Rh2DG236300

Ring finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0001668
Physical Location & Seq
Forward (+)
23554692 .. 23560392
5701 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG236300.1

Sequence Viewer

Length: 1218 bp
ATGGTCAATTGCGACCACCACCACGACTCTAGCTTCAGCAAAGCCATCTGCTCAATCTGCCACAAAGACCTCGAGCCCTTCCTCGAGGACCTCCAAGCCATCTTCATCTGCGGCCACGTCTTCCACGAGTTCTGCTTGCAAGAGTCCTTCGGCTTCTTTGAGAGCGTCAAGAGGTACAGCTGTCCGGTGTGCAAACAGCGATGCAAGCCGAACGACGTCGCTCGGCTCTATTTCGAGTCGGTGGGCATCTCGCCGGAGCCGCCGAGTTTGACTCGGTCGCCGATTGGGGAAGATTCCGAGGCATTGCATCGTGAGGTCAAAGAGCTTAAAGAGGAGCTTTATTTATGCAAGGAGCAAGCGAAGAAAGAAGTGGCTAATTTAAAGATTGAAGCTCTGAAACAACAAGCATCTATACGACAGATGCTTCATATGAAAACTGAGGCACTTGATAAATTGACTGTGGAGTGCTTGCGGCTGCAAGAAAGAAATAGGGCACTGACCAAAGAACTTGCAGCTTTCAAATTGGCATCTGATCTAGATCTCGATGAAAAGGAGATTTTGAACCTTGCCGCACTTGGTAATGGGGGAAACAATGAAAACACAATAGATGTTCTTAGAAAATCTTTGATTATGAGTAATAGGAATCGCAAAGAACTGATTGCCCAGCATATTCTTCTTGAACGAGGAGAGGCTCTTCACCGTAAAAAACTAGAGAAGGCTAAAGGAAAGATAAATAGATTAAATACAAAGGTACAGGAATTGGCAGACCAGTGCAATCTTCTTGAACGAGGTGAGGCTCGTTGTAGTAGAAAGCTAGAGAAGGCTAAAGGAAAGATAAACAAATTGAAGACAAAGGTACAGAAACTGAAGGACCAATGCAATCTTCTTGAACAAGGTGAGGCTCGTTACAGTAGAAAGATAGAGAAGGCTAAAGGGAAGATAAATACATTGAAGGCAAGGGTACAAGAATTTGATGGTGCTGTTGAAGTAAGGAAAGAAACTTCAGTCCTTGGACCAAGCGATCTGTTTGAGAGTATGGTTCCTGTGAGTGGTACCTCTAATGATACTGCCAAAGCTCCTACTGATGATGTTGCAGATGTTCTGATCCTTGACGATGTTAAACAGGTACAATCCATGCTTAACATTACAAAGGAATCTCCAATCACCCAGCCACTTGCCAGACCAGGTATATTATCGGCACCTTTGAGTTTCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00053 ko01100 map00053 map01100
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

405

Amino Acids

45.67

Weight (kDa)

8.55

Isoelectric Point (pI)

