Rw2G017620

Ring finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0001668
Physical Location & Seq
Forward (+)
21847118 .. 21848960
1843 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G017620.1

Sequence Viewer

Length: 927 bp
ATGAGTAATAGGAATCGCAAAGAACTGATAGCCCAGTGCAATCTTCTTGAACGAGGAGAGGCTCTTCAACTTAAAAAACTAGAGAAGGCTAAAGGAAAGATAAATAGATTAAATACAAAGGTACAGGAACTGACAGACCAGTGCAATCTTCTTGGACGAGGTGAGGCTCGTTATAGTAGAAAGCTAGAGAAGGCTAAAGGAAAGATAAACAAATTGAAGACAAAGGTACAGAAACTGAAGGACCAATGCAATCTTCTTGAACAAGGTGAGGCTCGTCACAGTAGAAAGCTAGAGAAGGCTAAAGGGAAGATAAATACATTGAAGGCAAAGGTACTAGAATTTGATGGTGCTGTTGAAGTAGAGAAAGAAACTTCAGTCCTTGGACCAAGTGATCTGTTTGAGAGTATGGTTCCTGTGAGTGGTACCTGTAATGATACTGCCAAAGCTCCTGCTGATGATATTGCAGATGTTCTGATCCTTGACGATGTTAAACAAGTCCAATCCATGCTTAACATTACAAAGGAATCTCCAATCACCCAGCCACTTGCCAGACCAGATGCTGTGATTCTTGATGATCTCAACCAAGTTCAACCCATGCTTAATAGTAGCAAGGAATCTCCAATTAGACAACCACTTCTCAGACCAGTGAGTGCATATTTCTCTGGTGGCTTGGTTGGTCCTGATGGAACAAAAAGATTTTTAGGTAAATGGTGCAAGCGGCGCGAGAACAATCAGTTGGTAACAAATAAATATTCAAGTACAGATGCTGGCTGTTCGATTGTTGTAGTATCTGATGAAGAGGATATTACCGAGAATATACCGCAGATAAAGAGGAGCAAGTATGAAGACAAGTCAAAAATTGTACAGTCCCAAGGGTGCTTGCAGTACAACACTTCTTTGGAAGGGTCGGTAACTATGAGGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00053 ko01100 map00053 map01100
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

308

Amino Acids

34.31

Weight (kDa)

9.21

Isoelectric Point (pI)

