CCTNNNNNAGG	1 cut(s)	859
EcoO109I	RGGNCCY	1 cut(s)	238
EcoRII	CCWGG	2 cut(s)	180, 854
FaeI	CATG	4 cut(s)	10, 16, 738, 750
FaiI	YATR	8 cut(s)	8, 14, 428, 474, 606, 663, 736, 748
FaqI	GGGAC	4 cut(s)	38, 166, 272, 872
FatI	CATG	4 cut(s)	6, 12, 734, 746
FauI	CCCGC	2 cut(s)	65, 197
Fnu4HI	GCNGC	7 cut(s)	70, 283, 481, 960, 975, 984, 987
FokI	GGATG	3 cut(s)	509, 689, 786
Fsp4HI	GCNGC	7 cut(s)	70, 283, 481, 960, 975, 984, 987
FspBI	CTAG	2 cut(s)	687, 997
GlaI	GCGC	1 cut(s)	883
GluI	GCNGC	7 cut(s)	70, 283, 481, 960, 975, 984, 987
HaeIII	GGCC	6 cut(s)	185, 240, 854, 877, 920, 959
HgaI	GACGC	2 cut(s)	274, 340
HhaI	GCGC	1 cut(s)	884
Hin1I	GRCGYC	2 cut(s)	285, 351
Hin1II	CATG	4 cut(s)	10, 16, 738, 750
Hin6I	GCGC	1 cut(s)	882
HinP1I	GCGC	1 cut(s)	882
HinfI	GANTC	3 cut(s)	371, 766, 793
HphI	GGTGA	5 cut(s)	142, 258, 346, 355, 586
Hpy188I	TCNGA	5 cut(s)	217, 532, 546, 594, 620
Hpy188III	TCNNGA	3 cut(s)	272, 468, 826
Hpy99I	CGWCG	3 cut(s)	341, 371, 446
HpyAV	CCTTC	2 cut(s)	112, 615
HpyCH4III	ACNGT	3 cut(s)	60, 367, 446
HpyCH4IV	ACGT	2 cut(s)	41, 51
HpyCH4V	TGCA	7 cut(s)	27, 226, 517, 738, 799, 974, 989
HpyF10VI	GCNNNNNNNGC	5 cut(s)	78, 357, 851, 980, 983
HpyF3I	CTNAG	2 cut(s)	776, 816
HpySE526I	ACGT	2 cut(s)	41, 51
Hsp92I	GRCGYC	2 cut(s)	285, 351
Hsp92II	CATG	4 cut(s)	10, 16, 738, 750
HspAI	GCGC	1 cut(s)	882
Kpn2I	TCCGGA	1 cut(s)	825
KroI	GCCGGC	1 cut(s)	111
KroNI	GCCGGC	1 cut(s)	113
Kzo9I	GATC	6 cut(s)	132, 375, 438, 541, 589, 615
LmnI	GCTCC	1 cut(s)	143
Lsp1109I	GCAGC	3 cut(s)	467, 973, 986
LweI	GCATC	2 cut(s)	799, 808
MaeI	CTAG	2 cut(s)	687, 997
MaeII	ACGT	2 cut(s)	41, 51
MaeIII	GTNAC	4 cut(s)	42, 352, 446, 696
MalI	GATC	6 cut(s)	134, 377, 440, 543, 591, 617
MboI	GATC	6 cut(s)	132, 375, 438, 541, 589, 615
MboII	GAAGA	2 cut(s)	775, 783
MfeI	CAATTG	1 cut(s)	755
MhlI	GDGCHC	1 cut(s)	78
MlsI	TGGCCA	1 cut(s)	185
MluCI	AATT	3 cut(s)	325, 755, 899
MluNI	TGGCCA	1 cut(s)	185
MlyI	GAGTC	2 cut(s)	380, 802
MmeI	TCCRAC	3 cut(s)	240, 388, 555
Mox20I	TGGCCA	1 cut(s)	185
MroI	TCCGGA	1 cut(s)	825
MroNI	GCCGGC	1 cut(s)	111
MscI	TGGCCA	1 cut(s)	185
MseI	TTAA	1 cut(s)	380
MslI	CAYNNNNRTG	1 cut(s)	11
Msp20I	TGGCCA	1 cut(s)	185
MspR9I	CCNGG	5 cut(s)	151, 182, 536, 694, 856
MunI	CAATTG	1 cut(s)	755
Mva1269I	GAATGC	2 cut(s)	517, 601
MvaI	CCWGG	2 cut(s)	182, 856
MvnI	CGCG	1 cut(s)	387
