pycom07g12860

Ring finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0001668
Physical Location & Seq
Forward (+)
14225939 .. 14228070
2132 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g12860.4

Sequence Viewer

Length: 756 bp
ATGGTTACGTGGGTTGCAATTATAGGGAATTACAAAGACTTAACAAACAAATACAATGGTCTTGCACGAGAAGCTCGTGAGAGCAAAAAACTGGAGCAGGAGACAAGGGTACAAGAACTGGAGACAGTAGTCAAAGTAAAAGATAATGAAGTTTTGAGGGCTTTAAAAGCTTCAAAGACAACTTGGGGTGAAGGAATTATGCAGAATGGTGGATTATGTAACACTAATTCAGTGTCTGTCAACAGTTCACCAGAAGTTCAAAGAAAACATGCTTATGCTTCCATCCGTAACTTGGATAGGACTGAAAGCGAAAATGATCTACTCACCATTGCTCATGATAAAGTAAGAGATGCCTACTCTTTAATAGATAAAGATGCTCCAAAACTTTCCACAGCTAAGTCAGATGCAGTTTCTGATACTAGGAAAGAAACTCCCACTTGTAACGATACTGCCAGGACTCCTGCTACTGACATTGCTGATGTTGAACAAGATTACCCATGGTTAACATTAGAAAGGAGACTCATCCCACAACCGCTTCCCAGACCAGGTACATGGTGCAAGTGGGGTCTGAATCAAAGTTCTGGTAATTTGATTGTTGTAGGAGCTGCTGGAAGAGGTGGTAGAATCAAAGTTCTGAGATCACTGAATCAATCTACAGTGCTTTGTCAATCCAAGATTCCAAGGTGCAGGCAAGTATACAAGTTGCAACAGCAACTTCAAGTGAAATATGAGGGTATTCGATTTAGATCTGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00053 ko01100 map00053 map01100
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

252

Amino Acids

28.16

Weight (kDa)

9.41

Isoelectric Point (pI)