42.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 219
AbsI CCTCGAGG 1 cut(s) 83
Acc65I GGTACC 1 cut(s) 1052
AccB1I GGYRCC 2 cut(s) 1052, 1198
AciI CCGC 4 cut(s) 111, 260, 472, 570
AclWI GGATC 1 cut(s) 1099
AcoI YGGCCR 1 cut(s) 112
AcsI RAATTY 1 cut(s) 968
AcuI CTGAAG 3 cut(s) 19, 887, 987
AcyI GRCGYC 1 cut(s) 216
AfaI GTAC 6 cut(s) 176, 753, 858, 963, 1054, 1128
AfiI CCNNNNNNNGG 1 cut(s) 1049
AjiI CACGTC 1 cut(s) 118
AjnI CCWGG 1 cut(s) 1183
AjuI GAANNNNNNNTTGG 2 cut(s) 867, 899
AluBI AGCT 8 cut(s) 33, 180, 325, 337, 392, 515, 814, 1076
AluI AGCT 8 cut(s) 33, 180, 325, 337, 392, 515, 814, 1076
AlwI GGATC 1 cut(s) 1099
AlwNI CAGNNNCTG 1 cut(s) 865
Ama87I CYCGRG 2 cut(s) 71, 83
AoxI GGCC 1 cut(s) 112
ApeKI GCWGC 2 cut(s) 475, 512
ApoI RAATTY 1 cut(s) 968
Asp718I GGTACC 1 cut(s) 1052
AspS9I GGNCC 3 cut(s) 88, 871, 1013
AsuHPI GGTGA 4 cut(s) 689, 803, 908, 1156
AvaI CYCGRG 2 cut(s) 71, 83
AvaII GGWCC 3 cut(s) 88, 871, 1013
BaeGI GKGCMC 1 cut(s) 496
BaeI ACNNNNGTAYC 2 cut(s) 166, 199
BanI GGYRCC 2 cut(s) 1052, 1198
BanII GRGCYC 1 cut(s) 78
BauI CACGAG 1 cut(s) 125
BbsI GAAGAC 2 cut(s) 112, 854
BbvI GCAGC 2 cut(s) 462, 524
BccI CCATC 3 cut(s) 53, 107, 968
BciT130I CCWGG 1 cut(s) 1185
BfaI CTAG 4 cut(s) 30, 536, 710, 815
BglII AGATCT 1 cut(s) 538
BisI GCNGC 6 cut(s) 112, 260, 473, 476, 513, 570
BlsI GCNGC 6 cut(s) 113, 261, 474, 477, 514, 571
Bme1390I CCNGG 1 cut(s) 1185
Bme18I GGWCC 3 cut(s) 88, 871, 1013
BmeT110I CYCGRG 2 cut(s) 71, 83
BmgBI CACGTC 1 cut(s) 118
BmgT120I GGNCC 3 cut(s) 88, 871, 1013
BmiI GGNNCC 4 cut(s) 258, 1041, 1054, 1200
BmrFI CCNGG 1 cut(s) 1185
BmsI GCATC 6 cut(s) 191, 255, 316, 411, 416, 536
BpiI GAAGAC 2 cut(s) 112, 854
BplI GAGNNNNNCTC 2 cut(s) 256, 288
BsaBI GATNNNNATC 1 cut(s) 537
BsaHI GRCGYC 1 cut(s) 216
BsaJI CCNNGG 2 cut(s) 297, 1009
BsaWI WCCGGW 1 cut(s) 184
Bsc4I CCNNNNNNNGG 1 cut(s) 1049
Bse1I ACTGG 1 cut(s) 769
Bse3DI GCAATG 1 cut(s) 302
Bse8I GATNNNNATC 1 cut(s) 537
BseBI CCWGG 1 cut(s) 1185
BseDI CCNNGG 2 cut(s) 297, 1009
BseJI GATNNNNATC 1 cut(s) 537
BseLI CCNNNNNNNGG 1 cut(s) 1049
BseMI GCAATG 1 cut(s) 302
BseMII CTCAG 1 cut(s) 429
BseNI ACTGG 1 cut(s) 769
BseRI GAGGAG 2 cut(s) 347, 699
BseSI GKGCMC 1 cut(s) 496