MwoI	GCNNNNNNNGC	5 cut(s)	78, 357, 851, 980, 983
NaeI	GCCGGC	1 cut(s)	113
NciI	CCSGG	3 cut(s)	151, 536, 694
NdeII	GATC	6 cut(s)	132, 375, 438, 541, 589, 615
NgoMIV	GCCGGC	1 cut(s)	111
NlaIII	CATG	4 cut(s)	10, 16, 738, 750
NlaIV	GGNNCC	3 cut(s)	145, 876, 954
NmuCI	GTSAC	1 cut(s)	352
NspI	RCATGY	2 cut(s)	738, 750
NspV	TTCGAA	1 cut(s)	769
PaqCI	CACCTGC	1 cut(s)	365
PceI	AGGCCT	1 cut(s)	854
PcsI	WCGNNNNNNNCGW	1 cut(s)	447
PctI	GAATGC	2 cut(s)	517, 601
PdiI	GCCGGC	1 cut(s)	113
PfeI	GAWTC	1 cut(s)	766
PflFI	GACNNNGTC	1 cut(s)	536
PkrI	GCNGC	7 cut(s)	71, 284, 482, 961, 976, 985, 988
PleI	GAGTC	2 cut(s)	379, 801
PpsI	GAGTC	2 cut(s)	379, 801
Psp6I	CCWGG	2 cut(s)	180, 854
PspGI	CCWGG	2 cut(s)	180, 854
PspN4I	GGNNCC	3 cut(s)	145, 876, 954
PspPI	GGNCC	3 cut(s)	238, 665, 875
PstI	CTGCAG	1 cut(s)	976
PsyI	GACNNNGTC	1 cut(s)	536
RsaI	GTAC	1 cut(s)	425
RsaNI	GTAC	1 cut(s)	424
RseI	CAYNNNNRTG	1 cut(s)	11
SaqAI	TTAA	1 cut(s)	380
SatI	GCNGC	7 cut(s)	70, 283, 481, 960, 975, 984, 987
Sau3AI	GATC	6 cut(s)	132, 375, 438, 541, 589, 615
Sau96I	GGNCC	3 cut(s)	238, 665, 875
SchI	GAGTC	2 cut(s)	380, 802
ScrFI	CCNGG	5 cut(s)	151, 182, 536, 694, 856
SduI	GDGCHC	1 cut(s)	78
SfaNI	GCATC	2 cut(s)	799, 808
SfcI	CTRYAG	1 cut(s)	972
SfuI	TTCGAA	1 cut(s)	769
SinI	GGWCC	1 cut(s)	665
SmiMI	CAYNNNNRTG	1 cut(s)	11
SmlI	CTYRAG	1 cut(s)	270
SmoI	CTYRAG	1 cut(s)	270
Sse9I	AATT	3 cut(s)	325, 755, 899
SseBI	AGGCCT	1 cut(s)	854
SsiI	CCGC	9 cut(s)	69, 72, 109, 190, 282, 385, 599, 960, 983
SspMI	CTAG	2 cut(s)	687, 997
StuI	AGGCCT	1 cut(s)	854
StyD4I	CCNGG	5 cut(s)	149, 180, 534, 692, 854
TaaI	ACNGT	3 cut(s)	60, 367, 446
TaiI	ACGT	2 cut(s)	44, 54
TaqI	TCGA	8 cut(s)	93, 177, 369, 374, 416, 441, 540, 769
TasI	AATT	3 cut(s)	325, 755, 899
TauI	GCSGC	4 cut(s)	72, 285, 962, 986
TfiI	GAWTC	1 cut(s)	766
Tru1I	TTAA	1 cut(s)	380
Tru9I	TTAA	1 cut(s)	380
TscAI	CASTG	4 cut(s)	63, 820, 891, 946
TseFI	GTSAC	1 cut(s)	352
TseI	GCWGC	3 cut(s)	480, 974, 986
Tsp45I	GTSAC	1 cut(s)	352
TspDTI	ATGAA	2 cut(s)	23, 732
TspGWI	ACGGA	1 cut(s)	657
TspRI	CASTG	4 cut(s)	63, 820, 891, 946
Tth111I	GACNNNGTC	1 cut(s)	536
VpaK11BI	GGWCC	1 cut(s)	665
XagI	CCTNNNNNAGG	1 cut(s)	859
XapI	RAATTY	1 cut(s)	325
XceI	RCATGY	2 cut(s)	738, 750
XcmI	CCANNNNNNNNNTGG	1 cut(s)	299
XspI	CTAG	2 cut(s)	687, 997

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.