Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0004930

Physical Location & Seq

Genomic Coordinates Forward (+)

40838725 .. 40839651

Gene Structure 927 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1288800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGTTCCATTCTAGTGGCCATAATCATAGAATGGATGTGTTCAATCCCCGCCGGCAGAAGGAGAAGGTGGTGATCGTAATGGGGGCAACGGGGACCGGAAAATCAAGGCTCTCCATCGACCTAGCCACCTGTTTCCCGGCAGAAATCATAAACTCCGACAAAATGCAAGTCTACGAAGGCCTTGATATAGTCACCAACAAAATAACCAAAGAAGAGCAACGTGGTGTACCGCACCATTTGCTAGGGATACTAGATCCTAATGAAGATTTTACAGCCAGGGATTTTTGTGACCTAACCTCACTTGCCATTGAATCTGTTTTAGGCCGTGATCGGCTTCCAATCATCGTCGGAGGCTCCAACTCCTACATCGAGGCGTTAGTCGATGACCATGACTATAAATTTCGGTCTAAGTACGAATGTTGCTTTTTATGGGTGGATGTTTCTGTACCCGTTATGCACTCGTTTGTGTCAGGACGGGTTGACCACATGGTTCAAAATGGAATGGTGGATGAGGCGAGAGAGTTCTTTGATCCCAATGCAGATTACATGAAAGGGATTCGAAGGGCAATTGGGGTCCCTGAATTCGATAAGTACTTCAGGTATGGGCCACTTTTGGATGAAGAAACTCGTGCCAGGTTACTACAACAAGCAGTGGACAAAATTAAGGACAATACGTGCAAATTGGCATGCCGACAATTGGAGAAGATTCATGGACTTAGAAATAACAAAGGGTGGAATCTGCACCCGTTGGATGCCACCGAGGTGTTCCGAAAGCGCGGCAAGGACGCTGACGAGGCCTGGGAAAAGCTTGTGTCGGGGCCAGGTGCTATGATCGTTGGCCAGTTTCTTTACAATATGACAGCTGAGGTTCCTCCACATATTGGAAGTCTTAGGGTTCCTGCAGCACTTGCAGCTGCAACTCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009058 GO:0009308 GO:0009451 GO:0009536 GO:0009690 GO:0009691 GO:0009824 GO:0009987 GO:0010467 GO:0010817 GO:0016070 GO:0016740 GO:0016765 GO:0034470 GO:0034641 GO:0034660 GO:0034754 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0052381 GO:0052622 GO:0052623 GO:0065007 GO:0065008 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00908 ko01100 ko01110 map00908 map01100 map01110

Pfam Domains

Protein Families

IPPT

Protein Analysis

309

Amino Acids

34.76

Weight (kDa)

6.31

Isoelectric Point (pI)

