RLG00000012115

Adenylate isopentenyltransferase 3

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Reverse (-)
15416728 .. 15420206
3479 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012115

Sequence Viewer

Length: 1062 bp
ATGACATCTCATGTGTTCATAGCCCCGTATTCTTGCCGCGTCTCACAAACCAACGAGATCATGACCATGAACATGATGACAATGTGCAAATTACAAACACAGACGTTACCAAACGTCCCACTGTCCATTGGCGGCGGGCACAGCCACAACCTCCTTGATGTGTTGAATGGCCACCGCCAGAAGGATAAGGTGGTGATAGTAATGGGCGCCACCGGAACGGGCAAGTCAAAGCTCTCCATCGACCTGGCTACCCGCTTCCCGGCCGAAATCATCAACTCCGACAAAATGCAAATCTACGAGGGCCTTGACATCGCCACCAACAAAATATCACCTCAAGAACAACGCGGCGTCCCCCACCATTTGCTTGGAGTTTTAAACCCCAATGTGGATTTCTCTGCCGATGACTTCTGTGGCGTCACCTGCGTCACCGTCGACTCGATCTTAAACCGCGACCGGCTTCCAATCATCGTTGGAGGCTCGAACTCGTACATAGAGGCGTTGATCGACGGCTACGATAAGATGTTCCGGTCAAGATATGACTGCTGCTTTCTCTGGGTGGATGTATCCTTACCCGTTTTGCATTCTTTTGTTTCCGACCGGGTCGATCAGATGGTGGAGAATGGAATGGTGGAGGAGGTGAGAGAGCTCTTTGATCCGAATGCGGATTATACAAAAGGGATCAGAAGGGCTATCGGTGTGCCGGAGTTTGATGAATTTTTCCGGTATGGCCCGTTTTTGGATGAGGAAACTAGAGCCGGGTTACTTGAACAAGCGATAAATGAAGTAAAAGACAATACATGCAAGTTGGCATGTAGGCAATTGGAGAAGATTCGAAGACTTAGGAATAAAGGGTGGAGTCTGCATCCACTTGATGCCACTGAGGTGTTCCGGAAGCGTGGCAAGGAGGCTGATGAGGCCTGGGACAGGCTGGTTTCGGGGCCAAGCGCAGTGATTGTTCGCCAATTTCTTTACAATATCAAGGCCGAAGTTCCCACAAATCTCACTGCCATCAGGGTTCCGGCCGCAATGGAAACTGCAGCTCTTGCGGCTGCAACTTACTAG

Protein Analysis

354

Amino Acids

39.5

Weight (kDa)

5.81

Isoelectric Point (pI)

