MD01G1070500.v1.1

Ring finger

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
Physical Location & Seq
Reverse (-)
17516546 .. 17520338
3793 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1070500.v1.1.491

Sequence Viewer

Length: 1251 bp
ATGGTGCATTGCGGCCGCGGCCGCGGCGAAGGCGACGGCCTTACCAAAACCATTTGCTCACTCTGCTGCAAAGACTTCGATCCCGTTGTCGAGGACCTCCAAGTCATCTCAATCTGCGGCCATGTCTTCCACGAGCTCTGTCTGCAAGAGTCGTTCGGATACTATGCGACCAAAAAGAGGAACAGTTGCCCGGTTTGCAAACAGAGTTGCAACCTGAACGACGTTGTCCGGGTTTATTTTCAATGGGCGGATCCGAATCTCAGTCAGAGTCAGAATCAGAGGTCGAGTGTCGGATGCGAGGAAGACTCCGAGGCGCTGCGGCAAGAGGTGAGGAGGTTGGAGGCCGTGGCGCTAGGGCTTGCTTCGGATTTGGAGCTCAAGGAGGAGGAGCTCAAATTGGTCAAAGAAGAGCTTTGTCAATCCAAGGTGCAGGCAAGGATAGAAGTTGCATTAAAGAATGAAGCCTTGAAACAGCGTACATCTACGCAACAGCAGCTTCAAATGAAATCTGAGGAATTTGATAAATTGACTTTGGAGTGTTTAAGGTTGCGAGAAAGAAATAAGGCATTGGACAAAGAGCTTGCAGTGGTCAAATTGGTATCTGATCTAGATCTGGATAAAGAGGAGGTCTCAAAGCTTGCCACTTTTGGTGATGGGGCCAACAACAAAGACACAATAGATGTTTTAAGCATTTCCGTGGCAATGTCTAATAGGAGTTGCAAGGAATGGATGAACAAATGTGATCTTCTTGAACGAAAAGAAGCTCGTTACAGTAAAAAACTAGAGAAGGCTAAAAGAAAGATAAATAAGTGGAAGACGAAGGCACAAGATTTGGAGACTGCTGTTGAAGTAAAGAGTACTGAACTTTTGAAGGCTTTAAAAGCTTTAAAGAAAGCTTCAAAGAAAGCTGGAGTGGCAGCTGCTGAAACAAAGAAAGAAACTTCAGTCCATGGGCTAAGGAATCTGGCTGAGTCGCTGGGTTTATCAACTGGTACATGTAATGATCCTGCCAAGACTCCAGCTTCTGATATTGCTGAAGTTGTGATTATTGACGACGATGAACAAGTTCAACCGACGCTGAACATCAAAAGGGAATGTCGTGTTCCACAACCACTTCCCAGACCAGGGGATGTGTGTTTTTCTAGTGGCTTGCTCGGCCCTGATGGCACAAACAGGTATTTAGGTAAATGGTGCAAGCGGAGGAATAAGAATGGATCGGCAATAACGCAAGATCCAATACCTATGAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

417

Amino Acids

46.42

Weight (kDa)

8.31

Isoelectric Point (pI)

