RchiOBHm_Chr6g0291431

Adenylate isopentenyltransferase 3

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Forward (+)
54581815 .. 54582855
1041 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26148

Sequence Viewer

Length: 1041 bp
ATGTTTCTTTTCTTACTTTGTTTGGTATCTTTGTTGCAGATCATGACCATCAACATGATGACAATGTGCAAACAAACACAGACGTTACCAAACGTACCACTGTCCATTGGCGGCGGGCACAGCCACAACCTCCTCGATGTGTTGAATGTCCACCGCCAGAAGGATAAGGTGGTGATCGTAATGGGCGCCACCGGGACGGGCAAGTCAAAGCTCTCCATCGACCTGGCCACCCGCTTCCCGGCCGAAATCATCAACTCGGACAAAATGCAACTCTACGAGGGCCTTGACATCGCCACCAACAAAATATCACCTCAAGCACAACGCGGCGTCCCCCACCATTTGCTTGGAGTTTTAGACCCCAATGCGGATTTCTCTGCCGACGACTTCTGTGGGGTCACCTGCCTCGCCGTCGAGTCGATCTTAGACCGTGACCGGCTTCCAATCATCGTTGGAGGCTCGAACTCATACATAGAGGCGTTGATCGACGGCTACGATAAGATGTTCCGGTCAAGATATGACTGCTGCTTTCTCTGGGTGGATGTATCCTTACCCGTTTTGCAATCTTTTGTTTCCGACCGGGTCGATCAGATGGTGGAGAACGGAATGGTGGAGGAGGTGAGACAGTTCTTTGATCCGAATGCGGATTATACAAAAGGGATCAGAAGGGCTATCGGTGTGCCGGAGTTTGATGACTTTTTCCGGAATGGTCCGTCTTTGGATGAGGAAACTAGAGCCTTGTTACTTGAACAAGCGATAATTCAAGTAAAAGACAATACATGCAAGTTGGCATGTAGGCAATTGGAGAAGATTCGAAGACTTAGGAATAAAGGGTGGAGTCTGCATCCACTTGATGCCACTGAGGTGTACCGGAAGCGTGGCAAGGAGGCTGATGAGGCCTGGGACAGGCTGGTTTCGGGGCCAAGCTCAGTGATTGTTCGCCAATTTATTTACAATGTCAAGGCCGAAGTTCCCACAAATCTCACTGCCATCAGGGTTCCGGCCGCAATGGAAACTGCAGCTCTTGCGGCTGCAACTTACTAG

Protein Analysis

346

Amino Acids

38.67

Weight (kDa)

5.76

Isoelectric Point (pI)