28.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 696
AciI CCGC 1 cut(s) 533
AfaI GTAC 2 cut(s) 111, 550
AfiI CCNNNNNNNGG 2 cut(s) 292, 545
AgsI TTSAA 4 cut(s) 174, 260, 485, 719
AjnI CCWGG 2 cut(s) 452, 544
AluBI AGCT 4 cut(s) 74, 170, 395, 605
AluI AGCT 4 cut(s) 74, 170, 395, 605
Alw26I GTCTC 3 cut(s) 95, 116, 511
AlwNI CAGNNNCTG 2 cut(s) 236, 413
ApeKI GCWGC 1 cut(s) 605
AsuHPI GGTGA 3 cut(s) 200, 240, 316
BauI CACGAG 2 cut(s) 66, 75
BbvI GCAGC 1 cut(s) 592
BccI CCATC 1 cut(s) 290
BciT130I CCWGG 2 cut(s) 454, 546
BcoDI GTCTC 3 cut(s) 95, 116, 511
BfaI CTAG 1 cut(s) 420
BfmI CTRYAG 1 cut(s) 654
BglII AGATCT 1 cut(s) 746
BisI GCNGC 1 cut(s) 606
BlsI GCNGC 1 cut(s) 607
Bme1390I CCNGG 2 cut(s) 454, 546
BmrFI CCNGG 2 cut(s) 454, 546
BmsI GCATC 3 cut(s) 340, 364, 394
BoxI GACNNNNGTC 1 cut(s) 128
BpmI CTGGAG 2 cut(s) 113, 140
BsaAI YACGTR 1 cut(s) 9
BsaBI GATNNNNATC 1 cut(s) 745
BsaJI CCNNGG 2 cut(s) 497, 680
Bsc4I CCNNNNNNNGG 2 cut(s) 292, 545
Bse1I ACTGG 2 cut(s) 96, 123
Bse3DI GCAATG 2 cut(s) 327, 471
Bse8I GATNNNNATC 1 cut(s) 745
BseBI CCWGG 2 cut(s) 454, 546
BseDI CCNNGG 2 cut(s) 497, 680
BseGI GGATG 2 cut(s) 282, 522
BseJI GATNNNNATC 1 cut(s) 745
BseLI CCNNNNNNNGG 2 cut(s) 292, 545
BseMI GCAATG 2 cut(s) 327, 471
BseMII CTCAG 1 cut(s) 626
BseNI ACTGG 2 cut(s) 96, 123
BseXI GCAGC 1 cut(s) 592
BsgI GTGCAG 1 cut(s) 706
BslI CCNNNNNNNGG 2 cut(s) 292, 545
BsmAI GTCTC 3 cut(s) 95, 116, 511
Bsp143I GATC 3 cut(s) 316, 638, 746
Bsp19I CCATGG 1 cut(s) 497
BspACI CCGC 1 cut(s) 533
BspCNI CTCAG 1 cut(s) 627
BspHI TCATGA 1 cut(s) 334
BsrDI GCAATG 2 cut(s) 327, 471
BsrI ACTGG 2 cut(s) 96, 123
BssECI CCNNGG 2 cut(s) 497, 680
BssMI GATC 3 cut(s) 316, 638, 746
BssNAI GTATAC 1 cut(s) 697
BssSI CACGAG 2 cut(s) 66, 75
BssT1I CCWWGG 2 cut(s) 497, 680
Bst1107I GTATAC 1 cut(s) 697
Bst2BI CACGAG 2 cut(s) 66, 75
Bst2UI CCWGG 2 cut(s) 454, 546
Bst4CI ACNGT 3 cut(s) 127, 245, 658
Bst6I CTCTTC 1 cut(s) 607
BstBAI YACGTR 1 cut(s) 9
BstC8I GCNNGC 1 cut(s) 689
BstDEI CTNAG 2 cut(s) 396, 635
BstDSI CCRYGG 1 cut(s) 497
BstF5I GGATG 2 cut(s) 282, 522
BstKTI GATC 3 cut(s) 319, 641, 749
BstMAI GTCTC 3 cut(s) 95, 116, 511
BstMBI GATC 3 cut(s) 316, 638, 746
BstMWI GCNNNNNNNGC 2 cut(s) 71, 167
BstNI CCWGG 2 cut(s) 454, 546
BstNSI RCATGY 1 cut(s) 272
BstPAI GACNNNNGTC 1 cut(s) 128
BstSCI CCNGG 2 cut(s) 452, 544
BstSFI CTRYAG 1 cut(s) 654
BstV1I GCAGC 1 cut(s) 592
BstX2I RGATCY 1 cut(s) 746
BstXI CCANNNNNNTGG 1 cut(s) 552
BstYI RGATCY 1 cut(s) 746
BstZ17I GTATAC 1 cut(s) 697
BtgI CCRYGG 1 cut(s) 497
BtsCI GGATG 2 cut(s) 282, 522
BtsIMutI CAGTG 3 cut(s) 237, 641, 663
Cac8I GCNNGC 1 cut(s) 689
CaiI CAGNNNCTG 2 cut(s) 236, 413
CciI TCATGA 1 cut(s) 334
CsiI ACCWGGT 1 cut(s) 544
Csp6I GTAC 2 cut(s) 110, 549
CviAII CATG 4 cut(s) 269, 335, 498, 552
CviJI RGCY 5 cut(s) 74, 161, 170, 395, 605
CviKI_1 RGCY 5 cut(s) 74, 161, 170, 395, 605
CviQI GTAC 2 cut(s) 110, 549
DdeI CTNAG 2 cut(s) 396, 635
DpnI GATC 3 cut(s) 318, 640, 748
DpnII GATC 3 cut(s) 316, 638, 746
DraI TTTAAA 1 cut(s) 165
Eam1104I CTCTTC 1 cut(s) 607
EarI CTCTTC 1 cut(s) 607
Eco130I CCWWGG 2 cut(s) 497, 680
EcoRII CCWGG 2 cut(s) 452, 544
EcoT14I CCWWGG 2 cut(s) 497, 680
ErhI CCWWGG 2 cut(s) 497, 680
