Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0004930

Physical Location & Seq

Genomic Coordinates Reverse (-)

4327326 .. 4328201

Gene Structure 876 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g03440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGACTGTGACAGGGAGAACTATGGAACATGTGCATGTCAATGGTTCTGTCCACACAAAGGCGAAGGTTATTTTTATAATGGGTCCGACAGGGTGTGGAAAAACCAAACTTTCCATAGACCTAGCTACCCATTACGGGGGAGAAGTAATTAATTCAGACAAAATCCAAGCCTACAAAGGCCTGGACATTGTCACTAACAAAGCCACAGAATCTGAGCAACGAGGCATCCGTCATCACTTGCTAGGGTTCGTAGAAGACCCAGTAGCTGATTTCTCCGTTGATGAATTTTGTCGTCGTGTGCAAACTTCAATCGATGAGATCACAAGGCGCAACTGCCTCCCAATCATTGCTGGCGGATCCAACTCTTATATCGAGGCACTCATCGAAGATCCAGTGATTGAGTTTCGAAATAAATATGATTGCTGTTTTATATGGCTTGATGTGTCGTTGCCTGTGCTATATAATCGTGTGTCCAAAAGAGTTGACGAAATGGTGGCTGCAGGATTAGTGGATGAGCTTCGTGAAATGTTTGCTCCAGGGGTGAATTATGATGGTGGCATTCGCCGAGCAATCGGAGCTCCGGAGATGCATCCATACTTCATGGCTGAAATGAACAACAATATAGTAGATGATGATAAGGTTCGTAAGGAATTTCTGCTGAAAGACGGCATTTGGAAAACCAAAGAAAATACTTGTAAACTTGCTGAACGCCAAGTGCAGAAAATTCAACTTCTTAGCGACAAATGGGATATTCATCGTATTGAAGTCACTGCTGTGCATGAGAACTGTGGAAAGGAAGCTGTGGTTGCCTGGGAAACCTTGGTTTTAAAGCCAAGTTTCACCATTGTGGATGGATTTTTGAATAAAGATGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009058 GO:0009308 GO:0009451 GO:0009536 GO:0009690 GO:0009691 GO:0009824 GO:0009987 GO:0010467 GO:0010817 GO:0016070 GO:0016740 GO:0016765 GO:0034470 GO:0034641 GO:0034660 GO:0034754 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0052381 GO:0052622 GO:0052623 GO:0065007 GO:0065008 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00908 ko01100 ko01110 map00908 map01100 map01110

Pfam Domains

Protein Families

IPPT

Protein Analysis

292

Amino Acids

32.8

Weight (kDa)

5.76

Isoelectric Point (pI)

