Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0004930

Physical Location & Seq

Genomic Coordinates Forward (+)

21247532 .. 21249228

Gene Structure 1697 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G243600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGAATTTGATGTGCAAGGAAATGCAAACATTACTTCCATCCGGTGGTTACAATCATAAAATGGACGTGTTCAATCCTCGCCGGCAGAAGGAGAAGGTGGTGATCGTAATGGGAGCAACCGGGACGGGGAAATCGAGGCTCTCGATCGACCTGGCCACCCATCTCGCCGCAGAAATCATAAACTCTGACAAAATGCAAGTCTACAAGGGGCTTGACATAGCCACCAACAAAATAACCGAAGAAGAACAACGTGGGGTACCGCACCATTTGCTAGGGATACTAGATCCTAATGAAGATTTTACAGCAACAGATTTTTGTGACGAAACCTCACTTACCATTGAATCCATTTTAGGCCGGGATCGCCTTCCAATCATCGTTGGAGGCTCCAATTCGTACATTGAGGCCTTAATTGATGACTACGACTATAAGTTTCGGTCCAAATACGAATGTTGTTTTTTATGGGTAAACGTGTCCACGCCGGTTCTGCACTCATTTGTGTCAAAACGGGTGGACAAGATGGTCGAAAATGGGATGGTGGATGAGGTGAGGGAGTTCTTCCATCCCAATGCGGATTACTCGAAAGGGATTCGAAGGGCAATTGGGGTGCCTGAATTCGATAAGTACTTTCGGTATGGGCCATTTTTGGATGAAGAAACTAAAGCTAGGCTACTAGAACAAGCAGTGGAGGAAATTAAGAAGAATAATTGCAAATTGGCCTCCCGCCAATTGGAGAAGATTCAAAGACTTAGAAATGTTAAAGGGTGGAATTTGCATCCGTTGGATGCCACGGAGGTGTTTCGAAAGCGCGGCAAGGAATCCGATGAAGCCTGGGAAAAGTTTGTTTATGGGCCAAGTGCTCAGATTGTTCGTCAGTTTCTGTACAATTATGCCACAGCTGAGGTCCCTGTCAATCTTGGTGCCATGAGGGTCCCTATGGAAAGTGCAGCACTCGCTGCTGCAACTCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009058 GO:0009308 GO:0009451 GO:0009536 GO:0009690 GO:0009691 GO:0009824 GO:0009987 GO:0010467 GO:0010817 GO:0016070 GO:0016740 GO:0016765 GO:0034470 GO:0034641 GO:0034660 GO:0034754 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0052381 GO:0052622 GO:0052623 GO:0065007 GO:0065008 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00908 ko01100 ko01110 map00908 map01100 map01110

Pfam Domains

Protein Families

IPPT

Protein Analysis

323

Amino Acids

36.71

Weight (kDa)

6.42

Isoelectric Point (pI)

