Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0001668

Physical Location & Seq

Genomic Coordinates Reverse (-)

17583691 .. 17586098

Gene Structure 2408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1071100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGCCGATGCAGATTCCAACAATTTCACCAAAACAATCTGCTCAATCTGCTACGAAGACCTCAAGCCCACTTCTGAGGATCTGCAATCCATCTCCATCTGCGGCCATGTCTTCCACGAGCTCTGTCTGCAACAGTGGTTCGAGTACTCTGCGAGGACGAAGAAGTACACTTGCCCGGTGTGCAAACAAAATTGCAAGCAAAAGGATGCCGGCCGGCTTTATTTTCAGTCGGTGGGGGACGCGGCGGATGCGACTCAGAGGCCCATTCGCAAATGCGAGGAAGATCCCCCGGTGTTGCGTCGAGAGGTGAAAGGTTGGAGGTGGCGGAGCTGGGAATTCGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00053 ko01100 map00053 map01100

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

115

Amino Acids

13.33

Weight (kDa)

7.52

Isoelectric Point (pI)

59.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	13 - 62	1.2e-10	Ring finger domain
zf-RING_UBOX	PF13445	14 - 59	1.4e-09	RING-type zinc-finger
zf-RING_5	PF14634	14 - 63	2.1e-07	zinc-RING finger domain
zf-C3HC4	PF00097	14 - 61	2.2e-07	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	15 - 62	2.8e-06	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001668)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01245 AT4G01270
fragaria_vesca	FvH4_1g19860 FvH4_1g19860 FvH4_1g19860 FvH4_1g19860 FvH4_7g15320 FvH4_7g15320 FvH4_7g15320 FvH4_7g15320 FvH4_7g15320
malus_domestica	MD01G1070500.v1.1 MD01G1070600.v1.1 MD01G1071100.v1.1
prunus_persica	Prupe.2G177000_v2.0.a1 Prupe.2G177000_v2.0.a1 Prupe.2G177000_v2.0.a1 Prupe.2G177000_v2.0.a1 Prupe.2G177000_v2.0.a1 Prupe.2G177000_v2.0.a1 Prupe.2G177000_v2.0.a1 Prupe.2G177000_v2.0.a1 Prupe.2G177000_v2.0.a1 Prupe.2G177100_v2.0.a1 Prupe.2G177100_v2.0.a1
pyrus_communis	pycom01g09970 pycom01g10000 pycom07g12860
rosa_chinensis	RchiOBHm_Chr1g0357651 RchiOBHm_Chr2g0111671
rosa_laevigata	RLG00000017916 RLG00000028011
rosa_multiflora	Rmu_sc0004683.1_g000004 Rmu_sc0005791.1_g000023
rosa_roxburghii	Rroxscaffold_2G00132180 Rroxscaffold_4G00298670
rosa_rugosa	Rorug01G0257400 Rorug02G0175300 Rorug02G0175400
rosa_samantha	Rh1AG271400 Rh1BG238300 Rh1CG255200 Rh1DG266600 Rh2AG228300 Rh2BG240500 Rh2CG231700 Rh2DG236300
rosa_wichuraiana	Rw1G024190 Rw2G017620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	242
AciI	CCGC	4 cut(s)	102, 242, 245, 325
AclWI	GGATC	2 cut(s)	87, 278
AcoI	YGGCCR	3 cut(s)	3, 103, 211
AcsI	RAATTY	1 cut(s)	335
AfaI	GTAC	2 cut(s)	146, 167
AluBI	AGCT	2 cut(s)	121, 330
AluI	AGCT	2 cut(s)	121, 330
Alw21I	GWGCWC	1 cut(s)	123
AlwI	GGATC	2 cut(s)	87, 278
AoxI	GGCC	4 cut(s)	3, 103, 211, 260
ApoI	RAATTY	1 cut(s)	335
AspS9I	GGNCC	1 cut(s)	261
AsuC2I	CCSGG	2 cut(s)	176, 290
