Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005791.1

Orthogroup ID

OG0001668

Physical Location & Seq

Genomic Coordinates Forward (+)

123959 .. 127587

Gene Structure 3629 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005791.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1596 bp

atggtcaattgcgaccaccaccacgactctagcttcagcaaagccatctgctcaatctgccacaaagacctcgagcccttcctcgaggacctccaagccatcttcatctgcggccacgtcttccacgagttctgcttgcaagagtccttcggcttctttgagagcgtcaagaggtacagctgtccggtgtgcaaacagcgatgcaagccgaacgacgtcgctcggctctatttcgagtcggtgggcatctcgccggagtcgccgagtttgactcggtcgccgataggggaagattccgaggcattgcgtcgtgaggtcaaagagcttaaagaggagctttatttatgcaaggagcaagcaaagaaagaagtggctaatttaaagaatgaagctttgaaacaacgagcatctatacaacagatgcttcatatgaaaactgaggcgcttgataaattgactgtggagtgcttgaggcagcaagaaaggaatagggcattgaccaaagagcttgcagctttcaaattggcatctgatctagatctcgatgaaaaggagattatgaatcttgccgcacttggtgatgggggaaacaatgaaaacacaatagatgttcttagaaaatccttgattatgagtaataggaatcgcaaagaactgatagcccagtgcaatcttcttgaacaaggagatgctcttcaccttaaaaaactagagaaggctaaaggaaagataaatagattaaatacaaaggtacaggaactgacagaccagtgcaatcttcttggacgaggtgaggctcgttatagtagaaagctagagaaggctaaaggaaagataaacaaattgaagacaaaggtacagaaactgaaggaccaatgcaatcttcttgaacaaggtgaggctcgtcacagtagaaagctagagaaggctaaagggaagataaatacattgaaggcaaaggtactagaatttgatggtgctgttgaagtagagaaagaaacttcagtccttggaccaagtgatctgtttgagagtatggttcccgtgagtggtacctgtaatgatactgccaaagctcctgctgatgatattgcagatgttctgatccttgacgatgttaaacaagtccaatccatgcttaacattacaaaggaatctccaatcacccagccacttgccagaccagatgctgtgattcttgatgatctcaaccaagttcaacccatgcttaatagtagcaaggaatctccaattagacaaccacttctcagaccagtgagtgcatatttctctggtggcttggttggtcctgatggaacaaaaagatttttaggtaaatggtgcaagcggcgcgagaacaatcaattggtaacaaataaatattcaagtacagatgctggctgttcgattgttgtagtatctgatgaagaggatattaccgagaatataccgcaggtaaagaggagcaagtatgaagacaagtcaaaaattgtacagtcccaagggtgcttgcagtacaacacttctttggaagggtcgaggaacttgcttatgcgagagcaaaaattcatttgtgatatcgcaatagccgaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00053 ko01100 map00053 map01100

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

531

Amino Acids

59.76

Weight (kDa)

7.99

Isoelectric Point (pI)