BseXI GCAGC 2 cut(s) 462, 524
BseYI CCCAGC 2 cut(s) 663, 1167
Bsh1285I CGRYCG 1 cut(s) 278
BshFI GGCC 1 cut(s) 114
BshNI GGYRCC 2 cut(s) 1052, 1198
BsiEI CGRYCG 1 cut(s) 278
BsiHKCI CYCGRG 2 cut(s) 71, 83
BsiSI CCGG 2 cut(s) 185, 254
BslI CCNNNNNNNGG 1 cut(s) 1049
BsnI GGCC 1 cut(s) 114
BsoBI CYCGRG 2 cut(s) 71, 83
Bsp1286I GDGCHC 2 cut(s) 78, 496
Bsp143I GATC 4 cut(s) 532, 538, 1021, 1104
BspACI CCGC 4 cut(s) 111, 260, 472, 570
BspANI GGCC 1 cut(s) 114
BspCNI CTCAG 1 cut(s) 430
BspLI GGNNCC 4 cut(s) 258, 1041, 1054, 1200
BspPI GGATC 1 cut(s) 1099
BspQI GCTCTTC 1 cut(s) 699
BspT107I GGYRCC 2 cut(s) 1052, 1198
BsrDI GCAATG 1 cut(s) 302
BsrI ACTGG 1 cut(s) 769
BssECI CCNNGG 2 cut(s) 297, 1009
BssMI GATC 4 cut(s) 532, 538, 1021, 1104
BssNI GRCGYC 1 cut(s) 216
BssSI CACGAG 1 cut(s) 125
BssT1I CCWWGG 1 cut(s) 1009
Bst2BI CACGAG 1 cut(s) 125
Bst2UI CCWGG 1 cut(s) 1185
Bst4CI ACNGT 3 cut(s) 460, 701, 911
Bst6I CTCTTC 1 cut(s) 699
BstACI GRCGYC 1 cut(s) 216
BstC8I GCNNGC 4 cut(s) 137, 206, 357, 470
BstDEI CTNAG 2 cut(s) 438, 614
BstKTI GATC 4 cut(s) 535, 541, 1024, 1107
BstMBI GATC 4 cut(s) 532, 538, 1021, 1104
BstMCI CGRYCG 1 cut(s) 278
BstMWI GCNNNNNNNGC 3 cut(s) 57, 205, 259
BstNI CCWGG 1 cut(s) 1185
BstSCI CCNGG 1 cut(s) 1183
BstSLI GKGCMC 1 cut(s) 496
BstV1I GCAGC 2 cut(s) 462, 524
BstV2I GAAGAC 2 cut(s) 112, 854
BstX2I RGATCY 1 cut(s) 538
BstYI RGATCY 1 cut(s) 538
BsuRI GGCC 1 cut(s) 114
BtgZI GCGATG 1 cut(s) 214
BtrI CACGTC 1 cut(s) 118
BtsIMutI CAGTG 2 cut(s) 494, 776
Cac8I GCNNGC 4 cut(s) 137, 206, 357, 470
CaiI CAGNNNCTG 1 cut(s) 865
Cfr13I GGNCC 3 cut(s) 88, 871, 1013
CseI GACGC 1 cut(s) 154
CsiI ACCWGGT 1 cut(s) 1183
Csp6I GTAC 6 cut(s) 175, 752, 857, 962, 1053, 1127
CviAII CATG 1 cut(s) 1135
CviQI GTAC 6 cut(s) 175, 752, 857, 962, 1053, 1127
DdeI CTNAG 2 cut(s) 438, 614
DpnI GATC 4 cut(s) 534, 540, 1023, 1106
DpnII GATC 4 cut(s) 532, 538, 1021, 1104
DraI TTTAAA 1 cut(s) 381
EaeI YGGCCR 1 cut(s) 112
Eam1104I CTCTTC 1 cut(s) 699
EarI CTCTTC 1 cut(s) 699
Eco130I CCWWGG 1 cut(s) 1009
Eco24I GRGCYC 1 cut(s) 78
Eco47I GGWCC 3 cut(s) 88, 871, 1013
Eco57I CTGAAG 3 cut(s) 19, 887, 987
Eco88I CYCGRG 2 cut(s) 71, 83
EcoO109I RGGNCCY 1 cut(s) 88
EcoRII CCWGG 1 cut(s) 1183