35.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 422
AccB1I GGYRCC 1 cut(s) 422
AccII CGCG 1 cut(s) 723
AciI CCGC 2 cut(s) 718, 821
AclWI GGATC 1 cut(s) 469
AcsI RAATTY 1 cut(s) 338
AcuI CTGAAG 2 cut(s) 257, 357
AfaI GTAC 7 cut(s) 123, 228, 333, 424, 760, 864, 887
AfiI CCNNNNNNNGG 1 cut(s) 419
AgsI TTSAA 8 cut(s) 50, 68, 217, 260, 322, 356, 590, 756
AjuI GAANNNNNNNTTGG 4 cut(s) 237, 269, 719, 751
AluBI AGCT 3 cut(s) 184, 289, 446
AluI AGCT 3 cut(s) 184, 289, 446
AlwI GGATC 1 cut(s) 469
AlwNI CAGNNNCTG 4 cut(s) 130, 235, 560, 767
ApoI RAATTY 1 cut(s) 338
Asp718I GGTACC 1 cut(s) 422
AspLEI GCGC 1 cut(s) 723
AspS9I GGNCC 3 cut(s) 241, 383, 677
AsuHPI GGTGA 3 cut(s) 173, 278, 526
AvaII GGWCC 3 cut(s) 241, 383, 677
BanI GGYRCC 1 cut(s) 422
BbsI GAAGAC 2 cut(s) 224, 852
BccI CCATC 2 cut(s) 338, 677
BfaI CTAG 4 cut(s) 80, 185, 290, 335
BisI GCNGC 1 cut(s) 719
BlsI GCNGC 1 cut(s) 720
Bme18I GGWCC 3 cut(s) 241, 383, 677
BmgT120I GGNCC 3 cut(s) 241, 383, 677
BmiI GGNNCC 2 cut(s) 411, 424
BmrI ACTGGG 1 cut(s) 28
BmsI GCATC 2 cut(s) 547, 754
BmuI ACTGGG 1 cut(s) 28
BpiI GAAGAC 2 cut(s) 224, 852
BsaJI CCNNGG 2 cut(s) 379, 871
Bsc4I CCNNNNNNNGG 1 cut(s) 419
Bse1I ACTGG 3 cut(s) 34, 139, 644
BseDI CCNNGG 2 cut(s) 379, 871
BseLI CCNNNNNNNGG 1 cut(s) 419
BseMII CTCAG 1 cut(s) 652
BseNI ACTGG 3 cut(s) 34, 139, 644
BseRI GAGGAG 2 cut(s) 69, 847
BseYI CCCAGC 1 cut(s) 537
Bsh1236I CGCG 1 cut(s) 723
BshNI GGYRCC 1 cut(s) 422
BslFI GGGAC 1 cut(s) 853
BslI CCNNNNNNNGG 1 cut(s) 419
BsmFI GGGAC 1 cut(s) 853
Bsp1407I TGTACA 1 cut(s) 862
Bsp143I GATC 3 cut(s) 391, 474, 574
BspACI CCGC 2 cut(s) 718, 821
BspCNI CTCAG 1 cut(s) 651
BspFNI CGCG 1 cut(s) 723
BspLI GGNNCC 2 cut(s) 411, 424
BspPI GGATC 1 cut(s) 469
BspQI GCTCTTC 1 cut(s) 69
BspT107I GGYRCC 1 cut(s) 422
BsrGI TGTACA 1 cut(s) 862
BsrI ACTGG 3 cut(s) 34, 139, 644
BssECI CCNNGG 2 cut(s) 379, 871
BssMI GATC 3 cut(s) 391, 474, 574
BssT1I CCWWGG 2 cut(s) 379, 871
Bst4CI ACNGT 2 cut(s) 281, 867
Bst6I CTCTTC 2 cut(s) 69, 792
BstAUI TGTACA 1 cut(s) 862
BstC8I GCNNGC 3 cut(s) 716, 769, 881
BstDEI CTNAG 1 cut(s) 638
BstFNI CGCG 1 cut(s) 723
BstHHI GCGC 1 cut(s) 723
BstKTI GATC 3 cut(s) 394, 477, 577
BstMBI GATC 3 cut(s) 391, 474, 574
BstMWI GCNNNNNNNGC 1 cut(s) 720
BstUI CGCG 1 cut(s) 723
BstV2I GAAGAC 2 cut(s) 224, 852
BtsIMutI CAGTG 3 cut(s) 41, 146, 651
Cac8I GCNNGC 3 cut(s) 716, 769, 881
CaiI CAGNNNCTG 4 cut(s) 130, 235, 560, 767
CfoI GCGC 1 cut(s) 723
Cfr13I GGNCC 3 cut(s) 241, 383, 677
Csp6I GTAC 7 cut(s) 122, 227, 332, 423, 759, 863, 886
CviAII CATG 2 cut(s) 505, 595
CviQI GTAC 7 cut(s) 122, 227, 332, 423, 759, 863, 886
DdeI CTNAG 1 cut(s) 638
DpnI GATC 3 cut(s) 393, 476, 576
DpnII GATC 3 cut(s) 391, 474, 574
Eam1104I CTCTTC 2 cut(s) 69, 792
EarI CTCTTC 2 cut(s) 69, 792
Eco130I CCWWGG 2 cut(s) 379, 871
Eco47I GGWCC 3 cut(s) 241, 383, 677