45.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001668)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01245 AT4G01270
fragaria_vesca	FvH4_1g19860 FvH4_1g19860 FvH4_1g19860 FvH4_1g19860 FvH4_7g15320 FvH4_7g15320 FvH4_7g15320 FvH4_7g15320 FvH4_7g15320
malus_domestica	MD01G1070500.v1.1 MD01G1070600.v1.1 MD01G1071100.v1.1
prunus_persica	Prupe.2G177000_v2.0.a1 Prupe.2G177000_v2.0.a1 Prupe.2G177000_v2.0.a1 Prupe.2G177000_v2.0.a1 Prupe.2G177000_v2.0.a1 Prupe.2G177000_v2.0.a1 Prupe.2G177000_v2.0.a1 Prupe.2G177000_v2.0.a1 Prupe.2G177000_v2.0.a1 Prupe.2G177100_v2.0.a1 Prupe.2G177100_v2.0.a1
pyrus_communis	pycom01g09970 pycom01g10000 pycom07g12860
rosa_chinensis	RchiOBHm_Chr1g0357651 RchiOBHm_Chr2g0111671
rosa_laevigata	RLG00000017916 RLG00000028011
rosa_multiflora	Rmu_sc0004683.1_g000004 Rmu_sc0005791.1_g000023
rosa_roxburghii	Rroxscaffold_2G00132180 Rroxscaffold_4G00298670
rosa_rugosa	Rorug01G0257400 Rorug02G0175300 Rorug02G0175400
rosa_samantha	Rh1AG271400 Rh1BG238300 Rh1CG255200 Rh1DG266600 Rh2AG228300 Rh2BG240500 Rh2CG231700 Rh2DG236300
rosa_wichuraiana	Rw1G024190 Rw2G017620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	219
AbsI	CCTCGAGG	1 cut(s)	83
Acc36I	ACCTGC	1 cut(s)	1444
Acc65I	GGTACC	1 cut(s)	1052
AccB1I	GGYRCC	1 cut(s)	1052
AccII	CGCG	1 cut(s)	1353
AciI	CCGC	4 cut(s)	111, 570, 1348, 1451
AclWI	GGATC	1 cut(s)	1099
AcoI	YGGCCR	1 cut(s)	112
AcsI	RAATTY	2 cut(s)	968, 1565
AcuI	CTGAAG	3 cut(s)	19, 887, 987
AcyI	GRCGYC	1 cut(s)	216
AdeI	CACNNNGTG	1 cut(s)	578
AfaI	GTAC	8 cut(s)	176, 753, 858, 963, 1054, 1390, 1494, 1517
AfiI	CCNNNNNNNGG	1 cut(s)	1049
AgsI	TTSAA	9 cut(s)	397, 520, 680, 847, 890, 952, 986, 1220, 1386
AjiI	CACGTC	1 cut(s)	118
AjuI	GAANNNNNNNTTGG	4 cut(s)	867, 899, 1349, 1381
AlwI	GGATC	1 cut(s)	1099
AlwNI	CAGNNNCTG	4 cut(s)	760, 865, 1190, 1397
Ama87I	CYCGRG	2 cut(s)	71, 83
AoxI	GGCC	1 cut(s)	112
ApeKI	GCWGC	2 cut(s)	475, 512
ApoI	RAATTY	2 cut(s)	968, 1565
Asp718I	GGTACC	1 cut(s)	1052
AspLEI	GCGC	2 cut(s)	445, 1353
AspS9I	GGNCC	4 cut(s)	88, 871, 1013, 1307
AsuHPI	GGTGA	5 cut(s)	590, 689, 803, 908, 1156
AvaI	CYCGRG	2 cut(s)	71, 83
AvaII	GGWCC	4 cut(s)	88, 871, 1013, 1307