33.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IPT PF01745 63 - 170 1.3e-06 Isopentenyl transferase
IPPT PF01715 97 - 173 3e-22 IPP transferase
IPPT PF01715 177 - 278 2.3e-14 IPP transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 428
Acc36I ACCTGC 1 cut(s) 428
AccB1I GGYRCC 1 cut(s) 206
AccI GTMKAC 1 cut(s) 432
AccII CGCG 3 cut(s) 39, 345, 450
AccIII TCCGGA 1 cut(s) 888
AclWI GGATC 2 cut(s) 647, 686
AcoI YGGCCR 3 cut(s) 169, 261, 1020
AcsI RAATTY 1 cut(s) 713
AcyI GRCGYC 3 cut(s) 207, 348, 414
AfaI GTAC 1 cut(s) 488
AfiI CCNNNNNNNGG 5 cut(s) 181, 259, 385, 736, 924
AgsI TTSAA 2 cut(s) 166, 767
AjnI CCWGG 2 cut(s) 243, 917
AjuI GAANNNNNNNTTGG 2 cut(s) 374, 406
AleI CACNNNNGTG 1 cut(s) 881
AluBI AGCT 3 cut(s) 232, 646, 1040
AluI AGCT 3 cut(s) 232, 646, 1040
Alw21I GWGCWC 1 cut(s) 648
Alw26I GTCTC 1 cut(s) 46
AlwI GGATC 2 cut(s) 647, 686
Aor13HI TCCGGA 1 cut(s) 888
AoxI GGCC 8 cut(s) 169, 261, 301, 727, 915, 938, 981, 1020
ApeKI GCWGC 3 cut(s) 543, 1037, 1049
ApoI RAATTY 1 cut(s) 713
AspLEI GCGC 2 cut(s) 209, 947
AspS9I GGNCC 3 cut(s) 301, 728, 938
AsuC2I CCSGG 3 cut(s) 260, 599, 757
AsuHPI GGTGA 5 cut(s) 205, 321, 409, 418, 649
AsuII TTCGAA 1 cut(s) 832
BaeGI GKGCMC 1 cut(s) 141
BalI TGGCCA 1 cut(s) 171
BanI GGYRCC 1 cut(s) 206
BanII GRGCYC 1 cut(s) 648
BbsI GAAGAC 1 cut(s) 841
Bbv12I GWGCWC 1 cut(s) 648
BbvI GCAGC 3 cut(s) 530, 1036, 1049
BccI CCATC 3 cut(s) 245, 604, 1016
BceAI ACGGC 1 cut(s) 523
BciT130I CCWGG 2 cut(s) 245, 919
BciVI GTATCC 1 cut(s) 574
BcnI CCSGG 3 cut(s) 260, 599, 757
BcoDI GTCTC 1 cut(s) 46
BfaI CTAG 2 cut(s) 750, 1060
BfmI CTRYAG 1 cut(s) 1035
BfoI RGCGCY 1 cut(s) 210
BfuAI ACCTGC 1 cut(s) 428
BfuI GTATCC 1 cut(s) 574
BisI GCNGC 8 cut(s) 37, 133, 346, 544, 1023, 1038, 1047, 1050
BlsI GCNGC 8 cut(s) 38, 134, 347, 545, 1024, 1039, 1048, 1051
Bme1390I CCNGG 5 cut(s) 245, 260, 599, 757, 919
BmgT120I GGNCC 3 cut(s) 301, 728, 938
BmiI GGNNCC 3 cut(s) 208, 939, 1017
BmrFI CCNGG 5 cut(s) 245, 260, 599, 757, 919
BmsI GCATC 2 cut(s) 862, 871
BpiI GAAGAC 1 cut(s) 841
Bpu14I TTCGAA 1 cut(s) 832
BpuEI CTTGAG 1 cut(s) 318
BpuMI CCSGG 3 cut(s) 260, 599, 757
BsaHI GRCGYC 3 cut(s) 207, 348, 414
BsaJI CCNNGG 1 cut(s) 918
