AT4G01245
ERF Family

negative regulation of interferon-beta production

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
527591 .. 528144
554 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G01245.1

Sequence Viewer

Length: 357 bp
ATGGTGATTCACCTTAGTTCATCTTGTTATTCCTGCAGAGTAGAGTACTTTGTTCGGTTTCTAGTCTCTTACAACAACTTGTTAAACTACGCAATTTCGAGTTATAAGGAATTGCTAGCCAAGTGCAATCAGCTGGGTAGAGGCGAAGCACAATCTTCTGAGAAACTTGAAAAAGCTTTGGAAAAGATAGAAAAACTAAAGAAACGAATGAGGGAACTTGAGTTGATAACTGAAGAGAACAGAGCTATACGGGACATAAACGTTTCAAAGAAATGCAGTTACACAGAAGTTTCCCTTAAAAGACCCGACATCGTCAATGTCACCTTACAGCAATGGTACTTTTGTTGTACATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

118

Amino Acids

13.83

Weight (kDa)

8.9

Isoelectric Point (pI)

45.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 105
AclI AACGTT 1 cut(s) 261
AcuI CTGAAG 1 cut(s) 252
AfaI GTAC 3 cut(s) 47, 338, 349
AgsI TTSAA 2 cut(s) 170, 267
AluBI AGCT 3 cut(s) 133, 176, 245
AluI AGCT 3 cut(s) 133, 176, 245
Alw26I GTCTC 1 cut(s) 70
AsuHPI GGTGA 2 cut(s) 16, 313
AsuNHI GCTAGC 1 cut(s) 115
BaeI ACNNNNGTAYC 1 cut(s) 328
BcoDI GTCTC 1 cut(s) 70
BfaI CTAG 2 cut(s) 62, 116
BfmI CTRYAG 1 cut(s) 34
BmcAI AGTACT 1 cut(s) 47
BmtI GCTAGC 1 cut(s) 119
BpuEI CTTGAG 1 cut(s) 239
Bse3DI GCAATG 1 cut(s) 338
BseMI GCAATG 1 cut(s) 338
BseMII CTCAG 1 cut(s) 150
BseYI CCCAGC 1 cut(s) 133
BslFI GGGAC 1 cut(s) 266
BsmAI GTCTC 1 cut(s) 70
BsmFI GGGAC 1 cut(s) 266
Bsp1407I TGTACA 1 cut(s) 347
BspCNI CTCAG 1 cut(s) 151
BspHI TCATGA 1 cut(s) 353
BspMAI CTGCAG 1 cut(s) 38
BspOI GCTAGC 1 cut(s) 119
BsrDI GCAATG 1 cut(s) 338
BsrGI TGTACA 1 cut(s) 347
Bst6I CTCTTC 1 cut(s) 228
BstAUI TGTACA 1 cut(s) 347
BstC8I GCNNGC 1 cut(s) 117
BstDEI CTNAG 2 cut(s) 14, 159
BstMAI GTCTC 1 cut(s) 70
BstSFI CTRYAG 1 cut(s) 34
Cac8I GCNNGC 1 cut(s) 117
CciI TCATGA 1 cut(s) 353
Csp6I GTAC 3 cut(s) 46, 337, 348
CviAII CATG 1 cut(s) 354
CviJI RGCY 4 cut(s) 119, 133, 176, 245
CviKI_1 RGCY 4 cut(s) 119, 133, 176, 245
CviQI GTAC 3 cut(s) 46, 337, 348
DdeI CTNAG 2 cut(s) 14, 159
Eam1104I CTCTTC 1 cut(s) 228
EarI CTCTTC 1 cut(s) 228
Eco57I CTGAAG 1 cut(s) 252
FaeI CATG 1 cut(s) 357
FaiI YATR 4 cut(s) 105, 248, 257, 355
FalI AAGNNNNNCTT 2 cut(s) 279, 311
FaqI GGGAC 1 cut(s) 266
FatI CATG 1 cut(s) 353
FspBI CTAG 2 cut(s) 62, 116
GsaI CCCAGC 1 cut(s) 137
Hin1II CATG 1 cut(s) 357
HindIII AAGCTT 1 cut(s) 174
HinfI GANTC 1 cut(s) 7
HphI GGTGA 2 cut(s) 16, 313
Hpy188I TCNGA 1 cut(s) 160
Hpy188III TCNNGA 1 cut(s) 354
HpyCH4IV ACGT 1 cut(s) 261
HpyCH4V TGCA 3 cut(s) 36, 126, 276
HpyF3I CTNAG 2 cut(s) 14, 159
HpySE526I ACGT 1 cut(s) 261
Hsp92II CATG 1 cut(s) 357
LpnPI CCDG 2 cut(s) 46, 119
MaeI CTAG 2 cut(s) 62, 116
MaeII ACGT 1 cut(s) 261
MaeIII GTNAC 2 cut(s) 278, 319
MboII GAAGA 2 cut(s) 147, 245
MluCI AATT 2 cut(s) 93, 110
MnlI CCTC 2 cut(s) 134, 204
MseI TTAA 2 cut(s) 83, 297
MspA1I CMGCKG 1 cut(s) 133
NheI GCTAGC 1 cut(s) 115
NlaIII CATG 1 cut(s) 357
NmuCI GTSAC 1 cut(s) 319
PagI TCATGA 1 cut(s) 353
PfeI GAWTC 1 cut(s) 7
PflFI GACNNNGTC 1 cut(s) 311
PsiI TTATAA 1 cut(s) 105
Psp1406I AACGTT 1 cut(s) 261
PspFI CCCAGC 1 cut(s) 133
PstI CTGCAG 1 cut(s) 38
PsyI GACNNNGTC 1 cut(s) 311
PvuII CAGCTG 1 cut(s) 133
RsaI GTAC 3 cut(s) 47, 338, 349
RsaNI GTAC 3 cut(s) 46, 337, 348
SaqAI TTAA 2 cut(s) 83, 297
ScaI AGTACT 1 cut(s) 47
SetI ASST 6 cut(s) 15, 135, 178, 247, 264, 326
SfcI CTRYAG 1 cut(s) 34
SmlI CTYRAG 1 cut(s) 218
SmoI CTYRAG 1 cut(s) 218
Sse9I AATT 2 cut(s) 93, 110
SspMI CTAG 2 cut(s) 62, 116
TaiI ACGT 1 cut(s) 264
TaqI TCGA 1 cut(s) 98
TasI AATT 2 cut(s) 93, 110
TatI WGTACW 2 cut(s) 45, 347
TfiI GAWTC 1 cut(s) 7
Tru1I TTAA 2 cut(s) 83, 297
Tru9I TTAA 2 cut(s) 83, 297
TseFI GTSAC 1 cut(s) 319
Tsp45I GTSAC 1 cut(s) 319
TspDTI ATGAA 1 cut(s) 9
Tth111I GACNNNGTC 1 cut(s) 311
XspI CTAG 2 cut(s) 62, 116
ZrmI AGTACT 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.