Eco57I CTGAAG 2 cut(s) 257, 357
EcoT14I CCWWGG 2 cut(s) 379, 871
ErhI CCWWGG 2 cut(s) 379, 871
FaeI CATG 2 cut(s) 508, 598
FaiI YATR 8 cut(s) 174, 407, 506, 596, 655, 818, 843, 917
FaqI GGGAC 1 cut(s) 853
FatI CATG 2 cut(s) 504, 594
Fnu4HI GCNGC 1 cut(s) 719
Fsp4HI GCNGC 1 cut(s) 719
FspBI CTAG 4 cut(s) 80, 185, 290, 335
GlaI GCGC 1 cut(s) 722
GluI GCNGC 1 cut(s) 719
GsaI CCCAGC 1 cut(s) 541
HhaI GCGC 1 cut(s) 723
Hin1II CATG 2 cut(s) 508, 598
Hin6I GCGC 1 cut(s) 721
HinP1I GCGC 1 cut(s) 721
HinfI GANTC 4 cut(s) 13, 524, 565, 614
HphI GGTGA 3 cut(s) 173, 278, 526
Hpy188I TCNGA 3 cut(s) 474, 641, 793
Hpy188III TCNNGA 4 cut(s) 47, 257, 569, 680
HpyAV CCTTC 6 cut(s) 79, 184, 232, 289, 316, 896
HpyCH4III ACNGT 2 cut(s) 281, 867
HpyCH4V TGCA 7 cut(s) 39, 144, 249, 464, 653, 714, 883
HpyF10VI GCNNNNNNNGC 1 cut(s) 720
HpyF3I CTNAG 1 cut(s) 638
Hsp92II CATG 2 cut(s) 508, 598
HspAI GCGC 1 cut(s) 721
KpnI GGTACC 1 cut(s) 426
Kzo9I GATC 3 cut(s) 391, 474, 574
LguI GCTCTTC 1 cut(s) 69
LmnI GCTCC 2 cut(s) 451, 834
LweI GCATC 2 cut(s) 547, 754
MaeI CTAG 4 cut(s) 80, 185, 290, 335
MaeIII GTNAC 3 cut(s) 275, 739, 910
MalI GATC 3 cut(s) 393, 476, 576
MboI GATC 3 cut(s) 391, 474, 574
MboII GAAGA 8 cut(s) 35, 56, 140, 229, 245, 319, 809, 857
MluCI AATT 4 cut(s) 212, 338, 621, 858
MnlI CCTC 8 cut(s) 47, 52, 152, 157, 262, 793, 825, 912
MseI TTAA 5 cut(s) 72, 110, 489, 510, 600
MvnI CGCG 1 cut(s) 723
MwoI GCNNNNNNNGC 1 cut(s) 720
NdeII GATC 3 cut(s) 391, 474, 574
NlaIII CATG 2 cut(s) 508, 598
NlaIV GGNNCC 2 cut(s) 411, 424
NmuCI GTSAC 1 cut(s) 275
PciSI GCTCTTC 1 cut(s) 69
PfeI GAWTC 4 cut(s) 13, 524, 565, 614
PkrI GCNGC 1 cut(s) 720
PspFI CCCAGC 1 cut(s) 537
PspN4I GGNNCC 2 cut(s) 411, 424
PspPI GGNCC 3 cut(s) 241, 383, 677
PstNI CAGNNNCTG 4 cut(s) 130, 235, 560, 767
RsaI GTAC 7 cut(s) 123, 228, 333, 424, 760, 864, 887
RsaNI GTAC 7 cut(s) 122, 227, 332, 423, 759, 863, 886
SapI GCTCTTC 1 cut(s) 69
SaqAI TTAA 5 cut(s) 72, 110, 489, 510, 600
SatI GCNGC 1 cut(s) 719
Sau3AI GATC 3 cut(s) 391, 474, 574
Sau96I GGNCC 3 cut(s) 241, 383, 677
SfaNI GCATC 2 cut(s) 547, 754
SinI GGWCC 3 cut(s) 241, 383, 677
Sse9I AATT 4 cut(s) 212, 338, 621, 858
SsiI CCGC 2 cut(s) 718, 821
SspI AATATT 1 cut(s) 752
SspMI CTAG 4 cut(s) 80, 185, 290, 335
StyI CCWWGG 2 cut(s) 379, 871
TaaI ACNGT 2 cut(s) 281, 867
TaqI TCGA 1 cut(s) 776
TasI AATT 4 cut(s) 212, 338, 621, 858
TatI WGTACW 3 cut(s) 758, 862, 885
TauI GCSGC 1 cut(s) 721
TfiI GAWTC 4 cut(s) 13, 524, 565, 614
Tru1I TTAA 5 cut(s) 72, 110, 489, 510, 600
Tru9I TTAA 5 cut(s) 72, 110, 489, 510, 600
TscAI CASTG 3 cut(s) 41, 146, 651
TseFI GTSAC 1 cut(s) 275
Tsp45I GTSAC 1 cut(s) 275
TspDTI ATGAA 2 cut(s) 810, 858
TspRI CASTG 3 cut(s) 41, 146, 651
VpaK11BI GGWCC 3 cut(s) 241, 383, 677
XapI RAATTY 1 cut(s) 338
XspI CTAG 4 cut(s) 80, 185, 290, 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.