51.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 101
AccII CGCG 2 cut(s) 18, 24
AciI CCGC 9 cut(s) 12, 16, 18, 22, 24, 117, 248, 319, 1198
AclWI GGATC 6 cut(s) 74, 245, 258, 998, 1222, 1226
AcoI YGGCCR 3 cut(s) 13, 19, 118
AcsI RAATTY 1 cut(s) 515
AcuI CTGAAG 2 cut(s) 927, 1056
AfaI GTAC 3 cut(s) 478, 859, 994
AfiI CCNNNNNNNGG 3 cut(s) 177, 1124, 1125
AflIII ACRYGT 1 cut(s) 995
AgsI TTSAA 8 cut(s) 242, 469, 500, 752, 848, 871, 900, 1070
AjnI CCWGG 1 cut(s) 1123
Alw21I GWGCWC 3 cut(s) 138, 378, 393
Alw26I GTCTC 2 cut(s) 634, 830
AlwI GGATC 6 cut(s) 74, 245, 258, 998, 1222, 1226
AlwNI CAGNNNCTG 2 cut(s) 923, 1025
AoxI GGCC 7 cut(s) 13, 19, 37, 118, 342, 657, 1156
ApeKI GCWGC 5 cut(s) 66, 316, 493, 917, 920
ApoI RAATTY 1 cut(s) 515
Asp700I GAANNNNTTC 1 cut(s) 1065
AspLEI GCGC 2 cut(s) 316, 352
AspS9I GGNCC 3 cut(s) 94, 657, 1157
AsuC2I CCSGG 2 cut(s) 191, 230
AsuHPI GGTGA 2 cut(s) 340, 662
AvaII GGWCC 1 cut(s) 94
BamHI GGATCC 1 cut(s) 250
BanII GRGCYC 3 cut(s) 138, 378, 393
BauI CACGAG 1 cut(s) 131
BbsI GAAGAC 3 cut(s) 118, 309, 821
Bbv12I GWGCWC 3 cut(s) 138, 378, 393
BbvI GCAGC 5 cut(s) 53, 303, 505, 907, 929
BccI CCATC 2 cut(s) 647, 1157
BceAI ACGGC 2 cut(s) 52, 329
BcgI CGANNNNNNTGC 2 cut(s) 58, 92
BciT130I CCWGG 1 cut(s) 1125
BciVI GTATCC 1 cut(s) 152
BcnI CCSGG 2 cut(s) 191, 230
BcoDI GTCTC 2 cut(s) 634, 830
BfaI CTAG 4 cut(s) 353, 608, 782, 1143
BfoI RGCGCY 2 cut(s) 317, 353
BfuI GTATCC 1 cut(s) 152
BglI GCCNNNNNGGC 1 cut(s) 1164
BglII AGATCT 1 cut(s) 610
BmcAI AGTACT 1 cut(s) 859
Bme1390I CCNGG 3 cut(s) 191, 230, 1125
Bme18I GGWCC 1 cut(s) 94
BmgT120I GGNCC 3 cut(s) 94, 657, 1157
BmiI GGNNCC 2 cut(s) 252, 658
BmrFI CCNGG 3 cut(s) 191, 230, 1125
BmsI GCATC 1 cut(s) 284
BpiI GAAGAC 3 cut(s) 118, 309, 821
BplI GAGNNNNNCTC 4 cut(s) 290, 322, 614, 646
BpmI CTGGAG 2 cut(s) 930, 1002
Bpu10I CCTNAGC 1 cut(s) 956
BpuEI CTTGAG 1 cut(s) 362
BpuMI CCSGG 2 cut(s) 191, 230
BsaBI GATNNNNATC 2 cut(s) 255, 609
BsaI GGTCTC 1 cut(s) 634
BsaJI CCNNGG 8 cut(s) 16, 22, 309, 345, 423, 696, 949, 1124
Bsc4I CCNNNNNNNGG 3 cut(s) 177, 1124, 1125
Bse1I ACTGG 1 cut(s) 994
