Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0004930

Physical Location & Seq

Genomic Coordinates Forward (+)

3059142 .. 3060069

Gene Structure 928 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010623

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGGATCTACCAAAGGTGCGGAACTCCCCACGAACAAGGAGAAGGACATTTTCATCATGGGATCGACTGGATCCGGAAAAACCAAACTCTCTGTAGATTTAGCCCTACAGTTTAAGGGTGAAATCATCAATTCTGACAAAATTCAAGTCTACAAAGGTGGCGATATTATTACTAATAAAGTCTCGGAGATCGAGCGCCGAGGAATCCGCCACCATTTGCTAGGGTTTATTGAAGACACTGAGGAGGACTTCACCATAGAAGATTTTTTCCACCGGAGGAGGCTGGAATGCGCTGGCTGTCCGCTGAGCACAACAGCTTTCCCCCCAGCCGGGTTCAACTCATCCGATGCTTCGATCTATGTAACCATGAAGCAAGGGGTTATGAGGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009058 GO:0009308 GO:0009451 GO:0009536 GO:0009690 GO:0009691 GO:0009824 GO:0009987 GO:0010467 GO:0010817 GO:0016070 GO:0016740 GO:0016765 GO:0034470 GO:0034641 GO:0034660 GO:0034754 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0052381 GO:0052622 GO:0052623 GO:0065007 GO:0065008 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00908 ko01100 ko01110 map00908 map01100 map01110

Pfam Domains

Protein Families

IPPT

Protein Analysis

131

Amino Acids

14.4

Weight (kDa)

6.29

Isoelectric Point (pI)