35.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IPT PF01745 56 - 199 3.8e-06 Isopentenyl transferase
IPPT PF01715 90 - 166 9.9e-22 IPP transferase
IPPT PF01715 170 - 271 2.4e-13 IPP transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 407
AasI GACNNNNNNGTC 1 cut(s) 202
Acc36I ACCTGC 1 cut(s) 407
AccB1I GGYRCC 1 cut(s) 185
AccII CGCG 1 cut(s) 324
AccIII TCCGGA 1 cut(s) 699
AciI CCGC 9 cut(s) 111, 114, 154, 232, 324, 365, 641, 1002, 1025
AclWI GGATC 2 cut(s) 626, 665
AcoI YGGCCR 3 cut(s) 225, 240, 999
AcyI GRCGYC 2 cut(s) 186, 327
AfaI GTAC 2 cut(s) 96, 866
AfiI CCNNNNNNNGG 4 cut(s) 160, 238, 364, 903
AgsI TTSAA 3 cut(s) 145, 746, 761
AjnI CCWGG 2 cut(s) 222, 896
AjuI GAANNNNNNNTTGG 2 cut(s) 353, 385
AleI CACNNNNGTG 1 cut(s) 860
AluBI AGCT 3 cut(s) 211, 924, 1019
AluI AGCT 3 cut(s) 211, 924, 1019
Alw26I GTCTC 1 cut(s) 613
AlwI GGATC 2 cut(s) 626, 665
Aor13HI TCCGGA 1 cut(s) 699
AoxI GGCC 7 cut(s) 225, 240, 280, 894, 917, 960, 999
ApeKI GCWGC 3 cut(s) 522, 1016, 1028
AspLEI GCGC 1 cut(s) 188
AspS9I GGNCC 3 cut(s) 280, 707, 917
AsuC2I CCSGG 3 cut(s) 193, 239, 578
AsuHPI GGTGA 4 cut(s) 184, 300, 388, 628
AsuII TTCGAA 1 cut(s) 811
AvaII GGWCC 1 cut(s) 707
BaeGI GKGCMC 1 cut(s) 120
BalI TGGCCA 1 cut(s) 227
BanI GGYRCC 1 cut(s) 185
BbsI GAAGAC 1 cut(s) 820
BbvI GCAGC 3 cut(s) 509, 1015, 1028
BccI CCATC 4 cut(s) 56, 224, 583, 995
BceAI ACGGC 2 cut(s) 392, 502
BciT130I CCWGG 2 cut(s) 224, 898
BciVI GTATCC 1 cut(s) 553
BcnI CCSGG 3 cut(s) 193, 239, 578
BcoDI GTCTC 1 cut(s) 613
BfaI CTAG 2 cut(s) 729, 1039
BfmI CTRYAG 1 cut(s) 1014
BfoI RGCGCY 1 cut(s) 189
BfuAI ACCTGC 1 cut(s) 407
BfuI GTATCC 1 cut(s) 553
BisI GCNGC 7 cut(s) 112, 325, 523, 1002, 1017, 1026, 1029
BlsI GCNGC 7 cut(s) 113, 326, 524, 1003, 1018, 1027, 1030
Bme1390I CCNGG 5 cut(s) 193, 224, 239, 578, 898
Bme18I GGWCC 1 cut(s) 707
BmgT120I GGNCC 3 cut(s) 280, 707, 917
BmiI GGNNCC 3 cut(s) 187, 918, 996
BmrFI CCNGG 5 cut(s) 193, 224, 239, 578, 898
BmsI GCATC 2 cut(s) 841, 850
BpiI GAAGAC 1 cut(s) 820
Bpu14I TTCGAA 1 cut(s) 811
BpuEI CTTGAG 1 cut(s) 297
BpuMI CCSGG 3 cut(s) 193, 239, 578
BsaHI GRCGYC 2 cut(s) 186, 327
BsaJI CCNNGG 1 cut(s) 897
BsaWI WCCGGW 3 cut(s) 504, 699, 867
Bsc4I CCNNNNNNNGG 4 cut(s) 160, 238, 364, 903
Bse118I RCCGGY 1 cut(s) 432
Bse3DI GCAATG 1 cut(s) 1011
BseAI TCCGGA 1 cut(s) 699
BseBI CCWGG 2 cut(s) 224, 898
BseDI CCNNGG 1 cut(s) 897
BseGI GGATG 3 cut(s) 544, 724, 841
BseLI CCNNNNNNNGG 4 cut(s) 160, 238, 364, 903
BseMI GCAATG 1 cut(s) 1011
BseMII CTCAG 2 cut(s) 849, 939
BseRI GAGGAG 2 cut(s) 122, 626
BseSI GKGCMC 1 cut(s) 120
BseX3I CGGCCG 2 cut(s) 240, 999
BseXI GCAGC 3 cut(s) 509, 1015, 1028
Bsh1236I CGCG 1 cut(s) 324