BsaWI WCCGGW 4 cut(s) 212, 525, 720, 888
Bsc4I CCNNNNNNNGG 5 cut(s) 181, 259, 385, 736, 924
Bse118I RCCGGY 1 cut(s) 453
Bse3DI GCAATG 1 cut(s) 1032
BseAI TCCGGA 1 cut(s) 888
BseBI CCWGG 2 cut(s) 245, 919
BseDI CCNNGG 1 cut(s) 918
BseGI GGATG 3 cut(s) 565, 745, 862
BseLI CCNNNNNNNGG 5 cut(s) 181, 259, 385, 736, 924
BseMI GCAATG 1 cut(s) 1032
BseMII CTCAG 1 cut(s) 870
BseRI GAGGAG 1 cut(s) 647
BseSI GKGCMC 1 cut(s) 141
BseX3I CGGCCG 2 cut(s) 261, 1020
BseXI GCAGC 3 cut(s) 530, 1036, 1049
Bsh1236I CGCG 3 cut(s) 39, 345, 450
Bsh1285I CGRYCG 4 cut(s) 264, 454, 598, 1023
BshFI GGCC 8 cut(s) 171, 263, 303, 729, 917, 940, 983, 1022
BshNI GGYRCC 1 cut(s) 206
BsiEI CGRYCG 4 cut(s) 264, 454, 598, 1023
BsiHKAI GWGCWC 1 cut(s) 648
BslFI GGGAC 3 cut(s) 101, 335, 935
BslI CCNNNNNNNGG 5 cut(s) 181, 259, 385, 736, 924
BsmAI GTCTC 1 cut(s) 46
BsmBI CGTCTC 1 cut(s) 46
BsmFI GGGAC 3 cut(s) 101, 335, 935
BsmI GAATGC 2 cut(s) 580, 664
BsnI GGCC 8 cut(s) 171, 263, 303, 729, 917, 940, 983, 1022
Bsp119I TTCGAA 1 cut(s) 832
Bsp1286I GDGCHC 2 cut(s) 141, 648
Bsp13I TCCGGA 1 cut(s) 888
Bsp143I GATC 6 cut(s) 57, 438, 501, 604, 652, 678
BspANI GGCC 8 cut(s) 171, 263, 303, 729, 917, 940, 983, 1022
BspCNI CTCAG 1 cut(s) 871
BspEI TCCGGA 1 cut(s) 888
BspFNI CGCG 3 cut(s) 39, 345, 450
BspHI TCATGA 1 cut(s) 60
BspLI GGNNCC 3 cut(s) 208, 939, 1017
BspMAI CTGCAG 1 cut(s) 1039
BspMI ACCTGC 1 cut(s) 428
BspPI GGATC 2 cut(s) 647, 686
BspT104I TTCGAA 1 cut(s) 832
BspT107I GGYRCC 1 cut(s) 206
BsrDI GCAATG 1 cut(s) 1032
BsrFI RCCGGY 1 cut(s) 453
BssAI RCCGGY 1 cut(s) 453
BssECI CCNNGG 1 cut(s) 918
BssMI GATC 6 cut(s) 57, 438, 501, 604, 652, 678
BssNI GRCGYC 3 cut(s) 207, 348, 414
Bst2UI CCWGG 2 cut(s) 245, 919
Bst4CI ACNGT 2 cut(s) 123, 430
BstACI GRCGYC 3 cut(s) 207, 348, 414
BstAPI GCANNNNNTGC 1 cut(s) 1043
BstBI TTCGAA 1 cut(s) 832
BstC8I GCNNGC 1 cut(s) 137
BstDEI CTNAG 2 cut(s) 839, 879
BstENI CCTNNNNNAGG 1 cut(s) 922
BstF5I GGATG 3 cut(s) 565, 745, 862
BstFNI CGCG 3 cut(s) 39, 345, 450
BstH2I RGCGCY 1 cut(s) 210
BstHHI GCGC 2 cut(s) 209, 947
BstKTI GATC 6 cut(s) 60, 441, 504, 607, 655, 681
BstMAI GTCTC 1 cut(s) 46
BstMBI GATC 6 cut(s) 57, 438, 501, 604, 652, 678