51.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IPPT	PF01715	49 - 92	1.4e-08	IPP transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004930)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63110
fragaria_vesca	FvH4_2g23840
malus_domestica	MD00G1084500.v1.1 MD03G1267900.v1.1 MD11G1288800.v1.1
prunus_persica	Prupe.5G047700_v2.0.a1 Prupe.8G243600_v2.0.a1
pyrus_communis	pycom06g03440
rosa_chinensis	RchiOBHm_Chr6g0291431 RchiOBHm_Chr6g0308751
rosa_laevigata	RLG00000010623 RLG00000010625 RLG00000012115
rosa_multiflora	Rmu_sc0003735.1_g000032
rosa_roxburghii	Rroxscaffold_7G00159980 Rroxscaffold_7G00176060
rosa_rugosa	Rorug06G0219300 Rorug06G0368000
rosa_samantha	Rh6AG331600 Rh6AG479000 Rh6AG479100 Rh6BG338500 Rh6BG488600 Rh6BG488700 Rh6CG344700 Rh6CG493900 Rh6DG331600 Rh6DG479500
rosa_wichuraiana	Rw6G028790 Rw6G041750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	150
AccIII	TCCGGA	1 cut(s)	74
AciI	CCGC	3 cut(s)	20, 208, 302
AclWI	GGATC	4 cut(s)	13, 66, 70, 79
AcsI	RAATTY	1 cut(s)	141
AfiI	CCNNNNNNNGG	2 cut(s)	329, 330
AgsI	TTSAA	3 cut(s)	146, 233, 337
AluBI	AGCT	1 cut(s)	317
AluI	AGCT	1 cut(s)	317
Alw21I	GWGCWC	1 cut(s)	311
Alw26I	GTCTC	1 cut(s)	187
AlwI	GGATC	4 cut(s)	13, 66, 70, 79
Aor13HI	TCCGGA	1 cut(s)	74
ApoI	RAATTY	1 cut(s)	141
ArsI	GACNNNNNNTTYG	2 cut(s)	132, 164
AspLEI	GCGC	2 cut(s)	198, 293
AsuC2I	CCSGG	1 cut(s)	331
AsuHPI	GGTGA	2 cut(s)	131, 244
BamHI	GGATCC	1 cut(s)	71
BbsI	GAAGAC	1 cut(s)	240
Bbv12I	GWGCWC	1 cut(s)	311
BcnI	CCSGG	1 cut(s)	331
BcoDI	GTCTC	1 cut(s)	187
BfaI	CTAG	1 cut(s)	221
BfmI	CTRYAG	2 cut(s)	93, 107
BfoI	RGCGCY	1 cut(s)	199
BlpI	GCTNAGC	1 cut(s)	305
Bme1390I	CCNGG	1 cut(s)	331
BmiI	GGNNCC	1 cut(s)	73
BmrFI	CCNGG	1 cut(s)	331
BmsI	GCATC	1 cut(s)	337
BpiI	GAAGAC	1 cut(s)	240
Bpu1102I	GCTNAGC	1 cut(s)	305
BpuMI	CCSGG	1 cut(s)	331
BsaJI	CCNNGG	1 cut(s)	199
BsaWI	WCCGGW	2 cut(s)	74, 273
Bsc4I	CCNNNNNNNGG	2 cut(s)	329, 330
Bse1I	ACTGG	1 cut(s)	73
BseAI	TCCGGA	1 cut(s)	74
BseDI	CCNNGG	1 cut(s)	199
BseGI	GGATG	1 cut(s)	341
BseLI	CCNNNNNNNGG	2 cut(s)	329, 330
BseMII	CTCAG	2 cut(s)	231, 296
BseNI	ACTGG	1 cut(s)	73
BseRI	GAGGAG	2 cut(s)	257, 292
BseYI	CCCAGC	1 cut(s)	325
BsiHKAI	GWGCWC	1 cut(s)	311
BsiSI	CCGG	3 cut(s)	75, 274, 330
BslI	CCNNNNNNNGG	2 cut(s)	329, 330
BsmAI	GTCTC	1 cut(s)	187
BsmI	GAATGC	1 cut(s)	293
Bsp1286I	GDGCHC	1 cut(s)	311
Bsp13I	TCCGGA	1 cut(s)	74
Bsp143I	GATC	5 cut(s)	5, 62, 71, 189, 354
Bsp1720I	GCTNAGC	1 cut(s)	305
BspACI	CCGC	3 cut(s)	20, 208, 302
BspCNI	CTCAG	2 cut(s)	232, 297
BspEI	TCCGGA	1 cut(s)	74
BspLI	GGNNCC	1 cut(s)	73
BspPI	GGATC	4 cut(s)	13, 66, 70, 79
BsrI	ACTGG	1 cut(s)	73
BssECI	CCNNGG	1 cut(s)	199
BssMI	GATC	5 cut(s)	5, 62, 71, 189, 354
Bst4CI	ACNGT	1 cut(s)	111
BstC8I	GCNNGC	1 cut(s)	295
BstDEI	CTNAG	2 cut(s)	240, 305
BstF5I	GGATG	1 cut(s)	341
BstH2I	RGCGCY	1 cut(s)	199
BstHHI	GCGC	2 cut(s)	198, 293
BstKTI	GATC	5 cut(s)	8, 65, 74, 192, 357