36.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IPT	PF01745	22 - 138	2.8e-06	Isopentenyl transferase
IPPT	PF01715	56 - 130	5.1e-24	IPP transferase
IPPT	PF01715	135 - 233	4.3e-12	IPP transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004930)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63110
fragaria_vesca	FvH4_2g23840
malus_domestica	MD00G1084500.v1.1 MD03G1267900.v1.1 MD11G1288800.v1.1
prunus_persica	Prupe.5G047700_v2.0.a1 Prupe.8G243600_v2.0.a1
pyrus_communis	pycom06g03440
rosa_chinensis	RchiOBHm_Chr6g0291431 RchiOBHm_Chr6g0308751
rosa_laevigata	RLG00000010623 RLG00000010625 RLG00000012115
rosa_multiflora	Rmu_sc0003735.1_g000032
rosa_roxburghii	Rroxscaffold_7G00159980 Rroxscaffold_7G00176060
rosa_rugosa	Rorug06G0219300 Rorug06G0368000
rosa_samantha	Rh6AG331600 Rh6AG479000 Rh6AG479100 Rh6BG338500 Rh6BG488600 Rh6BG488700 Rh6CG344700 Rh6CG493900 Rh6DG331600 Rh6DG479500
rosa_wichuraiana	Rw6G028790 Rw6G041750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	881
AccI	GTMKAC	1 cut(s)	171
AccII	CGCG	1 cut(s)	777
AciI	CCGC	3 cut(s)	49, 230, 777
AclWI	GGATC	2 cut(s)	248, 524
AcoI	YGGCCR	2 cut(s)	16, 838
AcsI	RAATTY	2 cut(s)	398, 581
AcuI	CTGAAG	1 cut(s)	580
AfaI	GTAC	4 cut(s)	228, 413, 447, 593
AfiI	CCNNNNNNNGG	3 cut(s)	58, 697, 881
AgsI	TTSAA	3 cut(s)	43, 311, 494
AjnI	CCWGG	4 cut(s)	275, 632, 797, 820
AleI	CACNNNNGTG	1 cut(s)	761
AluBI	AGCT	3 cut(s)	808, 863, 914
AluI	AGCT	3 cut(s)	808, 863, 914
AlwI	GGATC	2 cut(s)	248, 524
AoxI	GGCC	7 cut(s)	16, 178, 322, 605, 795, 818, 838
ApeKI	GCWGC	3 cut(s)	902, 911, 914
ApoI	RAATTY	2 cut(s)	398, 581
ArsI	GACNNNNNNTTYG	2 cut(s)	153, 185
AspLEI	GCGC	1 cut(s)	777
AspS9I	GGNCC	4 cut(s)	93, 574, 605, 818
AsuC2I	CCSGG	1 cut(s)	137
AsuHPI	GGTGA	2 cut(s)	82, 184
AsuII	TTCGAA	1 cut(s)	559
AvaII	GGWCC	2 cut(s)	93, 574
BalI	TGGCCA	2 cut(s)	18, 840
BauI	CACGAG	1 cut(s)	627
BbvCI	CCTCAGC	1 cut(s)	864
BbvI	GCAGC	3 cut(s)	901, 914, 923
BccI	CCATC	1 cut(s)	122
BceAI	ACGGC	1 cut(s)	309
BciT130I	CCWGG	4 cut(s)	277, 634, 799, 822
BciVI	GTATCC	1 cut(s)	240
BcnI	CCSGG	1 cut(s)	137
BfaI	CTAG	5 cut(s)	12, 122, 242, 251, 925
BfmI	CTRYAG	1 cut(s)	900
BfuI	GTATCC	1 cut(s)	240
BisI	GCNGC	4 cut(s)	778, 903, 912, 915
BlsI	GCNGC	4 cut(s)	779, 904, 913, 916
BmcAI	AGTACT	1 cut(s)	593
Bme1390I	CCNGG	5 cut(s)	137, 277, 634, 799, 822
Bme18I	GGWCC	2 cut(s)	93, 574
BmgT120I	GGNCC	4 cut(s)	93, 574, 605, 818
BmiI	GGNNCC	7 cut(s)	94, 355, 575, 576, 819, 870, 897
BmrFI	CCNGG	5 cut(s)	137, 277, 634, 799, 822
BmsI	GCATC	1 cut(s)	742
Bpu10I	CCTNAGC	1 cut(s)	864
Bpu14I	TTCGAA	1 cut(s)	559
BpuMI	CCSGG	1 cut(s)	137