Bse3DI GCAATG 2 cut(s) 7, 708
Bse8I GATNNNNATC 2 cut(s) 255, 609
BseBI CCWGG 1 cut(s) 1125
BseDI CCNNGG 8 cut(s) 16, 22, 309, 345, 423, 696, 949, 1124
BseGI GGATG 3 cut(s) 299, 735, 1135
BseJI GATNNNNATC 2 cut(s) 255, 609
BseLI CCNNNNNNNGG 3 cut(s) 177, 1124, 1125
BseMI GCAATG 2 cut(s) 7, 708
BseMII CTCAG 3 cut(s) 274, 501, 960
BseNI ACTGG 1 cut(s) 994
BseRI GAGGAG 4 cut(s) 346, 398, 401, 638
BseX3I CGGCCG 2 cut(s) 13, 19
BseXI GCAGC 5 cut(s) 53, 303, 505, 907, 929
BseYI CCCAGC 1 cut(s) 976
BsgI GTGCAG 1 cut(s) 449
Bsh1236I CGCG 2 cut(s) 18, 24
Bsh1285I CGRYCG 2 cut(s) 16, 22
BshFI GGCC 7 cut(s) 15, 21, 39, 120, 344, 659, 1158
BsiEI CGRYCG 2 cut(s) 16, 22
BsiHKAI GWGCWC 3 cut(s) 138, 378, 393
BsiSI CCGG 2 cut(s) 191, 229
BslI CCNNNNNNNGG 3 cut(s) 177, 1124, 1125
BsmAI GTCTC 2 cut(s) 634, 830
BsnI GGCC 7 cut(s) 15, 21, 39, 120, 344, 659, 1158
Bso31I GGTCTC 1 cut(s) 634
Bsp1286I GDGCHC 3 cut(s) 138, 378, 393
Bsp143I GATC 8 cut(s) 79, 250, 604, 610, 742, 1003, 1214, 1231
Bsp19I CCATGG 1 cut(s) 949
BspACI CCGC 9 cut(s) 12, 16, 18, 22, 24, 117, 248, 319, 1198
BspANI GGCC 7 cut(s) 15, 21, 39, 120, 344, 659, 1158
BspCNI CTCAG 3 cut(s) 273, 502, 961
BspFNI CGCG 2 cut(s) 18, 24
BspLI GGNNCC 2 cut(s) 252, 658
BspPI GGATC 6 cut(s) 74, 245, 258, 998, 1222, 1226
BspQI GCTCTTC 1 cut(s) 402
BspTNI GGTCTC 1 cut(s) 634
BsrDI GCAATG 2 cut(s) 7, 708
BsrI ACTGG 1 cut(s) 994
BssECI CCNNGG 8 cut(s) 16, 22, 309, 345, 423, 696, 949, 1124
BssMI GATC 8 cut(s) 79, 250, 604, 610, 742, 1003, 1214, 1231
BssSI CACGAG 1 cut(s) 131
BssT1I CCWWGG 2 cut(s) 423, 949
Bst2BI CACGAG 1 cut(s) 131
Bst2UI CCWGG 1 cut(s) 1125
Bst4CI ACNGT 2 cut(s) 185, 773
Bst6I CTCTTC 1 cut(s) 402
BstC8I GCNNGC 6 cut(s) 360, 432, 582, 639, 1151, 1196
BstDEI CTNAG 4 cut(s) 260, 510, 956, 969
BstDSI CCRYGG 5 cut(s) 16, 22, 345, 696, 949
BstF5I GGATG 3 cut(s) 299, 735, 1135
BstFNI CGCG 2 cut(s) 18, 24
BstH2I RGCGCY 2 cut(s) 317, 353
BstHHI GCGC 2 cut(s) 316, 352
BstKTI GATC 8 cut(s) 82, 253, 607, 613, 745, 1006, 1217, 1234
BstMAI GTCTC 2 cut(s) 634, 830
BstMBI GATC 8 cut(s) 79, 250, 604, 610, 742, 1003, 1214, 1231