Bsh1285I CGRYCG 3 cut(s) 243, 577, 1002
BshFI GGCC 7 cut(s) 227, 242, 282, 896, 919, 962, 1001
BshNI GGYRCC 1 cut(s) 185
BsiEI CGRYCG 3 cut(s) 243, 577, 1002
BsiSI CCGG 9 cut(s) 192, 239, 433, 505, 577, 680, 700, 868, 998
BslFI GGGAC 3 cut(s) 208, 314, 914
BslI CCNNNNNNNGG 4 cut(s) 160, 238, 364, 903
BsmAI GTCTC 1 cut(s) 613
BsmFI GGGAC 3 cut(s) 208, 314, 914
BsmI GAATGC 1 cut(s) 643
BsnI GGCC 7 cut(s) 227, 242, 282, 896, 919, 962, 1001
Bsp119I TTCGAA 1 cut(s) 811
Bsp1286I GDGCHC 1 cut(s) 120
Bsp13I TCCGGA 1 cut(s) 699
Bsp143I GATC 7 cut(s) 39, 174, 417, 480, 583, 631, 657
BspACI CCGC 9 cut(s) 111, 114, 154, 232, 324, 365, 641, 1002, 1025
BspANI GGCC 7 cut(s) 227, 242, 282, 896, 919, 962, 1001
BspCNI CTCAG 2 cut(s) 850, 938
BspEI TCCGGA 1 cut(s) 699
BspFNI CGCG 1 cut(s) 324
BspHI TCATGA 1 cut(s) 42
BspLI GGNNCC 3 cut(s) 187, 918, 996
BspMAI CTGCAG 1 cut(s) 1018
BspMI ACCTGC 1 cut(s) 407
BspPI GGATC 2 cut(s) 626, 665
BspT104I TTCGAA 1 cut(s) 811
BspT107I GGYRCC 1 cut(s) 185
BsrDI GCAATG 1 cut(s) 1011
BsrFI RCCGGY 1 cut(s) 432
BssAI RCCGGY 1 cut(s) 432
BssECI CCNNGG 1 cut(s) 897
BssMI GATC 7 cut(s) 39, 174, 417, 480, 583, 631, 657
BssNI GRCGYC 2 cut(s) 186, 327
Bst2UI CCWGG 2 cut(s) 224, 898
Bst4CI ACNGT 3 cut(s) 102, 428, 624
BstACI GRCGYC 2 cut(s) 186, 327
BstAPI GCANNNNNTGC 1 cut(s) 1022
BstBI TTCGAA 1 cut(s) 811
BstC8I GCNNGC 1 cut(s) 116
BstDEI CTNAG 4 cut(s) 421, 818, 858, 925
BstEII GGTNACC 1 cut(s) 394
BstENI CCTNNNNNAGG 1 cut(s) 901
BstF5I GGATG 3 cut(s) 544, 724, 841
BstFNI CGCG 1 cut(s) 324
BstH2I RGCGCY 1 cut(s) 189
BstHHI GCGC 1 cut(s) 188
BstKTI GATC 7 cut(s) 42, 177, 420, 483, 586, 634, 660
BstMAI GTCTC 1 cut(s) 613
BstMBI GATC 7 cut(s) 39, 174, 417, 480, 583, 631, 657
BstMCI CGRYCG 3 cut(s) 243, 577, 1002
BstMWI GCNNNNNNNGC 4 cut(s) 120, 893, 1022, 1025
BstNI CCWGG 2 cut(s) 224, 898
BstNSI RCATGY 2 cut(s) 780, 792
BstPI GGTNACC 1 cut(s) 394
BstSCI CCNGG 5 cut(s) 191, 222, 237, 576, 896
BstSFI CTRYAG 1 cut(s) 1014
BstSLI GKGCMC 1 cut(s) 120
BstUI CGCG 1 cut(s) 324
BstV1I GCAGC 3 cut(s) 509, 1015, 1028
BstV2I GAAGAC 1 cut(s) 820
BstXI CCANNNNNNTGG 2 cut(s) 223, 344
BstZI CGGCCG 2 cut(s) 240, 999
BsuI GTATCC 1 cut(s) 553
BsuRI GGCC 7 cut(s) 227, 242, 282, 896, 919, 962, 1001
BtgZI GCGATG 1 cut(s) 274
BtsCI GGATG 3 cut(s) 544, 724, 841
BtsI GCAGTG 1 cut(s) 981
BtsIMutI CAGTG 4 cut(s) 98, 855, 933, 981
BveI ACCTGC 1 cut(s) 407
Cac8I GCNNGC 1 cut(s) 116
CciI TCATGA 1 cut(s) 42
CfoI GCGC 1 cut(s) 188
Cfr10I RCCGGY 1 cut(s) 432
Cfr13I GGNCC 3 cut(s) 280, 707, 917
CseI GACGC 1 cut(s) 316
Csp6I GTAC 2 cut(s) 95, 865
CviAII CATG 4 cut(s) 43, 55, 777, 789
CviQI GTAC 2 cut(s) 95, 865
DdeI CTNAG 4 cut(s) 421, 818, 858, 925
DinI GGCGCC 1 cut(s) 187