38.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004930)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63110
fragaria_vesca	FvH4_2g23840
malus_domestica	MD00G1084500.v1.1 MD03G1267900.v1.1 MD11G1288800.v1.1
prunus_persica	Prupe.5G047700_v2.0.a1 Prupe.8G243600_v2.0.a1
pyrus_communis	pycom06g03440
rosa_chinensis	RchiOBHm_Chr6g0291431 RchiOBHm_Chr6g0308751
rosa_laevigata	RLG00000010623 RLG00000010625 RLG00000012115
rosa_multiflora	Rmu_sc0003735.1_g000032
rosa_roxburghii	Rroxscaffold_7G00159980 Rroxscaffold_7G00176060
rosa_rugosa	Rorug06G0219300 Rorug06G0368000
rosa_samantha	Rh6AG331600 Rh6AG479000 Rh6AG479100 Rh6BG338500 Rh6BG488600 Rh6BG488700 Rh6CG344700 Rh6CG493900 Rh6DG331600 Rh6DG479500
rosa_wichuraiana	Rw6G028790 Rw6G041750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	518
Acc65I	GGTACC	1 cut(s)	256
AccB1I	GGYRCC	3 cut(s)	256, 604, 917
AccB7I	CCANNNNNTGG	1 cut(s)	44
AccI	GTMKAC	1 cut(s)	201
AccII	CGCG	1 cut(s)	807
AciI	CCGC	5 cut(s)	168, 260, 569, 721, 807
AclWI	GGATC	2 cut(s)	278, 366
AcoI	YGGCCR	1 cut(s)	153
AcsI	RAATTY	3 cut(s)	4, 611, 766
AfaI	GTAC	4 cut(s)	258, 395, 623, 881
AfiI	CCNNNNNNNGG	4 cut(s)	44, 88, 126, 727
AflIII	ACRYGT	2 cut(s)	66, 468
AgsI	TTSAA	3 cut(s)	73, 341, 740
AjiI	CACGTC	1 cut(s)	67
AjnI	CCWGG	2 cut(s)	150, 827
AleI	CACNNNNGTG	1 cut(s)	791
AluBI	AGCT	2 cut(s)	662, 896
AluI	AGCT	2 cut(s)	662, 896
Alw21I	GWGCWC	1 cut(s)	859
AlwI	GGATC	2 cut(s)	278, 366
AlwNI	CAGNNNCTG	1 cut(s)	877
AoxI	GGCC	6 cut(s)	153, 352, 402, 635, 714, 848
ApeKI	GCWGC	3 cut(s)	944, 953, 956
ApoI	RAATTY	3 cut(s)	4, 611, 766
ArsI	GACNNNNNNTTYG	2 cut(s)	183, 215
Asp718I	GGTACC	1 cut(s)	256
AspLEI	GCGC	1 cut(s)	807
AspS9I	GGNCC	5 cut(s)	435, 635, 848, 901, 928
AsuC2I	CCSGG	2 cut(s)	121, 356
AsuHPI	GGTGA	2 cut(s)	112, 556
AsuII	TTCGAA	2 cut(s)	589, 799
AvaII	GGWCC	3 cut(s)	435, 901, 928
BalI	TGGCCA	1 cut(s)	155
BanI	GGYRCC	3 cut(s)	256, 604, 917
Bbv12I	GWGCWC	1 cut(s)	859
BbvCI	CCTCAGC	1 cut(s)	897
BbvI	GCAGC	3 cut(s)	940, 943, 956
BccI	CCATC	5 cut(s)	46, 168, 511, 526, 567
BciT130I	CCWGG	2 cut(s)	152, 829
BciVI	GTATCC	1 cut(s)	270
BcnI	CCSGG	2 cut(s)	121, 356
BfaI	CTAG	5 cut(s)	272, 281, 663, 671, 967
BfuI	GTATCC	1 cut(s)	270
BisI	GCNGC	5 cut(s)	168, 808, 945, 954, 957
BlsI	GCNGC	5 cut(s)	169, 809, 946, 955, 958
BmcAI	AGTACT	1 cut(s)	623
Bme1390I	CCNGG	4 cut(s)	121, 152, 356, 829
Bme18I	GGWCC	3 cut(s)	435, 901, 928
BmgBI	CACGTC	1 cut(s)	67
BmgT120I	GGNCC	5 cut(s)	435, 635, 848, 901, 928
BmiI	GGNNCC	7 cut(s)	258, 385, 606, 903, 919, 929, 930