BstMCI CGRYCG 2 cut(s) 16, 22
BstNI CCWGG 1 cut(s) 1125
BstNSI RCATGY 1 cut(s) 999
BstSCI CCNGG 3 cut(s) 189, 228, 1123
BstUI CGCG 2 cut(s) 18, 24
BstV1I GCAGC 5 cut(s) 53, 303, 505, 907, 929
BstV2I GAAGAC 3 cut(s) 118, 309, 821
BstX2I RGATCY 3 cut(s) 250, 610, 1231
BstYI RGATCY 3 cut(s) 250, 610, 1231
BstZI CGGCCG 2 cut(s) 13, 19
BsuI GTATCC 1 cut(s) 152
BsuRI GGCC 7 cut(s) 15, 21, 39, 120, 344, 659, 1158
BtgI CCRYGG 5 cut(s) 16, 22, 345, 696, 949
BtsCI GGATG 3 cut(s) 299, 735, 1135
BtsI GCAGTG 1 cut(s) 591
BtsIMutI CAGTG 1 cut(s) 591
Cac8I GCNNGC 6 cut(s) 360, 432, 582, 639, 1151, 1196
CaiI CAGNNNCTG 2 cut(s) 923, 1025
CciNI GCGGCCGC 2 cut(s) 13, 19
CfoI GCGC 2 cut(s) 316, 352
Cfr13I GGNCC 3 cut(s) 94, 657, 1157
Cfr42I CCGCGG 2 cut(s) 19, 25
CseI GACGC 1 cut(s) 1084
Csp6I GTAC 3 cut(s) 477, 858, 993
CviAII CATG 3 cut(s) 122, 950, 996
CviQI GTAC 3 cut(s) 477, 858, 993
DdeI CTNAG 4 cut(s) 260, 510, 956, 969
DpnI GATC 8 cut(s) 81, 252, 606, 612, 744, 1005, 1216, 1233
DpnII GATC 8 cut(s) 79, 250, 604, 610, 742, 1003, 1214, 1231
DraI TTTAAA 2 cut(s) 879, 888
DrdI GACNNNNNNGTC 1 cut(s) 101
DseDI GACNNNNNNGTC 1 cut(s) 101
EaeI YGGCCR 3 cut(s) 13, 19, 118
EagI CGGCCG 2 cut(s) 13, 19
Eam1104I CTCTTC 1 cut(s) 402
EarI CTCTTC 1 cut(s) 402
EciI GGCGGA 1 cut(s) 263
Ecl136II GAGCTC 3 cut(s) 136, 376, 391
EclXI CGGCCG 2 cut(s) 13, 19
Eco130I CCWWGG 2 cut(s) 423, 949
Eco24I GRGCYC 3 cut(s) 138, 378, 393
Eco31I GGTCTC 1 cut(s) 634
Eco47I GGWCC 1 cut(s) 94
Eco52I CGGCCG 2 cut(s) 13, 19
Eco53kI GAGCTC 3 cut(s) 136, 376, 391
Eco57I CTGAAG 2 cut(s) 927, 1056
EcoICRI GAGCTC 3 cut(s) 136, 376, 391
EcoO109I RGGNCCY 1 cut(s) 94
EcoRII CCWGG 1 cut(s) 1123
EcoT14I CCWWGG 2 cut(s) 423, 949
EcoT38I GRGCYC 3 cut(s) 138, 378, 393
ErhI CCWWGG 2 cut(s) 423, 949
FaeI CATG 3 cut(s) 125, 953, 999
FaiI YATR 5 cut(s) 123, 165, 951, 997, 1244
FalI AAGNNNNNCTT 2 cut(s) 396, 428
FatI CATG 3 cut(s) 121, 949, 995
FokI GGATG 3 cut(s) 306, 742, 1142
FriOI GRGCYC 3 cut(s) 138, 378, 393
FspBI CTAG 4 cut(s) 353, 608, 782, 1143
GlaI GCGC 2 cut(s) 315, 351
GsaI CCCAGC 1 cut(s) 980
GsuI CTGGAG 2 cut(s) 930, 1002