DpnI GATC 7 cut(s) 41, 176, 419, 482, 585, 633, 659
DpnII GATC 7 cut(s) 39, 174, 417, 480, 583, 631, 657
DrdI GACNNNNNNGTC 1 cut(s) 202
DseDI GACNNNNNNGTC 1 cut(s) 202
EaeI YGGCCR 3 cut(s) 225, 240, 999
EagI CGGCCG 2 cut(s) 240, 999
EclXI CGGCCG 2 cut(s) 240, 999
Eco147I AGGCCT 1 cut(s) 896
Eco47I GGWCC 1 cut(s) 707
Eco52I CGGCCG 2 cut(s) 240, 999
Eco91I GGTNACC 1 cut(s) 394
EcoNI CCTNNNNNAGG 1 cut(s) 901
EcoO109I RGGNCCY 1 cut(s) 280
EcoO65I GGTNACC 1 cut(s) 394
EcoRII CCWGG 2 cut(s) 222, 896
EgeI GGCGCC 1 cut(s) 187
EheI GGCGCC 1 cut(s) 187
FaeI CATG 4 cut(s) 46, 58, 780, 792
FaiI YATR 8 cut(s) 44, 56, 466, 470, 516, 648, 778, 790
FaqI GGGAC 3 cut(s) 208, 314, 914
FatI CATG 4 cut(s) 42, 54, 776, 788
FauI CCCGC 2 cut(s) 107, 239
Fnu4HI GCNGC 7 cut(s) 112, 325, 523, 1002, 1017, 1026, 1029
FokI GGATG 3 cut(s) 551, 731, 828
Fsp4HI GCNGC 7 cut(s) 112, 325, 523, 1002, 1017, 1026, 1029
FspBI CTAG 2 cut(s) 729, 1039
GlaI GCGC 1 cut(s) 187
GluI GCNGC 7 cut(s) 112, 325, 523, 1002, 1017, 1026, 1029
HaeII RGCGCY 1 cut(s) 189
HaeIII GGCC 7 cut(s) 227, 242, 282, 896, 919, 962, 1001
HapII CCGG 9 cut(s) 192, 239, 433, 505, 577, 680, 700, 868, 998
HgaI GACGC 1 cut(s) 316
HhaI GCGC 1 cut(s) 188
Hin1I GRCGYC 2 cut(s) 186, 327
Hin1II CATG 4 cut(s) 46, 58, 780, 792
Hin6I GCGC 1 cut(s) 186
HinP1I GCGC 1 cut(s) 186
HinfI GANTC 3 cut(s) 413, 808, 835
HpaII CCGG 9 cut(s) 192, 239, 433, 505, 577, 680, 700, 868, 998
HphI GGTGA 4 cut(s) 184, 300, 388, 628
Hpy166II GTNNAC 2 cut(s) 151, 865
Hpy188I TCNGA 5 cut(s) 259, 574, 588, 636, 662
Hpy188III TCNNGA 3 cut(s) 43, 510, 700
Hpy8I GTNNAC 2 cut(s) 151, 865
Hpy99I CGWCG 3 cut(s) 383, 413, 488
HpyAV CCTTC 2 cut(s) 154, 657
HpyCH4III ACNGT 3 cut(s) 102, 428, 624
HpyCH4IV ACGT 2 cut(s) 83, 93
HpyCH4V TGCA 8 cut(s) 37, 69, 268, 559, 780, 841, 1016, 1031
HpyF10VI GCNNNNNNNGC 4 cut(s) 120, 893, 1022, 1025
HpyF3I CTNAG 4 cut(s) 421, 818, 858, 925
HpySE526I ACGT 2 cut(s) 83, 93
Hsp92I GRCGYC 2 cut(s) 186, 327
Hsp92II CATG 4 cut(s) 46, 58, 780, 792
HspAI GCGC 1 cut(s) 186
KasI GGCGCC 1 cut(s) 185
Kpn2I TCCGGA 1 cut(s) 699
Kzo9I GATC 7 cut(s) 39, 174, 417, 480, 583, 631, 657
Lsp1109I GCAGC 3 cut(s) 509, 1015, 1028
LweI GCATC 2 cut(s) 841, 850
MaeI CTAG 2 cut(s) 729, 1039
MaeII ACGT 2 cut(s) 83, 93
MaeIII GTNAC 4 cut(s) 84, 394, 428, 738
MalI GATC 7 cut(s) 41, 176, 419, 482, 585, 633, 659
MboI GATC 7 cut(s) 39, 174, 417, 480, 583, 631, 657
MboII GAAGA 2 cut(s) 817, 825
MfeI CAATTG 1 cut(s) 797
MhlI GDGCHC 1 cut(s) 120
MlsI TGGCCA 1 cut(s) 227
MluCI AATT 3 cut(s) 756, 797, 941
MluNI TGGCCA 1 cut(s) 227
Mly113I GGCGCC 1 cut(s) 186
MlyI GAGTC 2 cut(s) 422, 844
MmeI TCCRAC 2 cut(s) 430, 597
Mox20I TGGCCA 1 cut(s) 227
