Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002796

Physical Location & Seq

Genomic Coordinates Forward (+)

6483867 .. 6485360

Gene Structure 1494 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G10490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGCAGCATCAAAACTCCTCGTATCCGACATCGCCTCTGTCGTTGATCACGTCCCTTCAAACTACGTCAGACCAGTCTCTGACCGTCCAAAAATGTCCGAGGTTCAAACTTCCGGCGACTCTATTCCTCTAATCGATCTCCACGACCTCCATGGACCTAATCGAGCTGACATTATCAATCAGTTTGCTCATGCATGCTCTTCTTGTGGCTTCTTCCAGATCAAGAACCATGGAGTACCAGAAGAAACGATCAAAAAAATGATGAATGCGGCAAGAGAGTTTTTCCGGCAATCAGAGAGCGAAAGAGTGAAGCATTACTCAGCAGATACCAAAAAGACAACGAGACTCTCCACAAGTTTCAACGTTTCCAAAGAGAAAGTCTCTAACTGGAGAGACTTCCTTCGACTCCATTGCTACCCTATCGAAGATTTCATCAATGAATGGCCCTCAACACCGATCTCTTTCAGAGAAGTCACAGCCGAATACGCTACAAGCGTTAGAGCCTTGGTTCTGACACTTCTTGAGGCAATCTCAGAGAGCTTAGGTCTTGCGAAAGACCGTGTAAGCAATACAATAGGCAAACATGGTCAACACATGGCTATTAACTACTATCCCCGGTGTCCTCAACCAGAGCTAACTTACGGACTTCCGGGGCATAAAGATGCAAACTTGATCACTGTTCTTCTTCAAGATGAAGTCTCTGGTTTACAGGTGTTTAAAGATGGTAAATGGATCGCTGTTAATCCTGTTCCCAACACTTTCATAGTCAACCTTGGTGACCAAATGCAGGTTATAAGCAATGAAAAATACAAGAGTGTTCTTCACAGAGCGGTTGTGAACAGCGACATGGAGCGGATATCGATACCGACATTCTACTGTCCTTCTGAAGATGCTGTGATTAGTCCAGCACAAGAGCTGATCAATGAGGAAGAAGACTCTCCTGCTATTTACAGAAACTTTACATATGCTGAATATTTTGAAAAGTTTTGGGACACAGCATTTGATACTGAGAGCTGTATTGACTCGTTCAAAGCATCCACCGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002229 GO:0002239 GO:0006082 GO:0006725 GO:0006950 GO:0006952 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009056 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009696 GO:0009719 GO:0009725 GO:0009751 GO:0009987 GO:0010033 GO:0010150 GO:0010817 GO:0014070 GO:0016054 GO:0016999 GO:0017001 GO:0017144 GO:0018958 GO:0019336 GO:0019439 GO:0019752 GO:0032501 GO:0032502 GO:0032787 GO:0042221 GO:0042445 GO:0042447 GO:0042493 GO:0042537 GO:0042737 GO:0043207 GO:0043436 GO:0044237 GO:0044248 GO:0044281 GO:0044282 GO:0046244 GO:0046395 GO:0046677 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0065008 GO:0071704 GO:0072329 GO:0090693 GO:0098542 GO:0099402 GO:1901360 GO:1901361 GO:1901575 GO:1901615 GO:1901616 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

348

Amino Acids

39.28

Weight (kDa)

5.5

Isoelectric Point (pI)