AsuHPI	GGTGA	2 cut(s)	19, 319
BanII	GRGCYC	1 cut(s)	123
BauI	CACGAG	1 cut(s)	116
BbsI	GAAGAC	2 cut(s)	63, 103
Bbv12I	GWGCWC	1 cut(s)	123
BccI	CCATC	2 cut(s)	98, 104
BcgI	CGANNNNNNTGC	2 cut(s)	131, 165
BcnI	CCSGG	2 cut(s)	176, 290
BisI	GCNGC	2 cut(s)	103, 243
BlsI	GCNGC	2 cut(s)	104, 244
BmcAI	AGTACT	1 cut(s)	146
Bme1390I	CCNGG	2 cut(s)	176, 290
BmgT120I	GGNCC	1 cut(s)	261
BmrFI	CCNGG	2 cut(s)	176, 290
BmsI	GCATC	2 cut(s)	196, 238
BpiI	GAAGAC	2 cut(s)	63, 103
BpuEI	CTTGAG	1 cut(s)	47
BpuMI	CCSGG	2 cut(s)	176, 290
BsaJI	CCNNGG	1 cut(s)	288
Bse118I	RCCGGY	2 cut(s)	209, 213
BseDI	CCNNGG	1 cut(s)	288
BseGI	GGATG	2 cut(s)	211, 253
BseMII	CTCAG	2 cut(s)	66, 269
BseX3I	CGGCCG	1 cut(s)	211
BseYI	CCCAGC	1 cut(s)	330
Bsh1236I	CGCG	1 cut(s)	242
Bsh1285I	CGRYCG	1 cut(s)	214
BshFI	GGCC	4 cut(s)	5, 105, 213, 262
BsiEI	CGRYCG	1 cut(s)	214
BsiHKAI	GWGCWC	1 cut(s)	123
BsiSI	CCGG	4 cut(s)	176, 210, 214, 290
BslFI	GGGAC	1 cut(s)	251
BsmFI	GGGAC	1 cut(s)	251
BsnI	GGCC	4 cut(s)	5, 105, 213, 262
Bsp1286I	GDGCHC	1 cut(s)	123
Bsp143I	GATC	2 cut(s)	79, 283
BspACI	CCGC	4 cut(s)	102, 242, 245, 325
BspANI	GGCC	4 cut(s)	5, 105, 213, 262
BspCNI	CTCAG	2 cut(s)	67, 268
BspFNI	CGCG	1 cut(s)	242
BspPI	GGATC	2 cut(s)	87, 278
BsrFI	RCCGGY	2 cut(s)	209, 213
BssAI	RCCGGY	2 cut(s)	209, 213
BssECI	CCNNGG	1 cut(s)	288
BssMI	GATC	2 cut(s)	79, 283
BssSI	CACGAG	1 cut(s)	116
Bst2BI	CACGAG	1 cut(s)	116
Bst4CI	ACNGT	1 cut(s)	135
BstC8I	GCNNGC	3 cut(s)	197, 211, 215
BstDEI	CTNAG	2 cut(s)	75, 255
BstF5I	GGATG	2 cut(s)	211, 253
BstFNI	CGCG	1 cut(s)	242
BstKTI	GATC	2 cut(s)	82, 286
BstMBI	GATC	2 cut(s)	79, 283
BstMCI	CGRYCG	1 cut(s)	214
BstMWI	GCNNNNNNNGC	4 cut(s)	48, 127, 180, 248
BstSCI	CCNGG	2 cut(s)	174, 288
BstUI	CGCG	1 cut(s)	242
BstV2I	GAAGAC	2 cut(s)	63, 103
BstX2I	RGATCY	2 cut(s)	79, 283
BstYI	RGATCY	2 cut(s)	79, 283
BstZI	CGGCCG	1 cut(s)	211
BsuRI	GGCC	4 cut(s)	5, 105, 213, 262
BtsCI	GGATG	2 cut(s)	211, 253
BtsIMutI	CAGTG	1 cut(s)	140
Cac8I	GCNNGC	3 cut(s)	197, 211, 215
Cfr10I	RCCGGY	2 cut(s)	209, 213
Cfr13I	GGNCC	1 cut(s)	261
CseI	GACGC	2 cut(s)	248, 287
Csp6I	GTAC	2 cut(s)	145, 166
CviAII	CATG	1 cut(s)	107
CviJI	RGCY	8 cut(s)	5, 67, 105, 121, 213, 217, 262, 330
CviKI_1	RGCY	8 cut(s)	5, 67, 105, 121, 213, 217, 262, 330
CviQI	GTAC	2 cut(s)	145, 166
DdeI	CTNAG	2 cut(s)	75, 255
DpnI	GATC	2 cut(s)	81, 285
DpnII	GATC	2 cut(s)	79, 283
EaeI	YGGCCR	3 cut(s)	3, 103, 211
EagI	CGGCCG	1 cut(s)	211
EciI	GGCGGA	2 cut(s)	260, 340
Ecl136II	GAGCTC	1 cut(s)	121
EclXI	CGGCCG	1 cut(s)	211
Eco24I	GRGCYC	1 cut(s)	123
Eco52I	CGGCCG	1 cut(s)	211
Eco53kI	GAGCTC	1 cut(s)	121
EcoICRI	GAGCTC	1 cut(s)	121
EcoRI	GAATTC	1 cut(s)	335
EcoT38I	GRGCYC	1 cut(s)	123