BsaAI	YACGTR	1 cut(s)	675
BsaJI	CCNNGG	3 cut(s)	276, 759, 798
BsaWI	WCCGGW	1 cut(s)	95
Bsc4I	CCNNNNNNNGG	3 cut(s)	58, 697, 881
Bse118I	RCCGGY	1 cut(s)	51
Bse1I	ACTGG	1 cut(s)	841
BseBI	CCWGG	4 cut(s)	277, 634, 799, 822
BseDI	CCNNGG	3 cut(s)	276, 759, 798
BseGI	GGATG	5 cut(s)	40, 442, 514, 622, 757
BseLI	CCNNNNNNNGG	3 cut(s)	58, 697, 881
BseMII	CTCAG	1 cut(s)	855
BseNI	ACTGG	1 cut(s)	841
BseXI	GCAGC	3 cut(s)	901, 914, 923
BsgI	GTGCAG	1 cut(s)	725
Bsh1236I	CGCG	1 cut(s)	777
BshFI	GGCC	7 cut(s)	18, 180, 324, 607, 797, 820, 840
BsiSI	CCGG	3 cut(s)	52, 96, 137
BslFI	GGGAC	2 cut(s)	106, 560
BslI	CCNNNNNNNGG	3 cut(s)	58, 697, 881
BsmFI	GGGAC	2 cut(s)	106, 560
BsnI	GGCC	7 cut(s)	18, 180, 324, 607, 797, 820, 840
Bsp119I	TTCGAA	1 cut(s)	559
Bsp143I	GATC	5 cut(s)	72, 253, 328, 529, 831
BspACI	CCGC	3 cut(s)	49, 230, 777
BspANI	GGCC	7 cut(s)	18, 180, 324, 607, 797, 820, 840
BspCNI	CTCAG	1 cut(s)	856
BspFNI	CGCG	1 cut(s)	777
BspLI	GGNNCC	7 cut(s)	94, 355, 575, 576, 819, 870, 897
BspMAI	CTGCAG	1 cut(s)	904
BspPI	GGATC	2 cut(s)	248, 524
BspQI	GCTCTTC	1 cut(s)	207
BspT104I	TTCGAA	1 cut(s)	559
BsrFI	RCCGGY	1 cut(s)	51
BsrI	ACTGG	1 cut(s)	841
BssAI	RCCGGY	1 cut(s)	51
BssECI	CCNNGG	3 cut(s)	276, 759, 798
BssMI	GATC	5 cut(s)	72, 253, 328, 529, 831
BssSI	CACGAG	1 cut(s)	627
Bst2BI	CACGAG	1 cut(s)	627
Bst2UI	CCWGG	4 cut(s)	277, 634, 799, 822
Bst6I	CTCTTC	1 cut(s)	207
BstAPI	GCANNNNNTGC	2 cut(s)	238, 908
BstBAI	YACGTR	1 cut(s)	675
BstBI	TTCGAA	1 cut(s)	559
BstC8I	GCNNGC	2 cut(s)	53, 688
BstDEI	CTNAG	4 cut(s)	408, 716, 864, 890
BstF5I	GGATG	5 cut(s)	40, 442, 514, 622, 757
BstFNI	CGCG	1 cut(s)	777
BstHHI	GCGC	1 cut(s)	777
BstKTI	GATC	5 cut(s)	75, 256, 331, 532, 834
BstMBI	GATC	5 cut(s)	72, 253, 328, 529, 831
BstMWI	GCNNNNNNNGC	4 cut(s)	238, 794, 908, 911
BstNI	CCWGG	4 cut(s)	277, 634, 799, 822
BstNSI	RCATGY	1 cut(s)	690
BstSCI	CCNGG	5 cut(s)	135, 275, 632, 797, 820
BstSFI	CTRYAG	1 cut(s)	900
BstUI	CGCG	1 cut(s)	777
BstV1I	GCAGC	3 cut(s)	901, 914, 923
BstX2I	RGATCY	1 cut(s)	253
BstXI	CCANNNNNNTGG	1 cut(s)	14
BstYI	RGATCY	1 cut(s)	253
BsuI	GTATCC	1 cut(s)	240
BsuRI	GGCC	7 cut(s)	18, 180, 324, 607, 797, 820, 840
BtsCI	GGATG	5 cut(s)	40, 442, 514, 622, 757
BtsI	GCAGTG	1 cut(s)	657
BtsIMutI	CAGTG	1 cut(s)	657
Cac8I	GCNNGC	2 cut(s)	53, 688
CfoI	GCGC	1 cut(s)	777
Cfr10I	RCCGGY	1 cut(s)	51
Cfr13I	GGNCC	4 cut(s)	93, 574, 605, 818
CseI	GACGC	1 cut(s)	794
Csp6I	GTAC	4 cut(s)	227, 412, 446, 592
CviAII	CATG	5 cut(s)	389, 487, 547, 687, 710
CviQI	GTAC	4 cut(s)	227, 412, 446, 592
DdeI	CTNAG	4 cut(s)	408, 716, 864, 890
DpnI	GATC	5 cut(s)	74, 255, 330, 531, 833