43.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	42 - 150	7.1e-27	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	197 - 294	1.3e-37	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10490 AT4G10500
fragaria_vesca	FvH4_5g10430 FvH4_7g17840
malus_domestica	MD01G1090000.v1.1 MD06G1124100.v1.1 MD14G1140400.v1.1 MD14G1140700.v1.1 MD14G1141000.v1.1 MD14G1141200.v1.1
prunus_persica	Prupe.2G199700_v2.0.a1 Prupe.2G200200_v2.0.a1 Prupe.2G200200_v2.0.a1 Prupe.2G200200_v2.0.a1 Prupe.5G134500_v2.0.a1 Prupe.5G134700_v2.0.a1
pyrus_communis	pycom01g11450 pycom06g11450 pycom14g11590
rosa_chinensis	RchiOBHm_Chr1g0361261 RchiOBHm_Chr7g0187801
rosa_laevigata	RLG00000004755 RLG00000027730
rosa_multiflora	Rmu_sc0002119.1_g000038 Rmu_sc0004483.1_g000038
rosa_roxburghii	Rroxscaffold_3G00267060 Rroxscaffold_4G00295120
rosa_rugosa	Rorug01G0287700 Rorug01G0287700 Rorug02G0186700 Rorug06G0484300
rosa_samantha	Rh1AG299000 Rh1BG262900 Rh1CG280300 Rh1DG292900 Rh7CG090300 Rh7DG091900
rosa_wichuraiana	Rw1G026450 Rw7G007720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	794
Acc36I	ACCTGC	1 cut(s)	778
AccBSI	CCGCTC	2 cut(s)	830, 853
AciI	CCGC	4 cut(s)	269, 830, 853, 1041
AclI	AACGTT	1 cut(s)	363
AclWI	GGATC	1 cut(s)	740
AcuI	CTGAAG	1 cut(s)	906
AfaI	GTAC	1 cut(s)	237
AfiI	CCNNNNNNNGG	1 cut(s)	787
AgsI	TTSAA	6 cut(s)	60, 107, 361, 689, 980, 1030
AjiI	CACGTC	1 cut(s)	52
AluBI	AGCT	5 cut(s)	167, 540, 634, 916, 1014
AluI	AGCT	5 cut(s)	167, 540, 634, 916, 1014
Alw26I	GTCTC	5 cut(s)	82, 337, 385, 387, 703
AlwI	GGATC	1 cut(s)	740
AlwNI	CAGNNNCTG	1 cut(s)	80
AoxI	GGCC	1 cut(s)	443
ApeKI	GCWGC	1 cut(s)	5
ArsI	GACNNNNNNTTYG	4 cut(s)	363, 395, 983, 1015
AspS9I	GGNCC	2 cut(s)	155, 444
AsuC2I	CCSGG	2 cut(s)	616, 651
AsuHPI	GGTGA	1 cut(s)	788
AvaII	GGWCC	1 cut(s)	155
BbsI	GAAGAC	1 cut(s)	939
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	1 cut(s)	716
BcgI	CGANNNNNNTGC	2 cut(s)	393, 427
BciVI	GTATCC	1 cut(s)	34
BclI	TGATCA	3 cut(s)	46, 672, 918
BcnI	CCSGG	2 cut(s)	616, 651
BcoDI	GTCTC	5 cut(s)	82, 337, 385, 387, 703
BfuAI	ACCTGC	1 cut(s)	778
BfuI	GTATCC	1 cut(s)	34
BisI	GCNGC	2 cut(s)	6, 270
BlsI	GCNGC	2 cut(s)	7, 271
Bme1390I	CCNGG	2 cut(s)	616, 651
Bme18I	GGWCC	1 cut(s)	155
BmgBI	CACGTC	1 cut(s)	52