EcoT14I CCWWGG 1 cut(s) 1009
EcoT38I GRGCYC 1 cut(s) 78
ErhI CCWWGG 1 cut(s) 1009
FaeI CATG 1 cut(s) 1138
FaiI YATR 9 cut(s) 346, 413, 429, 431, 632, 669, 1037, 1136, 1190
FalI AAGNNNNNCTT 2 cut(s) 321, 353
FatI CATG 1 cut(s) 1134
FauNDI CATATG 1 cut(s) 429
Fnu4HI GCNGC 6 cut(s) 112, 260, 473, 476, 513, 570
FriOI GRGCYC 1 cut(s) 78
Fsp4HI GCNGC 6 cut(s) 112, 260, 473, 476, 513, 570
FspBI CTAG 4 cut(s) 30, 536, 710, 815
GluI GCNGC 6 cut(s) 112, 260, 473, 476, 513, 570
GsaI CCCAGC 2 cut(s) 667, 1171
HaeIII GGCC 1 cut(s) 114
HapII CCGG 2 cut(s) 185, 254
HgaI GACGC 1 cut(s) 154
Hin1I GRCGYC 1 cut(s) 216
Hin1II CATG 1 cut(s) 1138
HinfI GANTC 7 cut(s) 26, 143, 236, 271, 293, 643, 1154
HpaII CCGG 2 cut(s) 185, 254
HphI GGTGA 4 cut(s) 689, 803, 908, 1156
Hpy188I TCNGA 4 cut(s) 298, 396, 532, 1104
Hpy188III TCNNGA 7 cut(s) 169, 311, 536, 542, 677, 782, 887
Hpy99I CGWCG 2 cut(s) 218, 221
HpyAV CCTTC 7 cut(s) 88, 157, 709, 814, 862, 919, 946
HpyCH4III ACNGT 3 cut(s) 460, 701, 911
HpyCH4IV ACGT 2 cut(s) 117, 216
HpyF10VI GCNNNNNNNGC 3 cut(s) 57, 205, 259
HpyF3I CTNAG 2 cut(s) 438, 614
HpySE526I ACGT 2 cut(s) 117, 216
Hsp92I GRCGYC 1 cut(s) 216
Hsp92II CATG 1 cut(s) 1138
KpnI GGTACC 1 cut(s) 1056
Kzo9I GATC 4 cut(s) 532, 538, 1021, 1104
LguI GCTCTTC 1 cut(s) 699
LmnI GCTCC 4 cut(s) 256, 334, 352, 1081
Lsp1109I GCAGC 2 cut(s) 462, 524
LweI GCATC 6 cut(s) 191, 255, 316, 411, 416, 536
MabI ACCWGGT 1 cut(s) 1183
MaeI CTAG 4 cut(s) 30, 536, 710, 815
MaeII ACGT 2 cut(s) 117, 216
MaeIII GTNAC 1 cut(s) 905
MalI GATC 4 cut(s) 534, 540, 1023, 1106
MboI GATC 4 cut(s) 532, 538, 1021, 1104
MfeI CAATTG 2 cut(s) 7, 1213
MflI RGATCY 1 cut(s) 538
MhlI GDGCHC 2 cut(s) 78, 496
MluCI AATT 8 cut(s) 7, 376, 452, 521, 758, 842, 968, 1213
MlyI GAGTC 4 cut(s) 20, 152, 245, 265
MseI TTAA 5 cut(s) 327, 380, 740, 1119, 1140
MspA1I CMGCKG 1 cut(s) 180
MspI CCGG 2 cut(s) 185, 254
MspR9I CCNGG 1 cut(s) 1185
MunI CAATTG 2 cut(s) 7, 1213
MvaI CCWGG 1 cut(s) 1185
MwoI GCNNNNNNNGC 3 cut(s) 57, 205, 259
NdeI CATATG 1 cut(s) 429
NdeII GATC 4 cut(s) 532, 538, 1021, 1104
NlaIII CATG 1 cut(s) 1138
NlaIV GGNNCC 4 cut(s) 258, 1041, 1054, 1200
NmeAIII GCCGAG 2 cut(s) 202, 288
PaeR7I CTCGAG 2 cut(s) 71, 83