BaeI	ACNNNNGTAYC	2 cut(s)	166, 199
BanI	GGYRCC	1 cut(s)	1052
BanII	GRGCYC	1 cut(s)	78
BauI	CACGAG	1 cut(s)	125
BbsI	GAAGAC	3 cut(s)	112, 854, 1482
BbvI	GCAGC	2 cut(s)	487, 524
BccI	CCATC	5 cut(s)	53, 107, 575, 968, 1307
BcgI	CGANNNNNNTGC	2 cut(s)	1528, 1562
BfaI	CTAG	6 cut(s)	30, 536, 710, 815, 920, 965
BfoI	RGCGCY	1 cut(s)	446
BfuAI	ACCTGC	1 cut(s)	1444
BglII	AGATCT	1 cut(s)	538
BisI	GCNGC	5 cut(s)	112, 476, 513, 570, 1349
BlsI	GCNGC	5 cut(s)	113, 477, 514, 571, 1350
Bme18I	GGWCC	4 cut(s)	88, 871, 1013, 1307
BmeT110I	CYCGRG	2 cut(s)	71, 83
BmgBI	CACGTC	1 cut(s)	118
BmgT120I	GGNCC	4 cut(s)	88, 871, 1013, 1307
BmiI	GGNNCC	2 cut(s)	1041, 1054
BmrI	ACTGGG	1 cut(s)	658
BmsI	GCATC	8 cut(s)	191, 255, 411, 416, 536, 679, 1177, 1384
BmuI	ACTGGG	1 cut(s)	658
BpiI	GAAGAC	3 cut(s)	112, 854, 1482
BplI	GAGNNNNNCTC	2 cut(s)	256, 288
BpuEI	CTTGAG	1 cut(s)	490
BsaBI	GATNNNNATC	1 cut(s)	537
BsaHI	GRCGYC	1 cut(s)	216
BsaJI	CCNNGG	3 cut(s)	297, 1009, 1501
BsaWI	WCCGGW	1 cut(s)	184
Bsc4I	CCNNNNNNNGG	1 cut(s)	1049
Bse1I	ACTGG	3 cut(s)	664, 769, 1274
Bse3DI	GCAATG	1 cut(s)	302
Bse8I	GATNNNNATC	1 cut(s)	537
BseDI	CCNNGG	3 cut(s)	297, 1009, 1501
BseJI	GATNNNNATC	1 cut(s)	537
BseLI	CCNNNNNNNGG	1 cut(s)	1049
BseMI	GCAATG	1 cut(s)	302
BseMII	CTCAG	2 cut(s)	429, 1282
BseNI	ACTGG	3 cut(s)	664, 769, 1274
BseRI	GAGGAG	2 cut(s)	347, 1477
BseXI	GCAGC	2 cut(s)	487, 524
BseYI	CCCAGC	1 cut(s)	1167
Bsh1236I	CGCG	1 cut(s)	1353
Bsh1285I	CGRYCG	1 cut(s)	278
BshFI	GGCC	1 cut(s)	114
BshNI	GGYRCC	1 cut(s)	1052
BsiEI	CGRYCG	1 cut(s)	278
BsiHKCI	CYCGRG	2 cut(s)	71, 83
BsiSI	CCGG	2 cut(s)	185, 254
BslFI	GGGAC	1 cut(s)	1483
BslI	CCNNNNNNNGG	1 cut(s)	1049
BsmFI	GGGAC	1 cut(s)	1483
BsnI	GGCC	1 cut(s)	114
BsoBI	CYCGRG	2 cut(s)	71, 83
Bsp1286I	GDGCHC	1 cut(s)	78
Bsp1407I	TGTACA	1 cut(s)	1492
Bsp143I	GATC	5 cut(s)	532, 538, 1021, 1104, 1204
BspACI	CCGC	4 cut(s)	111, 570, 1348, 1451
BspANI	GGCC	1 cut(s)	114
BspCNI	CTCAG	2 cut(s)	430, 1281
BspFNI	CGCG	1 cut(s)	1353
BspLI	GGNNCC	2 cut(s)	1041, 1054
BspMI	ACCTGC	1 cut(s)	1444
BspPI	GGATC	1 cut(s)	1099
BspQI	GCTCTTC	1 cut(s)	699
BspT107I	GGYRCC	1 cut(s)	1052
BsrDI	GCAATG	1 cut(s)	302
BsrGI	TGTACA	1 cut(s)	1492