BmgT120I	GGNCC	2 cut(s)	155, 444
BmrFI	CCNGG	2 cut(s)	616, 651
BmsI	GCATC	4 cut(s)	17, 652, 880, 1043
BpiI	GAAGAC	1 cut(s)	939
BplI	GAGNNNNNCTC	4 cut(s)	365, 397, 515, 547
BpmI	CTGGAG	1 cut(s)	409
Bpu10I	CCTNAGC	1 cut(s)	541
BpuEI	CTTGAG	1 cut(s)	542
BpuMI	CCSGG	2 cut(s)	616, 651
Bsa29I	ATCGAT	2 cut(s)	135, 860
BsaJI	CCNNGG	7 cut(s)	99, 151, 229, 504, 614, 650, 772
Bsc4I	CCNNNNNNNGG	1 cut(s)	787
Bse1I	ACTGG	2 cut(s)	74, 392
Bse3DI	GCAATG	2 cut(s)	409, 805
BseCI	ATCGAT	2 cut(s)	135, 860
BseDI	CCNNGG	7 cut(s)	99, 151, 229, 504, 614, 650, 772
BseGI	GGATG	1 cut(s)	1034
BseLI	CCNNNNNNNGG	1 cut(s)	787
BseMI	GCAATG	2 cut(s)	409, 805
BseMII	CTCAG	3 cut(s)	333, 546, 999
BseNI	ACTGG	2 cut(s)	74, 392
BseRI	GAGGAG	1 cut(s)	8
BseXI	GCAGC	1 cut(s)	17
BshFI	GGCC	1 cut(s)	445
BshVI	ATCGAT	2 cut(s)	135, 860
BsiSI	CCGG	4 cut(s)	114, 286, 616, 650
BslFI	GGGAC	2 cut(s)	38, 1004
BslI	CCNNNNNNNGG	1 cut(s)	787
BsmAI	GTCTC	5 cut(s)	82, 337, 385, 387, 703
BsmFI	GGGAC	2 cut(s)	38, 1004
BsmI	GAATGC	1 cut(s)	271
BsnI	GGCC	1 cut(s)	445
Bsp143I	GATC	8 cut(s)	46, 136, 219, 249, 456, 672, 732, 918
Bsp19I	CCATGG	2 cut(s)	151, 229
BspACI	CCGC	4 cut(s)	269, 830, 853, 1041
BspANI	GGCC	1 cut(s)	445
BspCNI	CTCAG	3 cut(s)	332, 545, 1000
BspDI	ATCGAT	2 cut(s)	135, 860
BspMI	ACCTGC	1 cut(s)	778
BspPI	GGATC	1 cut(s)	740
BspQI	GCTCTTC	1 cut(s)	205
BsrBI	CCGCTC	2 cut(s)	830, 853
BsrDI	GCAATG	2 cut(s)	409, 805
BsrI	ACTGG	2 cut(s)	74, 392
BssECI	CCNNGG	7 cut(s)	99, 151, 229, 504, 614, 650, 772
BssMI	GATC	8 cut(s)	46, 136, 219, 249, 456, 672, 732, 918
BssT1I	CCWWGG	4 cut(s)	151, 229, 504, 772
Bst4CI	ACNGT	4 cut(s)	86, 560, 679, 878
Bst6I	CTCTTC	1 cut(s)	205
BstC8I	GCNNGC	1 cut(s)	196
BstDEI	CTNAG	4 cut(s)	319, 532, 541, 1008
BstDSI	CCRYGG	2 cut(s)	151, 229
BstEII	GGTNACC	1 cut(s)	776
BstF5I	GGATG	1 cut(s)	1034
BstKTI	GATC	8 cut(s)	49, 139, 222, 252, 459, 675, 735, 921
BstMAI	GTCTC	5 cut(s)	82, 337, 385, 387, 703
BstMBI	GATC	8 cut(s)	46, 136, 219, 249, 456, 672, 732, 918
BstMWI	GCNNNNNNNGC	2 cut(s)	485, 1040
BstNSI	RCATGY	1 cut(s)	198
BstPI	GGTNACC	1 cut(s)	776
BstSCI	CCNGG	2 cut(s)	614, 649
BstV1I	GCAGC	1 cut(s)	17
BstV2I	GAAGAC	1 cut(s)	939
Bsu15I	ATCGAT	2 cut(s)	135, 860
BsuI	GTATCC	1 cut(s)	34
BsuRI	GGCC	1 cut(s)	445
BsuTUI	ATCGAT	2 cut(s)	135, 860