FaeI CATG 4 cut(s) 272, 338, 501, 555
FatI CATG 4 cut(s) 268, 334, 497, 551
FblI GTMKAC 1 cut(s) 696
Fnu4HI GCNGC 1 cut(s) 606
FokI GGATG 2 cut(s) 269, 509
Fsp4HI GCNGC 1 cut(s) 606
FspBI CTAG 1 cut(s) 420
GluI GCNGC 1 cut(s) 606
GsuI CTGGAG 2 cut(s) 113, 140
Hin1II CATG 4 cut(s) 272, 338, 501, 555
HincII GTYRAC 2 cut(s) 241, 504
HindII GTYRAC 2 cut(s) 241, 504
HindIII AAGCTT 1 cut(s) 168
HinfI GANTC 6 cut(s) 457, 519, 571, 624, 646, 676
HpaI GTTAAC 1 cut(s) 504
HphI GGTGA 3 cut(s) 200, 240, 316
Hpy166II GTNNAC 4 cut(s) 241, 248, 504, 697
Hpy188I TCNGA 4 cut(s) 403, 415, 570, 636
Hpy188III TCNNGA 3 cut(s) 77, 335, 750
Hpy8I GTNNAC 4 cut(s) 241, 248, 504, 697
HpyAV CCTTC 1 cut(s) 185
HpyCH4III ACNGT 3 cut(s) 127, 245, 658
HpyCH4IV ACGT 1 cut(s) 8
HpyCH4V TGCA 7 cut(s) 17, 65, 202, 407, 558, 687, 706
HpyF10VI GCNNNNNNNGC 2 cut(s) 71, 167
HpyF3I CTNAG 2 cut(s) 396, 635
HpySE526I ACGT 1 cut(s) 8
Hsp92II CATG 4 cut(s) 272, 338, 501, 555
KspAI GTTAAC 1 cut(s) 504
Kzo9I GATC 3 cut(s) 316, 638, 746
LmnI GCTCC 3 cut(s) 94, 382, 602
Lsp1109I GCAGC 1 cut(s) 592
LweI GCATC 3 cut(s) 340, 364, 394
MabI ACCWGGT 1 cut(s) 544
MaeI CTAG 1 cut(s) 420
MaeII ACGT 1 cut(s) 8
MaeIII GTNAC 4 cut(s) 4, 218, 287, 440
MalI GATC 3 cut(s) 318, 640, 748
MboI GATC 3 cut(s) 316, 638, 746
MboII GAAGA 1 cut(s) 624
MflI RGATCY 1 cut(s) 746
MluCI AATT 5 cut(s) 18, 28, 195, 226, 586
MlyI GAGTC 2 cut(s) 451, 513
MnlI CCTC 3 cut(s) 150, 608, 724
MseI TTAA 4 cut(s) 41, 164, 362, 503
MslI CAYNNNNRTG 1 cut(s) 273
MspR9I CCNGG 2 cut(s) 454, 546
MvaI CCWGG 2 cut(s) 454, 546
MwoI GCNNNNNNNGC 2 cut(s) 71, 167
NcoI CCATGG 1 cut(s) 497
NdeII GATC 3 cut(s) 316, 638, 746
NlaIII CATG 4 cut(s) 272, 338, 501, 555
NspI RCATGY 1 cut(s) 272
PagI TCATGA 1 cut(s) 334
PcsI WCGNNNNNNNCGW 1 cut(s) 73
PfeI GAWTC 4 cut(s) 571, 624, 646, 676
PkrI GCNGC 1 cut(s) 607
PleI GAGTC 2 cut(s) 451, 513
PpsI GAGTC 2 cut(s) 451, 513
Ppu21I YACGTR 1 cut(s) 9
PshAI GACNNNNGTC 1 cut(s) 128
Psp6I CCWGG 2 cut(s) 452, 544
PspGI CCWGG 2 cut(s) 452, 544
PstNI CAGNNNCTG 2 cut(s) 236, 413
PsuI RGATCY 1 cut(s) 746
RsaI GTAC 2 cut(s) 111, 550
RsaNI GTAC 2 cut(s) 110, 549
RseI CAYNNNNRTG 1 cut(s) 273
SaqAI TTAA 4 cut(s) 41, 164, 362, 503
SatI GCNGC 1 cut(s) 606
Sau3AI GATC 3 cut(s) 316, 638, 746
SchI GAGTC 2 cut(s) 451, 513
ScrFI CCNGG 2 cut(s) 454, 546
SetI ASST 8 cut(s) 11, 76, 172, 397, 550, 607, 619, 686
SexAI ACCWGGT 1 cut(s) 544
SfaNI GCATC 3 cut(s) 340, 364, 394
SfcI CTRYAG 1 cut(s) 654
SmiMI CAYNNNNRTG 1 cut(s) 273
Sse9I AATT 5 cut(s) 18, 28, 195, 226, 586
SsiI CCGC 1 cut(s) 533
SspMI CTAG 1 cut(s) 420
StyD4I CCNGG 2 cut(s) 452, 544
StyI CCWWGG 2 cut(s) 497, 680
TaaI ACNGT 3 cut(s) 127, 245, 658
TaiI ACGT 1 cut(s) 11
TaqI TCGA 1 cut(s) 739
TasI AATT 5 cut(s) 18, 28, 195, 226, 586
TfiI GAWTC 4 cut(s) 571, 624, 646, 676
Tru1I TTAA 4 cut(s) 41, 164, 362, 503
Tru9I TTAA 4 cut(s) 41, 164, 362, 503
TscAI CASTG 3 cut(s) 237, 648, 663
TseI GCWGC 1 cut(s) 605
TspDTI ATGAA 1 cut(s) 162
TspGWI ACGGA 1 cut(s) 275
TspRI CASTG 3 cut(s) 237, 648, 663
XceI RCATGY 1 cut(s) 272
XcmI CCANNNNNNNNNTGG 1 cut(s) 289
XmiI GTMKAC 1 cut(s) 696
XspI CTAG 1 cut(s) 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.