BsrI	ACTGG	3 cut(s)	664, 769, 1274
BssECI	CCNNGG	3 cut(s)	297, 1009, 1501
BssMI	GATC	5 cut(s)	532, 538, 1021, 1104, 1204
BssNI	GRCGYC	1 cut(s)	216
BssSI	CACGAG	1 cut(s)	125
BssT1I	CCWWGG	2 cut(s)	1009, 1501
Bst2BI	CACGAG	1 cut(s)	125
Bst4CI	ACNGT	3 cut(s)	460, 911, 1497
Bst6I	CTCTTC	2 cut(s)	699, 1422
BstACI	GRCGYC	1 cut(s)	216
BstAUI	TGTACA	1 cut(s)	1492
BstC8I	GCNNGC	7 cut(s)	137, 206, 357, 510, 1346, 1399, 1511
BstDEI	CTNAG	3 cut(s)	438, 614, 1268
BstFNI	CGCG	1 cut(s)	1353
BstH2I	RGCGCY	1 cut(s)	446
BstHHI	GCGC	2 cut(s)	445, 1353
BstKTI	GATC	5 cut(s)	535, 541, 1024, 1107, 1207
BstMBI	GATC	5 cut(s)	532, 538, 1021, 1104, 1204
BstMCI	CGRYCG	1 cut(s)	278
BstMWI	GCNNNNNNNGC	4 cut(s)	57, 205, 259, 1350
BstUI	CGCG	1 cut(s)	1353
BstV1I	GCAGC	2 cut(s)	487, 524
BstV2I	GAAGAC	3 cut(s)	112, 854, 1482
BstX2I	RGATCY	1 cut(s)	538
BstYI	RGATCY	1 cut(s)	538
BsuRI	GGCC	1 cut(s)	114
BtgZI	GCGATG	1 cut(s)	214
BtrI	CACGTC	1 cut(s)	118
BtsIMutI	CAGTG	3 cut(s)	671, 776, 1281
BveI	ACCTGC	1 cut(s)	1444
Cac8I	GCNNGC	7 cut(s)	137, 206, 357, 510, 1346, 1399, 1511
CaiI	CAGNNNCTG	4 cut(s)	760, 865, 1190, 1397
CfoI	GCGC	2 cut(s)	445, 1353
Cfr13I	GGNCC	4 cut(s)	88, 871, 1013, 1307
CseI	GACGC	2 cut(s)	154, 296
Csp6I	GTAC	8 cut(s)	175, 752, 857, 962, 1053, 1389, 1493, 1516
CviAII	CATG	2 cut(s)	1135, 1225
CviQI	GTAC	8 cut(s)	175, 752, 857, 962, 1053, 1389, 1493, 1516
DdeI	CTNAG	3 cut(s)	438, 614, 1268
DpnI	GATC	5 cut(s)	534, 540, 1023, 1106, 1206
DpnII	GATC	5 cut(s)	532, 538, 1021, 1104, 1204
DraI	TTTAAA	1 cut(s)	381
DraIII	CACNNNGTG	1 cut(s)	578
EaeI	YGGCCR	1 cut(s)	112
Eam1104I	CTCTTC	2 cut(s)	699, 1422
EarI	CTCTTC	2 cut(s)	699, 1422
Eco130I	CCWWGG	2 cut(s)	1009, 1501
Eco24I	GRGCYC	1 cut(s)	78
Eco32I	GATATC	1 cut(s)	1579
Eco47I	GGWCC	4 cut(s)	88, 871, 1013, 1307
Eco57I	CTGAAG	3 cut(s)	19, 887, 987
Eco88I	CYCGRG	2 cut(s)	71, 83
EcoO109I	RGGNCCY	1 cut(s)	88
EcoRV	GATATC	1 cut(s)	1579
EcoT14I	CCWWGG	2 cut(s)	1009, 1501
EcoT38I	GRGCYC	1 cut(s)	78
ErhI	CCWWGG	2 cut(s)	1009, 1501
FaeI	CATG	2 cut(s)	1138, 1228
FalI	AAGNNNNNCTT	2 cut(s)	321, 353
FaqI	GGGAC	1 cut(s)	1483
FatI	CATG	2 cut(s)	1134, 1224
FauNDI	CATATG	1 cut(s)	429