MroI TCCGGA 1 cut(s) 699
MscI TGGCCA 1 cut(s) 227
MslI CAYNNNNRTG 2 cut(s) 53, 860
Msp20I TGGCCA 1 cut(s) 227
MspI CCGG 9 cut(s) 192, 239, 433, 505, 577, 680, 700, 868, 998
MspR9I CCNGG 5 cut(s) 193, 224, 239, 578, 898
MunI CAATTG 1 cut(s) 797
Mva1269I GAATGC 1 cut(s) 643
MvaI CCWGG 2 cut(s) 224, 898
MvnI CGCG 1 cut(s) 324
MwoI GCNNNNNNNGC 4 cut(s) 120, 893, 1022, 1025
NarI GGCGCC 1 cut(s) 186
NciI CCSGG 3 cut(s) 193, 239, 578
NdeII GATC 7 cut(s) 39, 174, 417, 480, 583, 631, 657
NlaIII CATG 4 cut(s) 46, 58, 780, 792
NlaIV GGNNCC 3 cut(s) 187, 918, 996
NmuCI GTSAC 2 cut(s) 394, 428
NspI RCATGY 2 cut(s) 780, 792
NspV TTCGAA 1 cut(s) 811
OliI CACNNNNGTG 1 cut(s) 860
PagI TCATGA 1 cut(s) 42
PaqCI CACCTGC 1 cut(s) 407
PceI AGGCCT 1 cut(s) 896
PcsI WCGNNNNNNNCGW 1 cut(s) 489
PctI GAATGC 1 cut(s) 643
PfeI GAWTC 1 cut(s) 808
PflFI GACNNNGTC 1 cut(s) 578
PkrI GCNGC 7 cut(s) 113, 326, 524, 1003, 1018, 1027, 1030
PleI GAGTC 2 cut(s) 421, 843
PluTI GGCGCC 1 cut(s) 189
PpsI GAGTC 2 cut(s) 421, 843
Psp6I CCWGG 2 cut(s) 222, 896
PspEI GGTNACC 1 cut(s) 394
PspGI CCWGG 2 cut(s) 222, 896
PspN4I GGNNCC 3 cut(s) 187, 918, 996
PspPI GGNCC 3 cut(s) 280, 707, 917
PstI CTGCAG 1 cut(s) 1018
PsyI GACNNNGTC 1 cut(s) 578
RsaI GTAC 2 cut(s) 96, 866
RsaNI GTAC 2 cut(s) 95, 865
RseI CAYNNNNRTG 2 cut(s) 53, 860
SatI GCNGC 7 cut(s) 112, 325, 523, 1002, 1017, 1026, 1029
Sau3AI GATC 7 cut(s) 39, 174, 417, 480, 583, 631, 657
Sau96I GGNCC 3 cut(s) 280, 707, 917
SchI GAGTC 2 cut(s) 422, 844
ScrFI CCNGG 5 cut(s) 193, 224, 239, 578, 898
SduI GDGCHC 1 cut(s) 120
SfaNI GCATC 2 cut(s) 841, 850
SfcI CTRYAG 1 cut(s) 1014
SfoI GGCGCC 1 cut(s) 187
SfuI TTCGAA 1 cut(s) 811
SinI GGWCC 1 cut(s) 707
SmiMI CAYNNNNRTG 2 cut(s) 53, 860
SmlI CTYRAG 1 cut(s) 312
SmoI CTYRAG 1 cut(s) 312
Sse9I AATT 3 cut(s) 756, 797, 941
SseBI AGGCCT 1 cut(s) 896
SsiI CCGC 9 cut(s) 111, 114, 154, 232, 324, 365, 641, 1002, 1025
SspDI GGCGCC 1 cut(s) 185
SspMI CTAG 2 cut(s) 729, 1039
StuI AGGCCT 1 cut(s) 896
StyD4I CCNGG 5 cut(s) 191, 222, 237, 576, 896
TaaI ACNGT 3 cut(s) 102, 428, 624
TaiI ACGT 2 cut(s) 86, 96
TaqI TCGA 8 cut(s) 135, 219, 411, 416, 458, 483, 582, 811
TasI AATT 3 cut(s) 756, 797, 941
TauI GCSGC 4 cut(s) 114, 327, 1004, 1028
TfiI GAWTC 1 cut(s) 808
TscAI CASTG 4 cut(s) 105, 862, 933, 988
TseFI GTSAC 2 cut(s) 394, 428
TseI GCWGC 3 cut(s) 522, 1016, 1028
Tsp45I GTSAC 2 cut(s) 394, 428
TspGWI ACGGA 2 cut(s) 615, 699
TspRI CASTG 4 cut(s) 105, 862, 933, 988
Tth111I GACNNNGTC 1 cut(s) 578
VpaK11BI GGWCC 1 cut(s) 707
XagI CCTNNNNNAGG 1 cut(s) 901
XceI RCATGY 2 cut(s) 780, 792
XcmI CCANNNNNNNNNTGG 1 cut(s) 341
XspI CTAG 2 cut(s) 729, 1039
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.