DpnII	GATC	5 cut(s)	72, 253, 328, 529, 831
EaeI	YGGCCR	2 cut(s)	16, 838
Eam1104I	CTCTTC	1 cut(s)	207
EarI	CTCTTC	1 cut(s)	207
Eco147I	AGGCCT	2 cut(s)	180, 797
Eco47I	GGWCC	2 cut(s)	93, 574
Eco57I	CTGAAG	1 cut(s)	580
EcoO109I	RGGNCCY	1 cut(s)	574
EcoRI	GAATTC	1 cut(s)	581
EcoRII	CCWGG	4 cut(s)	275, 632, 797, 820
FaeI	CATG	5 cut(s)	392, 490, 550, 690, 713
FaqI	GGGAC	2 cut(s)	106, 560
FatI	CATG	5 cut(s)	388, 486, 546, 686, 709
FauI	CCCGC	1 cut(s)	56
FblI	GTMKAC	1 cut(s)	171
Fnu4HI	GCNGC	4 cut(s)	778, 903, 912, 915
FokI	GGATG	5 cut(s)	47, 449, 521, 629, 764
Fsp4HI	GCNGC	4 cut(s)	778, 903, 912, 915
FspBI	CTAG	5 cut(s)	12, 122, 242, 251, 925
GlaI	GCGC	1 cut(s)	776
GluI	GCNGC	4 cut(s)	778, 903, 912, 915
HaeIII	GGCC	7 cut(s)	18, 180, 324, 607, 797, 820, 840
HapII	CCGG	3 cut(s)	52, 96, 137
HgaI	GACGC	1 cut(s)	794
HhaI	GCGC	1 cut(s)	777
Hin1II	CATG	5 cut(s)	392, 490, 550, 690, 713
Hin6I	GCGC	1 cut(s)	775
HinP1I	GCGC	1 cut(s)	775
HincII	GTYRAC	1 cut(s)	481
HindII	GTYRAC	1 cut(s)	481
HindIII	AAGCTT	1 cut(s)	806
HinfI	GANTC	4 cut(s)	311, 556, 706, 736
HpaII	CCGG	3 cut(s)	52, 96, 137
HphI	GGTGA	2 cut(s)	82, 184
Hpy166II	GTNNAC	4 cut(s)	172, 227, 481, 655
Hpy188I	TCNGA	3 cut(s)	157, 350, 770
Hpy188III	TCNNGA	1 cut(s)	471
Hpy8I	GTNNAC	4 cut(s)	172, 227, 481, 655
Hpy99I	CGWCG	1 cut(s)	350
HpyAV	CCTTC	4 cut(s)	52, 58, 170, 555
HpyCH4IV	ACGT	2 cut(s)	220, 674
HpyCH4V	TGCA	8 cut(s)	166, 457, 539, 678, 742, 902, 911, 917
HpyF10VI	GCNNNNNNNGC	4 cut(s)	238, 794, 908, 911
HpyF3I	CTNAG	4 cut(s)	408, 716, 864, 890
HpySE526I	ACGT	2 cut(s)	220, 674
Hsp92II	CATG	5 cut(s)	392, 490, 550, 690, 713
HspAI	GCGC	1 cut(s)	775
KflI	GGGWCCC	1 cut(s)	574
KroI	GCCGGC	1 cut(s)	51
KroNI	GCCGGC	1 cut(s)	53
Kzo9I	GATC	5 cut(s)	72, 253, 328, 529, 831
LguI	GCTCTTC	1 cut(s)	207
LmnI	GCTCC	1 cut(s)	359
Lsp1109I	GCAGC	3 cut(s)	901, 914, 923
LweI	GCATC	1 cut(s)	742
MaeI	CTAG	5 cut(s)	12, 122, 242, 251, 925
MaeII	ACGT	2 cut(s)	220, 674
MaeIII	GTNAC	3 cut(s)	190, 287, 636
MalI	GATC	5 cut(s)	74, 255, 330, 531, 833
MboI	GATC	5 cut(s)	72, 253, 328, 529, 831
MboII	GAAGA	4 cut(s)	224, 275, 632, 715
MfeI	CAATTG	2 cut(s)	567, 695
MflI	RGATCY	1 cut(s)	253
MlsI	TGGCCA	2 cut(s)	18, 840
MluCI	AATT	6 cut(s)	398, 567, 581, 660, 680, 695
MluNI	TGGCCA	2 cut(s)	18, 840
MmeI	TCCRAC	4 cut(s)	180, 328, 381, 729
MnlI	CCTC	8 cut(s)	307, 344, 364, 505, 754, 787, 859, 882
Mox20I	TGGCCA	2 cut(s)	18, 840
MroNI	GCCGGC	1 cut(s)	51
MscI	TGGCCA	2 cut(s)	18, 840
MseI	TTAA	1 cut(s)	663
MslI	CAYNNNNRTG	2 cut(s)	12, 761
Msp20I	TGGCCA	2 cut(s)	18, 840
MspA1I	CMGCKG	2 cut(s)	863, 914
MspI	CCGG	3 cut(s)	52, 96, 137