Fnu4HI	GCNGC	5 cut(s)	112, 476, 513, 570, 1349
FriOI	GRGCYC	1 cut(s)	78
Fsp4HI	GCNGC	5 cut(s)	112, 476, 513, 570, 1349
FspBI	CTAG	6 cut(s)	30, 536, 710, 815, 920, 965
GlaI	GCGC	2 cut(s)	444, 1352
GluI	GCNGC	5 cut(s)	112, 476, 513, 570, 1349
GsaI	CCCAGC	1 cut(s)	1171
HaeII	RGCGCY	1 cut(s)	446
HaeIII	GGCC	1 cut(s)	114
HapII	CCGG	2 cut(s)	185, 254
HgaI	GACGC	2 cut(s)	154, 296
HhaI	GCGC	2 cut(s)	445, 1353
Hin1I	GRCGYC	1 cut(s)	216
Hin1II	CATG	2 cut(s)	1138, 1228
Hin6I	GCGC	2 cut(s)	443, 1351
HinP1I	GCGC	2 cut(s)	443, 1351
HindIII	AAGCTT	1 cut(s)	390
HpaII	CCGG	2 cut(s)	185, 254
HphI	GGTGA	5 cut(s)	590, 689, 803, 908, 1156
Hpy188I	TCNGA	5 cut(s)	298, 532, 1104, 1271, 1423
Hpy188III	TCNNGA	8 cut(s)	169, 311, 536, 542, 677, 887, 1199, 1310
Hpy99I	CGWCG	3 cut(s)	218, 221, 312
HpyAV	CCTTC	8 cut(s)	88, 157, 709, 814, 862, 919, 946, 1526
HpyCH4III	ACNGT	3 cut(s)	460, 911, 1497
HpyCH4IV	ACGT	2 cut(s)	117, 216
HpyF10VI	GCNNNNNNNGC	4 cut(s)	57, 205, 259, 1350
HpyF3I	CTNAG	3 cut(s)	438, 614, 1268
HpySE526I	ACGT	2 cut(s)	117, 216
Hsp92I	GRCGYC	1 cut(s)	216
Hsp92II	CATG	2 cut(s)	1138, 1228
HspAI	GCGC	2 cut(s)	443, 1351
KpnI	GGTACC	1 cut(s)	1056
Kzo9I	GATC	5 cut(s)	532, 538, 1021, 1104, 1204
LguI	GCTCTTC	1 cut(s)	699
LmnI	GCTCC	4 cut(s)	334, 352, 1081, 1464
Lsp1109I	GCAGC	2 cut(s)	487, 524
LweI	GCATC	8 cut(s)	191, 255, 411, 416, 536, 679, 1177, 1384
MaeI	CTAG	6 cut(s)	30, 536, 710, 815, 920, 965
MaeII	ACGT	2 cut(s)	117, 216
MaeIII	GTNAC	2 cut(s)	905, 1369
MalI	GATC	5 cut(s)	534, 540, 1023, 1106, 1206
MboI	GATC	5 cut(s)	532, 538, 1021, 1104, 1204
MfeI	CAATTG	2 cut(s)	7, 1364
MflI	RGATCY	1 cut(s)	538
MhlI	GDGCHC	1 cut(s)	78
MlyI	GAGTC	5 cut(s)	20, 152, 245, 265, 266
MseI	TTAA	7 cut(s)	327, 380, 702, 740, 1119, 1140, 1230
MspA1I	CMGCKG	1 cut(s)	180
MspI	CCGG	2 cut(s)	185, 254
MunI	CAATTG	2 cut(s)	7, 1364
MvnI	CGCG	1 cut(s)	1353
MwoI	GCNNNNNNNGC	4 cut(s)	57, 205, 259, 1350
NdeI	CATATG	1 cut(s)	429
NdeII	GATC	5 cut(s)	532, 538, 1021, 1104, 1204
NlaIII	CATG	2 cut(s)	1138, 1228
NlaIV	GGNNCC	2 cut(s)	1041, 1054
NmeAIII	GCCGAG	2 cut(s)	202, 288
NmuCI	GTSAC	1 cut(s)	905
PaeR7I	CTCGAG	2 cut(s)	71, 83
PciSI	GCTCTTC	1 cut(s)	699
PcsI	WCGNNNNNNNCGW	2 cut(s)	123, 1587