34.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IPT	PF01745	22 - 178	5.6e-12	Isopentenyl transferase
AAA_18	PF13238	24 - 163	5.3e-06	AAA domain
IPPT	PF01715	56 - 130	1.3e-19	IPP transferase
IPPT	PF01715	137 - 240	3.2e-14	IPP transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004930)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63110
fragaria_vesca	FvH4_2g23840
malus_domestica	MD00G1084500.v1.1 MD03G1267900.v1.1 MD11G1288800.v1.1
prunus_persica	Prupe.5G047700_v2.0.a1 Prupe.8G243600_v2.0.a1
pyrus_communis	pycom06g03440
rosa_chinensis	RchiOBHm_Chr6g0291431 RchiOBHm_Chr6g0308751
rosa_laevigata	RLG00000010623 RLG00000010625 RLG00000012115
rosa_multiflora	Rmu_sc0003735.1_g000032
rosa_roxburghii	Rroxscaffold_7G00159980 Rroxscaffold_7G00176060
rosa_rugosa	Rorug06G0219300 Rorug06G0368000
rosa_samantha	Rh6AG331600 Rh6AG479000 Rh6AG479100 Rh6BG338500 Rh6BG488600 Rh6BG488700 Rh6CG344700 Rh6CG493900 Rh6DG331600 Rh6DG479500
rosa_wichuraiana	Rw6G028790 Rw6G041750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	77
AccIII	TCCGGA	1 cut(s)	580
AciI	CCGC	1 cut(s)	354
AclWI	GGATC	3 cut(s)	351, 364, 383
AcsI	RAATTY	3 cut(s)	284, 650, 723
AfiI	CCNNNNNNNGG	3 cut(s)	58, 135, 136
AflIII	ACRYGT	1 cut(s)	28
AgsI	TTSAA	4 cut(s)	309, 728, 764, 862
AjnI	CCWGG	3 cut(s)	180, 535, 809
AleI	CACNNNNGTG	2 cut(s)	773, 845
AluBI	AGCT	5 cut(s)	125, 266, 517, 578, 800
AluI	AGCT	5 cut(s)	125, 266, 517, 578, 800
Alw21I	GWGCWC	1 cut(s)	580
AlwI	GGATC	3 cut(s)	351, 364, 383
AlwNI	CAGNNNCTG	2 cut(s)	212, 266
Aor13HI	TCCGGA	1 cut(s)	580
AoxI	GGCC	1 cut(s)	178
ApeKI	GCWGC	1 cut(s)	497
ApoI	RAATTY	3 cut(s)	284, 650, 723
AseI	ATTAAT	1 cut(s)	150
AspLEI	GCGC	1 cut(s)	330
AspS9I	GGNCC	1 cut(s)	83
AsuHPI	GGTGA	2 cut(s)	553, 832
AsuII	TTCGAA	1 cut(s)	406
AvaII	GGWCC	1 cut(s)	83
BamHI	GGATCC	1 cut(s)	356
BanII	GRGCYC	1 cut(s)	580
BbsI	GAAGAC	1 cut(s)	261
Bbv12I	GWGCWC	1 cut(s)	580
BbvI	GCAGC	1 cut(s)	484
BccI	CCATC	3 cut(s)	545, 845, 863
BceAI	ACGGC	1 cut(s)	682
BciT130I	CCWGG	3 cut(s)	182, 537, 811
BfaI	CTAG	2 cut(s)	122, 242
BfmI	CTRYAG	1 cut(s)	498
BisI	GCNGC	1 cut(s)	498
BlsI	GCNGC	1 cut(s)	499
Bme1390I	CCNGG	3 cut(s)	182, 537, 811
Bme18I	GGWCC	1 cut(s)	83
BmgT120I	GGNCC	1 cut(s)	83
BmiI	GGNNCC	2 cut(s)	84, 358
BmrFI	CCNGG	3 cut(s)	182, 537, 811