PciSI GCTCTTC 1 cut(s) 699
PcsI WCGNNNNNNNCGW 1 cut(s) 123
PfeI GAWTC 3 cut(s) 293, 643, 1154
PflFI GACNNNGTC 1 cut(s) 274
PkrI GCNGC 6 cut(s) 113, 261, 474, 477, 514, 571
PleI GAGTC 4 cut(s) 20, 151, 244, 265
PpsI GAGTC 4 cut(s) 20, 151, 244, 265
PpuMI RGGWCCY 1 cut(s) 88
Psp5II RGGWCCY 1 cut(s) 88
Psp6I CCWGG 1 cut(s) 1183
PspFI CCCAGC 2 cut(s) 663, 1167
PspGI CCWGG 1 cut(s) 1183
PspN4I GGNNCC 4 cut(s) 258, 1041, 1054, 1200
PspPI GGNCC 3 cut(s) 88, 871, 1013
PspPPI RGGWCCY 1 cut(s) 88
PspXI VCTCGAGB 2 cut(s) 71, 83
PstNI CAGNNNCTG 1 cut(s) 865
PsuI RGATCY 1 cut(s) 538
PsyI GACNNNGTC 1 cut(s) 274
PvuII CAGCTG 1 cut(s) 180
RsaI GTAC 6 cut(s) 176, 753, 858, 963, 1054, 1128
RsaNI GTAC 6 cut(s) 175, 752, 857, 962, 1053, 1127
SapI GCTCTTC 1 cut(s) 699
SaqAI TTAA 5 cut(s) 327, 380, 740, 1119, 1140
SatI GCNGC 6 cut(s) 112, 260, 473, 476, 513, 570
Sau3AI GATC 4 cut(s) 532, 538, 1021, 1104
Sau96I GGNCC 3 cut(s) 88, 871, 1013
SchI GAGTC 4 cut(s) 20, 152, 245, 265
ScrFI CCNGG 1 cut(s) 1185
SduI GDGCHC 2 cut(s) 78, 496
SexAI ACCWGGT 1 cut(s) 1183
SfaNI GCATC 6 cut(s) 191, 255, 316, 411, 416, 536
Sfr274I CTCGAG 2 cut(s) 71, 83
SinI GGWCC 3 cut(s) 88, 871, 1013
SlaI CTCGAG 2 cut(s) 71, 83
SmlI CTYRAG 2 cut(s) 71, 83
SmoI CTYRAG 2 cut(s) 71, 83
Sse9I AATT 8 cut(s) 7, 376, 452, 521, 758, 842, 968, 1213
SsiI CCGC 4 cut(s) 111, 260, 472, 570
SspMI CTAG 4 cut(s) 30, 536, 710, 815
StyD4I CCNGG 1 cut(s) 1183
StyI CCWWGG 1 cut(s) 1009
TaaI ACNGT 3 cut(s) 460, 701, 911
TaiI ACGT 2 cut(s) 120, 219
TaqI TCGA 4 cut(s) 72, 84, 234, 543
TaqII GACCGA 1 cut(s) 264
TasI AATT 8 cut(s) 7, 376, 452, 521, 758, 842, 968, 1213
TauI GCSGC 4 cut(s) 114, 262, 475, 572
TfiI GAWTC 3 cut(s) 293, 643, 1154
Tru1I TTAA 5 cut(s) 327, 380, 740, 1119, 1140
Tru9I TTAA 5 cut(s) 327, 380, 740, 1119, 1140
TscAI CASTG 2 cut(s) 501, 776
TseI GCWGC 2 cut(s) 475, 512
TspDTI ATGAA 5 cut(s) 94, 416, 446, 561, 609
TspRI CASTG 2 cut(s) 501, 776
Tth111I GACNNNGTC 1 cut(s) 274
VpaK11BI GGWCC 3 cut(s) 88, 871, 1013
XapI RAATTY 1 cut(s) 968
XbaI TCTAGA 1 cut(s) 535
XhoI CTCGAG 2 cut(s) 71, 83
XspI CTAG 4 cut(s) 30, 536, 710, 815
ZraI GACGTC 1 cut(s) 217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.