PfeI	GAWTC	6 cut(s)	293, 562, 643, 1154, 1195, 1244
PflFI	GACNNNGTC	1 cut(s)	274
PkrI	GCNGC	5 cut(s)	113, 477, 514, 571, 1350
PleI	GAGTC	5 cut(s)	20, 151, 244, 265, 265
PpsI	GAGTC	5 cut(s)	20, 151, 244, 265, 265
PpuMI	RGGWCCY	1 cut(s)	88
Psp5II	RGGWCCY	1 cut(s)	88
PspFI	CCCAGC	1 cut(s)	1167
PspN4I	GGNNCC	2 cut(s)	1041, 1054
PspPI	GGNCC	4 cut(s)	88, 871, 1013, 1307
PspPPI	RGGWCCY	1 cut(s)	88
PspXI	VCTCGAGB	2 cut(s)	71, 83
PstNI	CAGNNNCTG	4 cut(s)	760, 865, 1190, 1397
PsuI	RGATCY	1 cut(s)	538
PsyI	GACNNNGTC	1 cut(s)	274
PvuII	CAGCTG	1 cut(s)	180
RsaI	GTAC	8 cut(s)	176, 753, 858, 963, 1054, 1390, 1494, 1517
RsaNI	GTAC	8 cut(s)	175, 752, 857, 962, 1053, 1389, 1493, 1516
SapI	GCTCTTC	1 cut(s)	699
SaqAI	TTAA	7 cut(s)	327, 380, 702, 740, 1119, 1140, 1230
SatI	GCNGC	5 cut(s)	112, 476, 513, 570, 1349
Sau3AI	GATC	5 cut(s)	532, 538, 1021, 1104, 1204
Sau96I	GGNCC	4 cut(s)	88, 871, 1013, 1307
SchI	GAGTC	5 cut(s)	20, 152, 245, 265, 266
SduI	GDGCHC	1 cut(s)	78
SfaNI	GCATC	8 cut(s)	191, 255, 411, 416, 536, 679, 1177, 1384
Sfr274I	CTCGAG	2 cut(s)	71, 83
SinI	GGWCC	4 cut(s)	88, 871, 1013, 1307
SlaI	CTCGAG	2 cut(s)	71, 83
SmlI	CTYRAG	3 cut(s)	71, 83, 469
SmoI	CTYRAG	3 cut(s)	71, 83, 469
SsiI	CCGC	4 cut(s)	111, 570, 1348, 1451
SspI	AATATT	1 cut(s)	1382
SspMI	CTAG	6 cut(s)	30, 536, 710, 815, 920, 965
StyI	CCWWGG	2 cut(s)	1009, 1501
TaaI	ACNGT	3 cut(s)	460, 911, 1497
TaiI	ACGT	2 cut(s)	120, 219
TaqI	TCGA	6 cut(s)	72, 84, 234, 543, 1406, 1538
TaqII	GACCGA	1 cut(s)	264
TatI	WGTACW	3 cut(s)	1388, 1492, 1515
TauI	GCSGC	3 cut(s)	114, 572, 1351
TfiI	GAWTC	6 cut(s)	293, 562, 643, 1154, 1195, 1244
Tru1I	TTAA	7 cut(s)	327, 380, 702, 740, 1119, 1140, 1230
Tru9I	TTAA	7 cut(s)	327, 380, 702, 740, 1119, 1140, 1230
TscAI	CASTG	3 cut(s)	671, 776, 1281
TseFI	GTSAC	1 cut(s)	905
TseI	GCWGC	2 cut(s)	475, 512
Tsp45I	GTSAC	1 cut(s)	905
TspRI	CASTG	3 cut(s)	671, 776, 1281
Tth111I	GACNNNGTC	1 cut(s)	274
VpaK11BI	GGWCC	4 cut(s)	88, 871, 1013, 1307
XapI	RAATTY	2 cut(s)	968, 1565
XbaI	TCTAGA	1 cut(s)	535
XhoI	CTCGAG	2 cut(s)	71, 83
XspI	CTAG	6 cut(s)	30, 536, 710, 815, 920, 965
ZraI	GACGTC	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.