BmrI	ACTGGG	1 cut(s)	254
BmsI	GCATC	3 cut(s)	234, 576, 598
BmuI	ACTGGG	1 cut(s)	254
BpiI	GAAGAC	1 cut(s)	261
BpmI	CTGGAG	1 cut(s)	519
Bpu14I	TTCGAA	1 cut(s)	406
Bsa29I	ATCGAT	1 cut(s)	312
BsaBI	GATNNNNATC	1 cut(s)	753
BsaJI	CCNNGG	3 cut(s)	536, 810, 819
BsaWI	WCCGGW	1 cut(s)	580
Bsc4I	CCNNNNNNNGG	3 cut(s)	58, 135, 136
Bse1I	ACTGG	2 cut(s)	260, 392
Bse3DI	GCAATG	1 cut(s)	345
Bse8I	GATNNNNATC	1 cut(s)	753
BseAI	TCCGGA	1 cut(s)	580
BseBI	CCWGG	3 cut(s)	182, 537, 811
BseCI	ATCGAT	1 cut(s)	312
BseDI	CCNNGG	3 cut(s)	536, 810, 819
BseGI	GGATG	4 cut(s)	225, 517, 589, 856
BseJI	GATNNNNATC	1 cut(s)	753
BseLI	CCNNNNNNNGG	3 cut(s)	58, 135, 136
BseMI	GCAATG	1 cut(s)	345
BseMII	CTCAG	1 cut(s)	204
BseNI	ACTGG	2 cut(s)	260, 392
BseXI	GCAGC	1 cut(s)	484
BsgI	GTGCAG	1 cut(s)	737
BshFI	GGCC	1 cut(s)	180
BshVI	ATCGAT	1 cut(s)	312
BsiHKAI	GWGCWC	1 cut(s)	580
BsiSI	CCGG	1 cut(s)	581
BslI	CCNNNNNNNGG	3 cut(s)	58, 135, 136
BsmI	GAATGC	1 cut(s)	558
BsnI	GGCC	1 cut(s)	180
Bsp119I	TTCGAA	1 cut(s)	406
Bsp1286I	GDGCHC	1 cut(s)	580
Bsp13I	TCCGGA	1 cut(s)	580
Bsp143I	GATC	3 cut(s)	318, 356, 388
BspACI	CCGC	1 cut(s)	354
BspANI	GGCC	1 cut(s)	180
BspCNI	CTCAG	1 cut(s)	205
BspDI	ATCGAT	1 cut(s)	312
BspEI	TCCGGA	1 cut(s)	580
BspLI	GGNNCC	2 cut(s)	84, 358
BspMAI	CTGCAG	1 cut(s)	502
BspPI	GGATC	3 cut(s)	351, 364, 383
BspT104I	TTCGAA	1 cut(s)	406
BsrDI	GCAATG	1 cut(s)	345
BsrI	ACTGG	2 cut(s)	260, 392
BssECI	CCNNGG	3 cut(s)	536, 810, 819
BssMI	GATC	3 cut(s)	318, 356, 388
BssT1I	CCWWGG	1 cut(s)	819
Bst2UI	CCWGG	3 cut(s)	182, 537, 811
Bst4CI	ACNGT	2 cut(s)	7, 788
BstBI	TTCGAA	1 cut(s)	406
BstC8I	GCNNGC	1 cut(s)	352
BstDEI	CTNAG	2 cut(s)	213, 734
BstF5I	GGATG	4 cut(s)	225, 517, 589, 856
BstHHI	GCGC	1 cut(s)	330
BstKTI	GATC	3 cut(s)	321, 359, 391
BstMBI	GATC	3 cut(s)	318, 356, 388
BstMWI	GCNNNNNNNGC	2 cut(s)	575, 806
BstNI	CCWGG	3 cut(s)	182, 537, 811
BstNSI	RCATGY	2 cut(s)	32, 38
BstSCI	CCNGG	3 cut(s)	180, 535, 809
BstSFI	CTRYAG	1 cut(s)	498
BstV1I	GCAGC	1 cut(s)	484
BstV2I	GAAGAC	1 cut(s)	261
BstX2I	RGATCY	2 cut(s)	356, 388
BstYI	RGATCY	2 cut(s)	356, 388
Bsu15I	ATCGAT	1 cut(s)	312
BsuRI	GGCC	1 cut(s)	180
BsuTUI	ATCGAT	1 cut(s)	312
BtsCI	GGATG	4 cut(s)	225, 517, 589, 856
BtsI	GCAGTG	1 cut(s)	768
BtsIMutI	CAGTG	2 cut(s)	399, 768
Cac8I	GCNNGC	1 cut(s)	352
CaiI	CAGNNNCTG	2 cut(s)	212, 266