MspR9I	CCNGG	5 cut(s)	137, 277, 634, 799, 822
MunI	CAATTG	2 cut(s)	567, 695
MvaI	CCWGG	4 cut(s)	277, 634, 799, 822
MvnI	CGCG	1 cut(s)	777
MwoI	GCNNNNNNNGC	4 cut(s)	238, 794, 908, 911
NaeI	GCCGGC	1 cut(s)	53
NciI	CCSGG	1 cut(s)	137
NdeII	GATC	5 cut(s)	72, 253, 328, 529, 831
NgoMIV	GCCGGC	1 cut(s)	51
NlaIII	CATG	5 cut(s)	392, 490, 550, 690, 713
NlaIV	GGNNCC	7 cut(s)	94, 355, 575, 576, 819, 870, 897
NmuCI	GTSAC	2 cut(s)	190, 287
NspI	RCATGY	1 cut(s)	690
NspV	TTCGAA	1 cut(s)	559
OliI	CACNNNNGTG	1 cut(s)	761
PaeI	GCATGC	1 cut(s)	690
PceI	AGGCCT	2 cut(s)	180, 797
PciSI	GCTCTTC	1 cut(s)	207
PdiI	GCCGGC	1 cut(s)	53
PfeI	GAWTC	4 cut(s)	311, 556, 706, 736
PflMI	CCANNNNNTGG	1 cut(s)	881
PkrI	GCNGC	4 cut(s)	779, 904, 913, 916
Ppu21I	YACGTR	1 cut(s)	675
PpuMI	RGGWCCY	1 cut(s)	574
Psp5II	RGGWCCY	1 cut(s)	574
Psp6I	CCWGG	4 cut(s)	275, 632, 797, 820
PspGI	CCWGG	4 cut(s)	275, 632, 797, 820
PspN4I	GGNNCC	7 cut(s)	94, 355, 575, 576, 819, 870, 897
PspPI	GGNCC	4 cut(s)	93, 574, 605, 818
PspPPI	RGGWCCY	1 cut(s)	574
PstI	CTGCAG	1 cut(s)	904
PsuI	RGATCY	1 cut(s)	253
PvuII	CAGCTG	2 cut(s)	863, 914
RsaI	GTAC	4 cut(s)	228, 413, 447, 593
RsaNI	GTAC	4 cut(s)	227, 412, 446, 592
RseI	CAYNNNNRTG	2 cut(s)	12, 761
SapI	GCTCTTC	1 cut(s)	207
SaqAI	TTAA	1 cut(s)	663
SatI	GCNGC	4 cut(s)	778, 903, 912, 915
Sau3AI	GATC	5 cut(s)	72, 253, 328, 529, 831
Sau96I	GGNCC	4 cut(s)	93, 574, 605, 818
ScaI	AGTACT	1 cut(s)	593
ScrFI	CCNGG	5 cut(s)	137, 277, 634, 799, 822
SfaNI	GCATC	1 cut(s)	742
SfcI	CTRYAG	1 cut(s)	900
SfuI	TTCGAA	1 cut(s)	559
SinI	GGWCC	2 cut(s)	93, 574
SmiMI	CAYNNNNRTG	2 cut(s)	12, 761
SphI	GCATGC	1 cut(s)	690
Sse9I	AATT	6 cut(s)	398, 567, 581, 660, 680, 695
SseBI	AGGCCT	2 cut(s)	180, 797
SsiI	CCGC	3 cut(s)	49, 230, 777
SspMI	CTAG	5 cut(s)	12, 122, 242, 251, 925
StuI	AGGCCT	2 cut(s)	180, 797
StyD4I	CCNGG	5 cut(s)	135, 275, 632, 797, 820
TaiI	ACGT	2 cut(s)	223, 677
TaqI	TCGA	5 cut(s)	117, 369, 381, 559, 585
TaqII	GACCGA	1 cut(s)	393
TasI	AATT	6 cut(s)	398, 567, 581, 660, 680, 695
TatI	WGTACW	1 cut(s)	591
TauI	GCSGC	1 cut(s)	780
TfiI	GAWTC	4 cut(s)	311, 556, 706, 736
Tru1I	TTAA	1 cut(s)	663
Tru9I	TTAA	1 cut(s)	663
TscAI	CASTG	1 cut(s)	657
TseFI	GTSAC	2 cut(s)	190, 287
TseI	GCWGC	3 cut(s)	902, 911, 914
Tsp45I	GTSAC	2 cut(s)	190, 287
TspDTI	ATGAA	4 cut(s)	276, 563, 633, 698
TspRI	CASTG	1 cut(s)	657
Van91I	CCANNNNNTGG	1 cut(s)	881
VpaK11BI	GGWCC	2 cut(s)	93, 574
XapI	RAATTY	2 cut(s)	398, 581
XceI	RCATGY	1 cut(s)	690
XmiI	GTMKAC	1 cut(s)	171
XspI	CTAG	5 cut(s)	12, 122, 242, 251, 925
ZrmI	AGTACT	1 cut(s)	593

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.