BstMCI CGRYCG 4 cut(s) 264, 454, 598, 1023
BstMWI GCNNNNNNNGC 5 cut(s) 141, 420, 914, 1043, 1046
BstNI CCWGG 2 cut(s) 245, 919
BstNSI RCATGY 2 cut(s) 801, 813
BstSCI CCNGG 5 cut(s) 243, 258, 597, 755, 917
BstSFI CTRYAG 1 cut(s) 1035
BstSLI GKGCMC 1 cut(s) 141
BstUI CGCG 3 cut(s) 39, 345, 450
BstV1I GCAGC 3 cut(s) 530, 1036, 1049
BstV2I GAAGAC 1 cut(s) 841
BstXI CCANNNNNNTGG 2 cut(s) 244, 365
BstZI CGGCCG 2 cut(s) 261, 1020
BsuI GTATCC 1 cut(s) 574
BsuRI GGCC 8 cut(s) 171, 263, 303, 729, 917, 940, 983, 1022
BtgZI GCGATG 1 cut(s) 295
BtsCI GGATG 3 cut(s) 565, 745, 862
BtsI GCAGTG 2 cut(s) 954, 1002
BtsIMutI CAGTG 4 cut(s) 119, 876, 954, 1002
BveI ACCTGC 1 cut(s) 428
Cac8I GCNNGC 1 cut(s) 137
CciI TCATGA 1 cut(s) 60
CfoI GCGC 2 cut(s) 209, 947
Cfr10I RCCGGY 1 cut(s) 453
Cfr13I GGNCC 3 cut(s) 301, 728, 938
CseI GACGC 4 cut(s) 28, 337, 403, 412
Csp6I GTAC 1 cut(s) 487
CviAII CATG 6 cut(s) 11, 61, 67, 73, 798, 810
CviQI GTAC 1 cut(s) 487
DdeI CTNAG 2 cut(s) 839, 879
DinI GGCGCC 1 cut(s) 208
DpnI GATC 6 cut(s) 59, 440, 503, 606, 654, 680
DpnII GATC 6 cut(s) 57, 438, 501, 604, 652, 678
DraI TTTAAA 1 cut(s) 375
EaeI YGGCCR 3 cut(s) 169, 261, 1020
EagI CGGCCG 2 cut(s) 261, 1020
Ecl136II GAGCTC 1 cut(s) 646
EclXI CGGCCG 2 cut(s) 261, 1020
Eco147I AGGCCT 1 cut(s) 917
Eco24I GRGCYC 1 cut(s) 648
Eco52I CGGCCG 2 cut(s) 261, 1020
Eco53kI GAGCTC 1 cut(s) 646
EcoICRI GAGCTC 1 cut(s) 646
EcoNI CCTNNNNNAGG 1 cut(s) 922
EcoO109I RGGNCCY 1 cut(s) 301
EcoRII CCWGG 2 cut(s) 243, 917
EcoT38I GRGCYC 1 cut(s) 648
EgeI GGCGCC 1 cut(s) 208
EheI GGCGCC 1 cut(s) 208
Esp3I CGTCTC 1 cut(s) 46
FaeI CATG 6 cut(s) 14, 64, 70, 76, 801, 813
FaqI GGGAC 3 cut(s) 101, 335, 935
FatI CATG 6 cut(s) 10, 60, 66, 72, 797, 809
FauI CCCGC 2 cut(s) 128, 260
FblI GTMKAC 1 cut(s) 432
Fnu4HI GCNGC 8 cut(s) 37, 133, 346, 544, 1023, 1038, 1047, 1050
FokI GGATG 3 cut(s) 572, 752, 849
FriOI GRGCYC 1 cut(s) 648
Fsp4HI GCNGC 8 cut(s) 37, 133, 346, 544, 1023, 1038, 1047, 1050
FspBI CTAG 2 cut(s) 750, 1060
GlaI GCGC 2 cut(s) 208, 946
GluI GCNGC 8 cut(s) 37, 133, 346, 544, 1023, 1038, 1047, 1050
HaeII RGCGCY 1 cut(s) 210
HaeIII GGCC 8 cut(s) 171, 263, 303, 729, 917, 940, 983, 1022