BstMAI	GTCTC	1 cut(s)	187
BstMBI	GATC	5 cut(s)	5, 62, 71, 189, 354
BstSCI	CCNGG	1 cut(s)	329
BstSFI	CTRYAG	2 cut(s)	93, 107
BstV2I	GAAGAC	1 cut(s)	240
BstX2I	RGATCY	2 cut(s)	5, 71
BstYI	RGATCY	2 cut(s)	5, 71
BtsCI	GGATG	1 cut(s)	341
BtsIMutI	CAGTG	1 cut(s)	237
Cac8I	GCNNGC	1 cut(s)	295
CfoI	GCGC	2 cut(s)	198, 293
CviAII	CATG	2 cut(s)	58, 367
CviJI	RGCY	5 cut(s)	104, 283, 297, 317, 329
CviKI_1	RGCY	5 cut(s)	104, 283, 297, 317, 329
DdeI	CTNAG	2 cut(s)	240, 305
DpnI	GATC	5 cut(s)	7, 64, 73, 191, 356
DpnII	GATC	5 cut(s)	5, 62, 71, 189, 354
EciI	GGCGGA	1 cut(s)	197
FaeI	CATG	2 cut(s)	61, 370
FaiI	YATR	5 cut(s)	59, 257, 360, 368, 383
FatI	CATG	2 cut(s)	57, 366
FblI	GTMKAC	1 cut(s)	150
FokI	GGATG	1 cut(s)	328
FspBI	CTAG	1 cut(s)	221
GlaI	GCGC	2 cut(s)	197, 292
GsaI	CCCAGC	1 cut(s)	329
HaeII	RGCGCY	1 cut(s)	199
HapII	CCGG	3 cut(s)	75, 274, 330
HhaI	GCGC	2 cut(s)	198, 293
Hin1II	CATG	2 cut(s)	61, 370
Hin6I	GCGC	2 cut(s)	196, 291
HinP1I	GCGC	2 cut(s)	196, 291
HinfI	GANTC	1 cut(s)	204
HpaII	CCGG	3 cut(s)	75, 274, 330
HphI	GGTGA	2 cut(s)	131, 244
Hpy166II	GTNNAC	1 cut(s)	151
Hpy188I	TCNGA	3 cut(s)	136, 187, 346
Hpy188III	TCNNGA	1 cut(s)	75
Hpy8I	GTNNAC	1 cut(s)	151
HpyAV	CCTTC	1 cut(s)	37
HpyCH4III	ACNGT	1 cut(s)	111
HpyF3I	CTNAG	2 cut(s)	240, 305
Hsp92II	CATG	2 cut(s)	61, 370
HspAI	GCGC	2 cut(s)	196, 291
Kpn2I	TCCGGA	1 cut(s)	74
Kzo9I	GATC	5 cut(s)	5, 62, 71, 189, 354
LpnPI	CCDG	7 cut(s)	54, 88, 269, 279, 287, 339, 343
LweI	GCATC	1 cut(s)	337
MaeI	CTAG	1 cut(s)	221
MaeIII	GTNAC	1 cut(s)	361
MalI	GATC	5 cut(s)	7, 64, 73, 191, 356
MboI	GATC	5 cut(s)	5, 62, 71, 189, 354
MboII	GAAGA	2 cut(s)	245, 272
MflI	RGATCY	2 cut(s)	5, 71
MhlI	GDGCHC	1 cut(s)	311
MluCI	AATT	2 cut(s)	130, 141
MnlI	CCTC	6 cut(s)	194, 235, 238, 270, 273, 378
MroI	TCCGGA	1 cut(s)	74
MseI	TTAA	1 cut(s)	114
MspA1I	CMGCKG	1 cut(s)	304
MspI	CCGG	3 cut(s)	75, 274, 330
MspR9I	CCNGG	1 cut(s)	331
Mva1269I	GAATGC	1 cut(s)	293
NciI	CCSGG	1 cut(s)	331
NdeII	GATC	5 cut(s)	5, 62, 71, 189, 354
NlaIII	CATG	2 cut(s)	61, 370
NlaIV	GGNNCC	1 cut(s)	73
NmeAIII	GCCGAG	1 cut(s)	224
PctI	GAATGC	1 cut(s)	293
PfeI	GAWTC	1 cut(s)	204
PspFI	CCCAGC	1 cut(s)	325
PspN4I	GGNNCC	1 cut(s)	73
PsuI	RGATCY	2 cut(s)	5, 71
SaqAI	TTAA	1 cut(s)	114
Sau3AI	GATC	5 cut(s)	5, 62, 71, 189, 354
ScrFI	CCNGG	1 cut(s)	331
SduI	GDGCHC	1 cut(s)	311
SetI	ASST	3 cut(s)	19, 160, 319
SfaNI	GCATC	1 cut(s)	337
SfcI	CTRYAG	2 cut(s)	93, 107
Sse9I	AATT	2 cut(s)	130, 141
SsiI	CCGC	3 cut(s)	20, 208, 302
SspMI	CTAG	1 cut(s)	221
StyD4I	CCNGG	1 cut(s)	329
TaaI	ACNGT	1 cut(s)	111
TaqI	TCGA	3 cut(s)	65, 192, 353
TasI	AATT	2 cut(s)	130, 141
TfiI	GAWTC	1 cut(s)	204
Tru1I	TTAA	1 cut(s)	114
Tru9I	TTAA	1 cut(s)	114
TscAI	CASTG	1 cut(s)	244
TspDTI	ATGAA	2 cut(s)	43, 383
TspRI	CASTG	1 cut(s)	244
XapI	RAATTY	1 cut(s)	141
XmiI	GTMKAC	1 cut(s)	150
XspI	CTAG	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.