BmrFI	CCNGG	4 cut(s)	121, 152, 356, 829
BmsI	GCATC	2 cut(s)	772, 781
Bpu10I	CCTNAGC	1 cut(s)	897
Bpu14I	TTCGAA	2 cut(s)	589, 799
BpuMI	CCSGG	2 cut(s)	121, 356
BsaJI	CCNNGG	2 cut(s)	786, 828
BsaWI	WCCGGW	1 cut(s)	41
Bsc4I	CCNNNNNNNGG	4 cut(s)	44, 88, 126, 727
Bse118I	RCCGGY	2 cut(s)	81, 478
BseBI	CCWGG	2 cut(s)	152, 829
BseDI	CCNNGG	2 cut(s)	786, 828
BseGI	GGATG	7 cut(s)	38, 537, 544, 559, 652, 772, 787
BseLI	CCNNNNNNNGG	4 cut(s)	44, 88, 126, 727
BseMII	CTCAG	2 cut(s)	872, 888
BseXI	GCAGC	3 cut(s)	940, 943, 956
BsgI	GTGCAG	2 cut(s)	470, 963
Bsh1236I	CGCG	1 cut(s)	807
Bsh1285I	CGRYCG	1 cut(s)	147
BshFI	GGCC	6 cut(s)	155, 354, 404, 637, 716, 850
BshNI	GGYRCC	3 cut(s)	256, 604, 917
BsiEI	CGRYCG	1 cut(s)	147
BsiHKAI	GWGCWC	1 cut(s)	859
BsiSI	CCGG	5 cut(s)	42, 82, 120, 355, 479
BslFI	GGGAC	3 cut(s)	136, 887, 914
BslI	CCNNNNNNNGG	4 cut(s)	44, 88, 126, 727
BsmFI	GGGAC	3 cut(s)	136, 887, 914
BsnI	GGCC	6 cut(s)	155, 354, 404, 637, 716, 850
Bsp119I	TTCGAA	2 cut(s)	589, 799
Bsp1286I	GDGCHC	1 cut(s)	859
Bsp1407I	TGTACA	1 cut(s)	879
Bsp143I	GATC	4 cut(s)	102, 144, 283, 358
BspACI	CCGC	5 cut(s)	168, 260, 569, 721, 807
BspANI	GGCC	6 cut(s)	155, 354, 404, 637, 716, 850
BspCNI	CTCAG	2 cut(s)	871, 889
BspFNI	CGCG	1 cut(s)	807
BspLI	GGNNCC	7 cut(s)	258, 385, 606, 903, 919, 929, 930
BspPI	GGATC	2 cut(s)	278, 366
BspT104I	TTCGAA	2 cut(s)	589, 799
BspT107I	GGYRCC	3 cut(s)	256, 604, 917
BsrFI	RCCGGY	2 cut(s)	81, 478
BsrGI	TGTACA	1 cut(s)	879
BssAI	RCCGGY	2 cut(s)	81, 478
BssECI	CCNNGG	2 cut(s)	786, 828
BssMI	GATC	4 cut(s)	102, 144, 283, 358
Bst2UI	CCWGG	2 cut(s)	152, 829
BstAPI	GCANNNNNTGC	2 cut(s)	268, 953
BstAUI	TGTACA	1 cut(s)	879
BstBI	TTCGAA	2 cut(s)	589, 799
BstC8I	GCNNGC	1 cut(s)	83
BstDEI	CTNAG	3 cut(s)	746, 858, 897
BstDSI	CCRYGG	1 cut(s)	786
BstF5I	GGATG	7 cut(s)	38, 537, 544, 559, 652, 772, 787
BstFNI	CGCG	1 cut(s)	807
BstHHI	GCGC	1 cut(s)	807
BstKTI	GATC	4 cut(s)	105, 147, 286, 361
BstMBI	GATC	4 cut(s)	102, 144, 283, 358
BstMCI	CGRYCG	1 cut(s)	147
BstMWI	GCNNNNNNNGC	5 cut(s)	268, 360, 484, 950, 953
BstNI	CCWGG	2 cut(s)	152, 829
BstSCI	CCNGG	4 cut(s)	119, 150, 354, 827
BstUI	CGCG	1 cut(s)	807
BstV1I	GCAGC	3 cut(s)	940, 943, 956
BstX2I	RGATCY	1 cut(s)	283
BstYI	RGATCY	1 cut(s)	283
BsuI	GTATCC	1 cut(s)	270
BsuRI	GGCC	6 cut(s)	155, 354, 404, 637, 716, 850
BtgI	CCRYGG	1 cut(s)	786
BtrI	CACGTC	1 cut(s)	67
BtsCI	GGATG	7 cut(s)	38, 537, 544, 559, 652, 772, 787
BtsI	GCAGTG	1 cut(s)	687
BtsIMutI	CAGTG	1 cut(s)	687
Cac8I	GCNNGC	1 cut(s)	83
CaiI	CAGNNNCTG	1 cut(s)	877
CfoI	GCGC	1 cut(s)	807
Cfr10I	RCCGGY	2 cut(s)	81, 478