HgaI GACGC 4 cut(s) 28, 337, 403, 412
HhaI GCGC 2 cut(s) 209, 947
Hin1I GRCGYC 3 cut(s) 207, 348, 414
Hin1II CATG 6 cut(s) 14, 64, 70, 76, 801, 813
Hin6I GCGC 2 cut(s) 207, 945
HinP1I GCGC 2 cut(s) 207, 945
HincII GTYRAC 1 cut(s) 433
HindII GTYRAC 1 cut(s) 433
HinfI GANTC 3 cut(s) 434, 829, 856
HphI GGTGA 5 cut(s) 205, 321, 409, 418, 649
Hpy166II GTNNAC 1 cut(s) 433
Hpy188I TCNGA 5 cut(s) 280, 595, 609, 657, 683
Hpy188III TCNNGA 4 cut(s) 61, 335, 531, 889
Hpy8I GTNNAC 1 cut(s) 433
Hpy99I CGWCG 2 cut(s) 434, 509
HpyAV CCTTC 2 cut(s) 175, 678
HpyCH4III ACNGT 2 cut(s) 123, 430
HpyCH4IV ACGT 2 cut(s) 104, 114
HpyCH4V TGCA 7 cut(s) 87, 289, 580, 801, 862, 1037, 1052
HpyF10VI GCNNNNNNNGC 5 cut(s) 141, 420, 914, 1043, 1046
HpyF3I CTNAG 2 cut(s) 839, 879
HpySE526I ACGT 2 cut(s) 104, 114
Hsp92I GRCGYC 3 cut(s) 207, 348, 414
Hsp92II CATG 6 cut(s) 14, 64, 70, 76, 801, 813
HspAI GCGC 2 cut(s) 207, 945
KasI GGCGCC 1 cut(s) 206
Kpn2I TCCGGA 1 cut(s) 888
Kzo9I GATC 6 cut(s) 57, 438, 501, 604, 652, 678
Lsp1109I GCAGC 3 cut(s) 530, 1036, 1049
LweI GCATC 2 cut(s) 862, 871
MaeI CTAG 2 cut(s) 750, 1060
MaeII ACGT 2 cut(s) 104, 114
MaeIII GTNAC 4 cut(s) 105, 415, 424, 759
MalI GATC 6 cut(s) 59, 440, 503, 606, 654, 680
MboI GATC 6 cut(s) 57, 438, 501, 604, 652, 678
MboII GAAGA 2 cut(s) 838, 846
MfeI CAATTG 1 cut(s) 818
MhlI GDGCHC 2 cut(s) 141, 648
MlsI TGGCCA 1 cut(s) 171
MluCI AATT 4 cut(s) 89, 713, 818, 962
MluNI TGGCCA 1 cut(s) 171
Mly113I GGCGCC 1 cut(s) 207
MlyI GAGTC 2 cut(s) 428, 865
MmeI TCCRAC 3 cut(s) 303, 451, 618
Mox20I TGGCCA 1 cut(s) 171
MroI TCCGGA 1 cut(s) 888
MscI TGGCCA 1 cut(s) 171
MseI TTAA 2 cut(s) 374, 443
MslI CAYNNNNRTG 3 cut(s) 65, 71, 881
Msp20I TGGCCA 1 cut(s) 171
MspR9I CCNGG 5 cut(s) 245, 260, 599, 757, 919
MunI CAATTG 1 cut(s) 818
Mva1269I GAATGC 2 cut(s) 580, 664
MvaI CCWGG 2 cut(s) 245, 919
MvnI CGCG 3 cut(s) 39, 345, 450
MwoI GCNNNNNNNGC 5 cut(s) 141, 420, 914, 1043, 1046
NarI GGCGCC 1 cut(s) 207
NciI CCSGG 3 cut(s) 260, 599, 757
NdeII GATC 6 cut(s) 57, 438, 501, 604, 652, 678
NlaIII CATG 6 cut(s) 14, 64, 70, 76, 801, 813
NlaIV GGNNCC 3 cut(s) 208, 939, 1017
NmuCI GTSAC 2 cut(s) 415, 424
NspI RCATGY 2 cut(s) 801, 813