CfoI	GCGC	1 cut(s)	330
Cfr13I	GGNCC	1 cut(s)	83
ClaI	ATCGAT	1 cut(s)	312
CviAII	CATG	4 cut(s)	29, 35, 601, 779
DdeI	CTNAG	2 cut(s)	213, 734
DpnI	GATC	3 cut(s)	320, 358, 390
DpnII	GATC	3 cut(s)	318, 356, 388
DraI	TTTAAA	1 cut(s)	828
EciI	GGCGGA	1 cut(s)	369
Ecl136II	GAGCTC	1 cut(s)	578
Eco130I	CCWWGG	1 cut(s)	819
Eco147I	AGGCCT	1 cut(s)	180
Eco24I	GRGCYC	1 cut(s)	580
Eco47I	GGWCC	1 cut(s)	83
Eco53kI	GAGCTC	1 cut(s)	578
EcoICRI	GAGCTC	1 cut(s)	578
EcoRII	CCWGG	3 cut(s)	180, 535, 809
EcoT14I	CCWWGG	1 cut(s)	819
EcoT22I	ATGCAT	1 cut(s)	591
EcoT38I	GRGCYC	1 cut(s)	580
ErhI	CCWWGG	1 cut(s)	819
FaeI	CATG	4 cut(s)	32, 38, 604, 782
FatI	CATG	4 cut(s)	28, 34, 600, 778
Fnu4HI	GCNGC	1 cut(s)	498
FokI	GGATG	4 cut(s)	212, 524, 576, 863
FriOI	GRGCYC	1 cut(s)	580
Fsp4HI	GCNGC	1 cut(s)	498
FspBI	CTAG	2 cut(s)	122, 242
GlaI	GCGC	1 cut(s)	329
GluI	GCNGC	1 cut(s)	498
GsuI	CTGGAG	1 cut(s)	519
HaeIII	GGCC	1 cut(s)	180
HapII	CCGG	1 cut(s)	581
HhaI	GCGC	1 cut(s)	330
Hin1II	CATG	4 cut(s)	32, 38, 604, 782
Hin6I	GCGC	1 cut(s)	328
HinP1I	GCGC	1 cut(s)	328
HincII	GTYRAC	1 cut(s)	484
HindII	GTYRAC	1 cut(s)	484
HinfI	GANTC	1 cut(s)	209
HpaII	CCGG	1 cut(s)	581
HphI	GGTGA	2 cut(s)	553, 832
Hpy166II	GTNNAC	3 cut(s)	52, 484, 698
Hpy188I	TCNGA	4 cut(s)	87, 157, 214, 575
Hpy188III	TCNNGA	2 cut(s)	521, 581
Hpy8I	GTNNAC	3 cut(s)	52, 484, 698
Hpy99I	CGWCG	1 cut(s)	297
HpyAV	CCTTC	1 cut(s)	58
HpyCH4III	ACNGT	2 cut(s)	7, 788
HpyCH4V	TGCA	6 cut(s)	34, 301, 500, 589, 718, 778
HpyF10VI	GCNNNNNNNGC	2 cut(s)	575, 806
HpyF3I	CTNAG	2 cut(s)	213, 734
Hsp92II	CATG	4 cut(s)	32, 38, 604, 782
HspAI	GCGC	1 cut(s)	328
Kpn2I	TCCGGA	1 cut(s)	580
Kzo9I	GATC	3 cut(s)	318, 356, 388
LmnI	GCTCC	3 cut(s)	538, 575, 583
Lsp1109I	GCAGC	1 cut(s)	484
LweI	GCATC	3 cut(s)	234, 576, 598
MaeI	CTAG	2 cut(s)	122, 242
MaeIII	GTNAC	3 cut(s)	7, 190, 766
MalI	GATC	3 cut(s)	320, 358, 390
MboI	GATC	3 cut(s)	318, 356, 388
MboII	GAAGA	2 cut(s)	266, 398
MflI	RGATCY	2 cut(s)	356, 388
MhlI	GDGCHC	1 cut(s)	580
MluCI	AATT	6 cut(s)	147, 151, 284, 544, 650, 723
MmeI	TCCRAC	2 cut(s)	110, 384
MnlI	CCTC	3 cut(s)	215, 347, 367
Mph1103I	ATGCAT	1 cut(s)	591
MroI	TCCGGA	1 cut(s)	580
MseI	TTAA	2 cut(s)	150, 827
MslI	CAYNNNNRTG	4 cut(s)	33, 39, 773, 845
MspI	CCGG	1 cut(s)	581
MspR9I	CCNGG	3 cut(s)	182, 537, 811