HaeII RGCGCY 2 cut(s) 317, 353
HaeIII GGCC 7 cut(s) 15, 21, 39, 120, 344, 659, 1158
HapII CCGG 2 cut(s) 191, 229
HgaI GACGC 1 cut(s) 1084
HhaI GCGC 2 cut(s) 316, 352
Hin1II CATG 3 cut(s) 125, 953, 999
Hin6I GCGC 2 cut(s) 314, 350
HinP1I GCGC 2 cut(s) 314, 350
HindIII AAGCTT 3 cut(s) 635, 882, 894
HinfI GANTC 8 cut(s) 149, 256, 268, 274, 305, 961, 971, 1015
HpaII CCGG 2 cut(s) 191, 229
HphI GGTGA 2 cut(s) 340, 662
Hpy188III TCNNGA 3 cut(s) 608, 614, 749
Hpy99I CGWCG 4 cut(s) 38, 224, 1058, 1078
HpyAV CCTTC 4 cut(s) 23, 781, 814, 865
HpyCH4III ACNGT 2 cut(s) 185, 773
HpyCH4IV ACGT 1 cut(s) 222
HpyF3I CTNAG 4 cut(s) 260, 510, 956, 969
HpySE526I ACGT 1 cut(s) 222
Hsp92II CATG 3 cut(s) 125, 953, 999
HspAI GCGC 2 cut(s) 314, 350
KspI CCGCGG 2 cut(s) 19, 25
Kzo9I GATC 8 cut(s) 79, 250, 604, 610, 742, 1003, 1214, 1231
LguI GCTCTTC 1 cut(s) 402
LmnI GCTCC 2 cut(s) 373, 388
Lsp1109I GCAGC 5 cut(s) 53, 303, 505, 907, 929
LweI GCATC 1 cut(s) 284
MaeI CTAG 4 cut(s) 353, 608, 782, 1143
MaeII ACGT 1 cut(s) 222
MaeIII GTNAC 1 cut(s) 767
MalI GATC 8 cut(s) 81, 252, 606, 612, 744, 1005, 1216, 1233
MboI GATC 8 cut(s) 79, 250, 604, 610, 742, 1003, 1214, 1231
MboII GAAGA 5 cut(s) 118, 314, 419, 737, 826
MflI RGATCY 3 cut(s) 250, 610, 1231
MhlI GDGCHC 3 cut(s) 138, 378, 393
MluCI AATT 4 cut(s) 395, 515, 524, 593
MlyI GAGTC 5 cut(s) 158, 277, 299, 980, 1009
MmeI TCCRAC 2 cut(s) 271, 318
MroXI GAANNNNTTC 1 cut(s) 1065
MseI TTAA 5 cut(s) 452, 542, 686, 878, 887
MslI CAYNNNNRTG 1 cut(s) 695
MspA1I CMGCKG 3 cut(s) 18, 24, 920
MspI CCGG 2 cut(s) 191, 229
MspR9I CCNGG 3 cut(s) 191, 230, 1125
MvaI CCWGG 1 cut(s) 1125
MvnI CGCG 2 cut(s) 18, 24
NciI CCSGG 2 cut(s) 191, 230
NcoI CCATGG 1 cut(s) 949
NdeII GATC 8 cut(s) 79, 250, 604, 610, 742, 1003, 1214, 1231
NlaIII CATG 3 cut(s) 125, 953, 999
NlaIV GGNNCC 2 cut(s) 252, 658
NmeAIII GCCGAG 1 cut(s) 1134
NotI GCGGCCGC 2 cut(s) 13, 19
NspI RCATGY 1 cut(s) 999
PciI ACATGT 1 cut(s) 995
PciSI GCTCTTC 1 cut(s) 402
PdmI GAANNNNTTC 1 cut(s) 1065
PfeI GAWTC 3 cut(s) 256, 274, 961
PflFI GACNNNGTC 1 cut(s) 224
PleI GAGTC 5 cut(s) 157, 276, 299, 979, 1009