FaeI	CATG	1 cut(s)	110
FaiI	YATR	1 cut(s)	108
FaqI	GGGAC	1 cut(s)	251
FatI	CATG	1 cut(s)	106
Fnu4HI	GCNGC	2 cut(s)	103, 243
FokI	GGATG	2 cut(s)	218, 260
FriOI	GRGCYC	1 cut(s)	123
Fsp4HI	GCNGC	2 cut(s)	103, 243
GluI	GCNGC	2 cut(s)	103, 243
GsaI	CCCAGC	1 cut(s)	334
HaeIII	GGCC	4 cut(s)	5, 105, 213, 262
HapII	CCGG	4 cut(s)	176, 210, 214, 290
HgaI	GACGC	2 cut(s)	248, 287
Hin1II	CATG	1 cut(s)	110
HinfI	GANTC	2 cut(s)	14, 253
HpaII	CCGG	4 cut(s)	176, 210, 214, 290
HphI	GGTGA	2 cut(s)	19, 319
Hpy166II	GTNNAC	1 cut(s)	168
Hpy188I	TCNGA	2 cut(s)	76, 258
Hpy188III	TCNNGA	1 cut(s)	302
Hpy8I	GTNNAC	1 cut(s)	168
Hpy99I	CGWCG	1 cut(s)	303
HpyCH4III	ACNGT	1 cut(s)	135
HpyCH4V	TGCA	5 cut(s)	11, 85, 130, 183, 195
HpyF10VI	GCNNNNNNNGC	4 cut(s)	48, 127, 180, 248
HpyF3I	CTNAG	2 cut(s)	75, 255
Hsp92II	CATG	1 cut(s)	110
KroI	GCCGGC	2 cut(s)	209, 213
KroNI	GCCGGC	2 cut(s)	211, 215
Kzo9I	GATC	2 cut(s)	79, 283
LmnI	GCTCC	1 cut(s)	327
LpnPI	CCDG	5 cut(s)	189, 223, 227, 303, 316
LweI	GCATC	2 cut(s)	196, 238
MalI	GATC	2 cut(s)	81, 285
MboI	GATC	2 cut(s)	79, 283
MboII	GAAGA	4 cut(s)	68, 103, 172, 293
MflI	RGATCY	2 cut(s)	79, 283
MhlI	GDGCHC	1 cut(s)	123
MluCI	AATT	3 cut(s)	22, 190, 335
MlyI	GAGTC	1 cut(s)	247
MmeI	TCCRAC	2 cut(s)	42, 296
MnlI	CCTC	7 cut(s)	70, 71, 147, 252, 271, 298, 312
MroNI	GCCGGC	2 cut(s)	209, 213
MspI	CCGG	4 cut(s)	176, 210, 214, 290
MspR9I	CCNGG	2 cut(s)	176, 290
MvnI	CGCG	1 cut(s)	242
MwoI	GCNNNNNNNGC	4 cut(s)	48, 127, 180, 248
NaeI	GCCGGC	2 cut(s)	211, 215
NciI	CCSGG	2 cut(s)	176, 290
NdeII	GATC	2 cut(s)	79, 283
NgoMIV	GCCGGC	2 cut(s)	209, 213
NlaIII	CATG	1 cut(s)	110
PdiI	GCCGGC	2 cut(s)	211, 215
PfeI	GAWTC	1 cut(s)	14
PkrI	GCNGC	2 cut(s)	104, 244
PleI	GAGTC	1 cut(s)	247
PpsI	GAGTC	1 cut(s)	247
Psp124BI	GAGCTC	1 cut(s)	123
PspFI	CCCAGC	1 cut(s)	330
PspPI	GGNCC	1 cut(s)	261
PsuI	RGATCY	2 cut(s)	79, 283
RsaI	GTAC	2 cut(s)	146, 167
RsaNI	GTAC	2 cut(s)	145, 166
SacI	GAGCTC	1 cut(s)	123
SatI	GCNGC	2 cut(s)	103, 243
Sau3AI	GATC	2 cut(s)	79, 283
Sau96I	GGNCC	1 cut(s)	261
ScaI	AGTACT	1 cut(s)	146
SchI	GAGTC	1 cut(s)	247
ScrFI	CCNGG	2 cut(s)	176, 290
SduI	GDGCHC	1 cut(s)	123
SetI	ASST	6 cut(s)	63, 123, 309, 316, 323, 332
SfaNI	GCATC	2 cut(s)	196, 238
SmlI	CTYRAG	1 cut(s)	62
SmoI	CTYRAG	1 cut(s)	62
Sse9I	AATT	3 cut(s)	22, 190, 335
SsiI	CCGC	4 cut(s)	102, 242, 245, 325
SstI	GAGCTC	1 cut(s)	123
StyD4I	CCNGG	2 cut(s)	174, 288
TaaI	ACNGT	1 cut(s)	135
TaqI	TCGA	2 cut(s)	141, 301
TasI	AATT	3 cut(s)	22, 190, 335
TatI	WGTACW	2 cut(s)	144, 165
TauI	GCSGC	2 cut(s)	105, 245
TfiI	GAWTC	1 cut(s)	14
TscAI	CASTG	1 cut(s)	140
TspRI	CASTG	1 cut(s)	140
XapI	RAATTY	1 cut(s)	335
ZrmI	AGTACT	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.