Mva1269I	GAATGC	1 cut(s)	558
MvaI	CCWGG	3 cut(s)	182, 537, 811
MwoI	GCNNNNNNNGC	2 cut(s)	575, 806
NdeII	GATC	3 cut(s)	318, 356, 388
NlaIII	CATG	4 cut(s)	32, 38, 604, 782
NlaIV	GGNNCC	2 cut(s)	84, 358
NmeAIII	GCCGAG	1 cut(s)	590
NmuCI	GTSAC	3 cut(s)	7, 190, 766
NsiI	ATGCAT	1 cut(s)	591
NspI	RCATGY	2 cut(s)	32, 38
NspV	TTCGAA	1 cut(s)	406
OliI	CACNNNNGTG	2 cut(s)	773, 845
PceI	AGGCCT	1 cut(s)	180
PciI	ACATGT	1 cut(s)	28
PcsI	WCGNNNNNNNCGW	1 cut(s)	226
PctI	GAATGC	1 cut(s)	558
PfeI	GAWTC	1 cut(s)	209
PflFI	GACNNNGTC	1 cut(s)	188
PkrI	GCNGC	1 cut(s)	499
PscI	ACATGT	1 cut(s)	28
PshBI	ATTAAT	1 cut(s)	150
PsiI	TTATAA	1 cut(s)	77
Psp124BI	GAGCTC	1 cut(s)	580
Psp6I	CCWGG	3 cut(s)	180, 535, 809
PspGI	CCWGG	3 cut(s)	180, 535, 809
PspN4I	GGNNCC	2 cut(s)	84, 358
PspPI	GGNCC	1 cut(s)	83
PstI	CTGCAG	1 cut(s)	502
PstNI	CAGNNNCTG	2 cut(s)	212, 266
PsuI	RGATCY	2 cut(s)	356, 388
PsyI	GACNNNGTC	1 cut(s)	188
RseI	CAYNNNNRTG	4 cut(s)	33, 39, 773, 845
SacI	GAGCTC	1 cut(s)	580
SaqAI	TTAA	2 cut(s)	150, 827
SatI	GCNGC	1 cut(s)	498
Sau3AI	GATC	3 cut(s)	318, 356, 388
Sau96I	GGNCC	1 cut(s)	83
ScrFI	CCNGG	3 cut(s)	182, 537, 811
SduI	GDGCHC	1 cut(s)	580
SetI	ASST	9 cut(s)	69, 123, 127, 268, 519, 580, 642, 802, 821
SfaNI	GCATC	3 cut(s)	234, 576, 598
SfcI	CTRYAG	1 cut(s)	498
SfuI	TTCGAA	1 cut(s)	406
SinI	GGWCC	1 cut(s)	83
SmiMI	CAYNNNNRTG	4 cut(s)	33, 39, 773, 845
Sse9I	AATT	6 cut(s)	147, 151, 284, 544, 650, 723
SseBI	AGGCCT	1 cut(s)	180
SsiI	CCGC	1 cut(s)	354
SspMI	CTAG	2 cut(s)	122, 242
SstI	GAGCTC	1 cut(s)	580
StuI	AGGCCT	1 cut(s)	180
StyD4I	CCNGG	3 cut(s)	180, 535, 809
StyI	CCWWGG	1 cut(s)	819
TaaI	ACNGT	2 cut(s)	7, 788
TaqI	TCGA	4 cut(s)	312, 372, 384, 406
TasI	AATT	6 cut(s)	147, 151, 284, 544, 650, 723
TfiI	GAWTC	1 cut(s)	209
Tru1I	TTAA	2 cut(s)	150, 827
Tru9I	TTAA	2 cut(s)	150, 827
TscAI	CASTG	2 cut(s)	399, 775
TseFI	GTSAC	3 cut(s)	7, 190, 766
TseI	GCWGC	1 cut(s)	497
Tsp45I	GTSAC	3 cut(s)	7, 190, 766
TspDTI	ATGAA	4 cut(s)	297, 589, 626, 743
TspGWI	ACGGA	2 cut(s)	218, 265
TspRI	CASTG	2 cut(s)	399, 775
Tth111I	GACNNNGTC	1 cut(s)	188
VpaK11BI	GGWCC	1 cut(s)	83
VspI	ATTAAT	1 cut(s)	150
XapI	RAATTY	3 cut(s)	284, 650, 723
XceI	RCATGY	2 cut(s)	32, 38
XspI	CTAG	2 cut(s)	122, 242
Zsp2I	ATGCAT	1 cut(s)	591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.