PpsI GAGTC 5 cut(s) 157, 276, 299, 979, 1009
PpuMI RGGWCCY 1 cut(s) 94
PscI ACATGT 1 cut(s) 995
Psp124BI GAGCTC 3 cut(s) 138, 378, 393
Psp5II RGGWCCY 1 cut(s) 94
Psp6I CCWGG 1 cut(s) 1123
PspFI CCCAGC 1 cut(s) 976
PspGI CCWGG 1 cut(s) 1123
PspN4I GGNNCC 2 cut(s) 252, 658
PspPI GGNCC 3 cut(s) 94, 657, 1157
PspPPI RGGWCCY 1 cut(s) 94
PstNI CAGNNNCTG 2 cut(s) 923, 1025
PsuI RGATCY 3 cut(s) 250, 610, 1231
PsyI GACNNNGTC 1 cut(s) 224
PvuII CAGCTG 1 cut(s) 920
RsaI GTAC 3 cut(s) 478, 859, 994
RsaNI GTAC 3 cut(s) 477, 858, 993
RseI CAYNNNNRTG 1 cut(s) 695
SacI GAGCTC 3 cut(s) 138, 378, 393
SacII CCGCGG 2 cut(s) 19, 25
SapI GCTCTTC 1 cut(s) 402
SaqAI TTAA 5 cut(s) 452, 542, 686, 878, 887
Sau3AI GATC 8 cut(s) 79, 250, 604, 610, 742, 1003, 1214, 1231
Sau96I GGNCC 3 cut(s) 94, 657, 1157
ScaI AGTACT 1 cut(s) 859
SchI GAGTC 5 cut(s) 158, 277, 299, 980, 1009
ScrFI CCNGG 3 cut(s) 191, 230, 1125
SduI GDGCHC 3 cut(s) 138, 378, 393
SfaNI GCATC 1 cut(s) 284
Sfr303I CCGCGG 2 cut(s) 19, 25
SgrBI CCGCGG 2 cut(s) 19, 25
SinI GGWCC 1 cut(s) 94
SmiMI CAYNNNNRTG 1 cut(s) 695
SmlI CTYRAG 1 cut(s) 377
SmoI CTYRAG 1 cut(s) 377
Sse9I AATT 4 cut(s) 395, 515, 524, 593
SsiI CCGC 9 cut(s) 12, 16, 18, 22, 24, 117, 248, 319, 1198
SspMI CTAG 4 cut(s) 353, 608, 782, 1143
SstI GAGCTC 3 cut(s) 138, 378, 393
StyD4I CCNGG 3 cut(s) 189, 228, 1123
StyI CCWWGG 2 cut(s) 423, 949
TaaI ACNGT 2 cut(s) 185, 773
TaiI ACGT 1 cut(s) 225
TaqI TCGA 3 cut(s) 78, 90, 284
TasI AATT 4 cut(s) 395, 515, 524, 593
TatI WGTACW 1 cut(s) 857
TauI GCSGC 7 cut(s) 15, 18, 21, 24, 27, 120, 322
TfiI GAWTC 3 cut(s) 256, 274, 961
Tru1I TTAA 5 cut(s) 452, 542, 686, 878, 887
Tru9I TTAA 5 cut(s) 452, 542, 686, 878, 887
TscAI CASTG 1 cut(s) 591
TseI GCWGC 5 cut(s) 66, 316, 493, 917, 920
TspDTI ATGAA 4 cut(s) 474, 518, 746, 1074
TspGWI ACGGA 1 cut(s) 685
TspRI CASTG 1 cut(s) 591
Tth111I GACNNNGTC 1 cut(s) 224
VpaK11BI GGWCC 1 cut(s) 94
XapI RAATTY 1 cut(s) 515
XbaI TCTAGA 1 cut(s) 607
XceI RCATGY 1 cut(s) 999
XmnI GAANNNNTTC 1 cut(s) 1065
XspI CTAG 4 cut(s) 353, 608, 782, 1143
ZrmI AGTACT 1 cut(s) 859
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.