Cfr13I	GGNCC	5 cut(s)	435, 635, 848, 901, 928
Csp6I	GTAC	4 cut(s)	257, 394, 622, 880
CspCI	CAANNNNNGTGG	2 cut(s)	489, 524
CviAII	CATG	1 cut(s)	922
CviQI	GTAC	4 cut(s)	257, 394, 622, 880
DdeI	CTNAG	3 cut(s)	746, 858, 897
DpnI	GATC	4 cut(s)	104, 146, 285, 360
DpnII	GATC	4 cut(s)	102, 144, 283, 358
DrdI	GACNNNNNNGTC	1 cut(s)	518
DseDI	GACNNNNNNGTC	1 cut(s)	518
EaeI	YGGCCR	1 cut(s)	153
Eco147I	AGGCCT	1 cut(s)	404
Eco47I	GGWCC	3 cut(s)	435, 901, 928
EcoO109I	RGGNCCY	2 cut(s)	901, 928
EcoRI	GAATTC	1 cut(s)	611
EcoRII	CCWGG	2 cut(s)	150, 827
FaeI	CATG	1 cut(s)	925
FaqI	GGGAC	3 cut(s)	136, 887, 914
FatI	CATG	1 cut(s)	921
FauI	CCCGC	1 cut(s)	728
FblI	GTMKAC	1 cut(s)	201
Fnu4HI	GCNGC	5 cut(s)	168, 808, 945, 954, 957
FokI	GGATG	7 cut(s)	25, 544, 546, 551, 659, 759, 794
Fsp4HI	GCNGC	5 cut(s)	168, 808, 945, 954, 957
FspBI	CTAG	5 cut(s)	272, 281, 663, 671, 967
GlaI	GCGC	1 cut(s)	806
GluI	GCNGC	5 cut(s)	168, 808, 945, 954, 957
HaeIII	GGCC	6 cut(s)	155, 354, 404, 637, 716, 850
HapII	CCGG	5 cut(s)	42, 82, 120, 355, 479
HhaI	GCGC	1 cut(s)	807
Hin1II	CATG	1 cut(s)	925
Hin6I	GCGC	1 cut(s)	805
HinP1I	GCGC	1 cut(s)	805
HinfI	GANTC	4 cut(s)	341, 586, 736, 815
HpaII	CCGG	5 cut(s)	42, 82, 120, 355, 479
HphI	GGTGA	2 cut(s)	112, 556
Hpy166II	GTNNAC	4 cut(s)	202, 466, 474, 511
Hpy188I	TCNGA	3 cut(s)	187, 820, 861
Hpy188III	TCNNGA	1 cut(s)	142
Hpy8I	GTNNAC	4 cut(s)	202, 466, 474, 511
HpyAV	CCTTC	4 cut(s)	82, 88, 374, 585
HpyCH4IV	ACGT	3 cut(s)	66, 250, 468
HpyCH4V	TGCA	8 cut(s)	15, 25, 196, 487, 708, 772, 944, 959
HpyF10VI	GCNNNNNNNGC	5 cut(s)	268, 360, 484, 950, 953
HpyF3I	CTNAG	3 cut(s)	746, 858, 897
HpySE526I	ACGT	3 cut(s)	66, 250, 468
Hsp92II	CATG	1 cut(s)	925
HspAI	GCGC	1 cut(s)	805
KflI	GGGWCCC	1 cut(s)	928
KpnI	GGTACC	1 cut(s)	260
KroI	GCCGGC	1 cut(s)	81
KroNI	GCCGGC	1 cut(s)	83
Kzo9I	GATC	4 cut(s)	102, 144, 283, 358
LmnI	GCTCC	2 cut(s)	113, 389
Lsp1109I	GCAGC	3 cut(s)	940, 943, 956
LweI	GCATC	2 cut(s)	772, 781
MaeI	CTAG	5 cut(s)	272, 281, 663, 671, 967
MaeII	ACGT	3 cut(s)	66, 250, 468
MaeIII	GTNAC	2 cut(s)	47, 317
MalI	GATC	4 cut(s)	104, 146, 285, 360
MboI	GATC	4 cut(s)	102, 144, 283, 358
MboII	GAAGA	7 cut(s)	251, 254, 305, 547, 662, 709, 745
MfeI	CAATTG	2 cut(s)	597, 725
MflI	RGATCY	1 cut(s)	283
MhlI	GDGCHC	1 cut(s)	859
MlsI	TGGCCA	1 cut(s)	155
MluNI	TGGCCA	1 cut(s)	155
MmeI	TCCRAC	2 cut(s)	358, 759
Mox20I	TGGCCA	1 cut(s)	155
MroNI	GCCGGC	1 cut(s)	81
MscI	TGGCCA	1 cut(s)	155
MseI	TTAA	3 cut(s)	407, 693, 756
MslI	CAYNNNNRTG	2 cut(s)	564, 791
Msp20I	TGGCCA	1 cut(s)	155