NspV TTCGAA 1 cut(s) 832
OliI CACNNNNGTG 1 cut(s) 881
PagI TCATGA 1 cut(s) 60
PaqCI CACCTGC 1 cut(s) 428
PceI AGGCCT 1 cut(s) 917
PcsI WCGNNNNNNNCGW 1 cut(s) 510
PctI GAATGC 2 cut(s) 580, 664
PfeI GAWTC 1 cut(s) 829
PflFI GACNNNGTC 1 cut(s) 599
PkrI GCNGC 8 cut(s) 38, 134, 347, 545, 1024, 1039, 1048, 1051
PleI GAGTC 2 cut(s) 428, 864
PluTI GGCGCC 1 cut(s) 210
PpsI GAGTC 2 cut(s) 428, 864
Psp124BI GAGCTC 1 cut(s) 648
Psp6I CCWGG 2 cut(s) 243, 917
PspGI CCWGG 2 cut(s) 243, 917
PspN4I GGNNCC 3 cut(s) 208, 939, 1017
PspPI GGNCC 3 cut(s) 301, 728, 938
PstI CTGCAG 1 cut(s) 1039
PsyI GACNNNGTC 1 cut(s) 599
RsaI GTAC 1 cut(s) 488
RsaNI GTAC 1 cut(s) 487
RseI CAYNNNNRTG 3 cut(s) 65, 71, 881
SacI GAGCTC 1 cut(s) 648
SalI GTCGAC 1 cut(s) 431
SaqAI TTAA 2 cut(s) 374, 443
SatI GCNGC 8 cut(s) 37, 133, 346, 544, 1023, 1038, 1047, 1050
Sau3AI GATC 6 cut(s) 57, 438, 501, 604, 652, 678
Sau96I GGNCC 3 cut(s) 301, 728, 938
SchI GAGTC 2 cut(s) 428, 865
ScrFI CCNGG 5 cut(s) 245, 260, 599, 757, 919
SduI GDGCHC 2 cut(s) 141, 648
SfaNI GCATC 2 cut(s) 862, 871
SfcI CTRYAG 1 cut(s) 1035
SfoI GGCGCC 1 cut(s) 208
SfuI TTCGAA 1 cut(s) 832
SmiMI CAYNNNNRTG 3 cut(s) 65, 71, 881
SmlI CTYRAG 1 cut(s) 333
SmoI CTYRAG 1 cut(s) 333
Sse9I AATT 4 cut(s) 89, 713, 818, 962
SseBI AGGCCT 1 cut(s) 917
SspDI GGCGCC 1 cut(s) 206
SspMI CTAG 2 cut(s) 750, 1060
SstI GAGCTC 1 cut(s) 648
StuI AGGCCT 1 cut(s) 917
StyD4I CCNGG 5 cut(s) 243, 258, 597, 755, 917
TaaI ACNGT 2 cut(s) 123, 430
TaiI ACGT 2 cut(s) 107, 117
TaqI TCGA 7 cut(s) 240, 432, 437, 479, 504, 603, 832
TasI AATT 4 cut(s) 89, 713, 818, 962
TauI GCSGC 5 cut(s) 39, 135, 348, 1025, 1049
TfiI GAWTC 1 cut(s) 829
Tru1I TTAA 2 cut(s) 374, 443
Tru9I TTAA 2 cut(s) 374, 443
TscAI CASTG 4 cut(s) 126, 883, 954, 1009
TseFI GTSAC 2 cut(s) 415, 424
TseI GCWGC 3 cut(s) 543, 1037, 1049
Tsp45I GTSAC 2 cut(s) 415, 424
TspDTI ATGAA 4 cut(s) 7, 83, 726, 795
TspRI CASTG 4 cut(s) 126, 883, 954, 1009
Tth111I GACNNNGTC 1 cut(s) 599
XagI CCTNNNNNAGG 1 cut(s) 922
XapI RAATTY 1 cut(s) 713
XceI RCATGY 2 cut(s) 801, 813
XcmI CCANNNNNNNNNTGG 1 cut(s) 362
XmiI GTMKAC 1 cut(s) 432
XspI CTAG 2 cut(s) 750, 1060
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.