MspA1I	CMGCKG	1 cut(s)	896
MspI	CCGG	5 cut(s)	42, 82, 120, 355, 479
MspR9I	CCNGG	4 cut(s)	121, 152, 356, 829
MunI	CAATTG	2 cut(s)	597, 725
MvaI	CCWGG	2 cut(s)	152, 829
MvnI	CGCG	1 cut(s)	807
MwoI	GCNNNNNNNGC	5 cut(s)	268, 360, 484, 950, 953
NaeI	GCCGGC	1 cut(s)	83
NciI	CCSGG	2 cut(s)	121, 356
NdeII	GATC	4 cut(s)	102, 144, 283, 358
NgoMIV	GCCGGC	1 cut(s)	81
NlaIII	CATG	1 cut(s)	925
NlaIV	GGNNCC	7 cut(s)	258, 385, 606, 903, 919, 929, 930
NmuCI	GTSAC	1 cut(s)	317
NspV	TTCGAA	2 cut(s)	589, 799
OliI	CACNNNNGTG	1 cut(s)	791
PceI	AGGCCT	1 cut(s)	404
PcsI	WCGNNNNNNNCGW	2 cut(s)	131, 140
PdiI	GCCGGC	1 cut(s)	83
PfeI	GAWTC	4 cut(s)	341, 586, 736, 815
PflMI	CCANNNNNTGG	1 cut(s)	44
PkrI	GCNGC	5 cut(s)	169, 809, 946, 955, 958
Ple19I	CGATCG	1 cut(s)	147
PpuMI	RGGWCCY	2 cut(s)	901, 928
Psp5II	RGGWCCY	2 cut(s)	901, 928
Psp6I	CCWGG	2 cut(s)	150, 827
PspGI	CCWGG	2 cut(s)	150, 827
PspN4I	GGNNCC	7 cut(s)	258, 385, 606, 903, 919, 929, 930
PspPI	GGNCC	5 cut(s)	435, 635, 848, 901, 928
PspPPI	RGGWCCY	2 cut(s)	901, 928
PstNI	CAGNNNCTG	1 cut(s)	877
PsuI	RGATCY	1 cut(s)	283
PvuI	CGATCG	1 cut(s)	147
PvuII	CAGCTG	1 cut(s)	896
RsaI	GTAC	4 cut(s)	258, 395, 623, 881
RsaNI	GTAC	4 cut(s)	257, 394, 622, 880
RseI	CAYNNNNRTG	2 cut(s)	564, 791
SaqAI	TTAA	3 cut(s)	407, 693, 756
SatI	GCNGC	5 cut(s)	168, 808, 945, 954, 957
Sau3AI	GATC	4 cut(s)	102, 144, 283, 358
Sau96I	GGNCC	5 cut(s)	435, 635, 848, 901, 928
ScaI	AGTACT	1 cut(s)	623
ScrFI	CCNGG	4 cut(s)	121, 152, 356, 829
SduI	GDGCHC	1 cut(s)	859
SfaNI	GCATC	2 cut(s)	772, 781
SfuI	TTCGAA	2 cut(s)	589, 799
SinI	GGWCC	3 cut(s)	435, 901, 928
SmiMI	CAYNNNNRTG	2 cut(s)	564, 791
SseBI	AGGCCT	1 cut(s)	404
SsiI	CCGC	5 cut(s)	168, 260, 569, 721, 807
SspMI	CTAG	5 cut(s)	272, 281, 663, 671, 967
StuI	AGGCCT	1 cut(s)	404
StyD4I	CCNGG	4 cut(s)	119, 150, 354, 827
TaiI	ACGT	3 cut(s)	69, 253, 471
TaqI	TCGA	8 cut(s)	134, 143, 147, 522, 578, 589, 615, 799
TaqII	GACCGA	1 cut(s)	423
TatI	WGTACW	2 cut(s)	621, 879
TauI	GCSGC	2 cut(s)	170, 810
TfiI	GAWTC	4 cut(s)	341, 586, 736, 815
Tru1I	TTAA	3 cut(s)	407, 693, 756
Tru9I	TTAA	3 cut(s)	407, 693, 756
TscAI	CASTG	1 cut(s)	687
TseFI	GTSAC	1 cut(s)	317
TseI	GCWGC	3 cut(s)	944, 953, 956
Tsp45I	GTSAC	1 cut(s)	317
TspDTI	ATGAA	4 cut(s)	17, 306, 663, 837
TspGWI	ACGGA	2 cut(s)	765, 803
TspRI	CASTG	1 cut(s)	687
Van91I	CCANNNNNTGG	1 cut(s)	44
VpaK11BI	GGWCC	3 cut(s)	435, 901, 928
XapI	RAATTY	3 cut(s)	4, 611, 766
XmiI	GTMKAC	1 cut(s)	201
XspI	CTAG	5 cut(s)	272, 281, 663, 671, 967
ZrmI	AGTACT	1 cut(s)	623

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.