BtgI	CCRYGG	2 cut(s)	151, 229
BtgZI	GCGATG	1 cut(s)	16
BtrI	CACGTC	1 cut(s)	52
BtsCI	GGATG	1 cut(s)	1034
BtsIMutI	CAGTG	1 cut(s)	675
BveI	ACCTGC	1 cut(s)	778
Cac8I	GCNNGC	1 cut(s)	196
CaiI	CAGNNNCTG	1 cut(s)	80
Cfr13I	GGNCC	2 cut(s)	155, 444
ClaI	ATCGAT	2 cut(s)	135, 860
Csp6I	GTAC	1 cut(s)	236
CviAII	CATG	7 cut(s)	152, 191, 195, 230, 584, 595, 847
CviQI	GTAC	1 cut(s)	236
DdeI	CTNAG	4 cut(s)	319, 532, 541, 1008
DpnI	GATC	8 cut(s)	48, 138, 221, 251, 458, 674, 734, 920
DpnII	GATC	8 cut(s)	46, 136, 219, 249, 456, 672, 732, 918
DraI	TTTAAA	1 cut(s)	718
Eam1104I	CTCTTC	1 cut(s)	205
EarI	CTCTTC	1 cut(s)	205
Eco130I	CCWWGG	4 cut(s)	151, 229, 504, 772
Eco32I	GATATC	1 cut(s)	858
Eco47I	GGWCC	1 cut(s)	155
Eco57I	CTGAAG	1 cut(s)	906
Eco91I	GGTNACC	1 cut(s)	776
EcoO65I	GGTNACC	1 cut(s)	776
EcoRV	GATATC	1 cut(s)	858
EcoT14I	CCWWGG	4 cut(s)	151, 229, 504, 772
EcoT22I	ATGCAT	1 cut(s)	196
ErhI	CCWWGG	4 cut(s)	151, 229, 504, 772
FaeI	CATG	7 cut(s)	155, 194, 198, 233, 587, 598, 850
FaqI	GGGAC	2 cut(s)	38, 1004
FatI	CATG	7 cut(s)	151, 190, 194, 229, 583, 594, 846
FauNDI	CATATG	1 cut(s)	964
FbaI	TGATCA	3 cut(s)	46, 672, 918
Fnu4HI	GCNGC	2 cut(s)	6, 270
FokI	GGATG	1 cut(s)	1021
Fsp4HI	GCNGC	2 cut(s)	6, 270
GluI	GCNGC	2 cut(s)	6, 270
GsuI	CTGGAG	1 cut(s)	409
HaeIII	GGCC	1 cut(s)	445
HapII	CCGG	4 cut(s)	114, 286, 616, 650
Hin1II	CATG	7 cut(s)	155, 194, 198, 233, 587, 598, 850
HincII	GTYRAC	2 cut(s)	590, 769
HindII	GTYRAC	2 cut(s)	590, 769
HinfI	GANTC	5 cut(s)	119, 345, 405, 935, 1022
HpaII	CCGG	4 cut(s)	114, 286, 616, 650
HphI	GGTGA	1 cut(s)	788
Hpy166II	GTNNAC	4 cut(s)	590, 707, 769, 838
Hpy188I	TCNGA	9 cut(s)	28, 71, 82, 100, 295, 467, 513, 535, 886
Hpy188III	TCNNGA	4 cut(s)	217, 223, 521, 689
Hpy8I	GTNNAC	4 cut(s)	590, 707, 769, 838
HpyAV	CCTTC	3 cut(s)	66, 410, 891
HpyCH4III	ACNGT	4 cut(s)	86, 560, 679, 878
HpyCH4IV	ACGT	3 cut(s)	51, 66, 363
HpyCH4V	TGCA	3 cut(s)	194, 665, 787
HpyF10VI	GCNNNNNNNGC	2 cut(s)	485, 1040
HpyF3I	CTNAG	4 cut(s)	319, 532, 541, 1008
HpySE526I	ACGT	3 cut(s)	51, 66, 363
Hsp92II	CATG	7 cut(s)	155, 194, 198, 233, 587, 598, 850
Ksp22I	TGATCA	3 cut(s)	46, 672, 918
Kzo9I	GATC	8 cut(s)	46, 136, 219, 249, 456, 672, 732, 918
LguI	GCTCTTC	1 cut(s)	205
LmnI	GCTCC	1 cut(s)	850
Lsp1109I	GCAGC	1 cut(s)	17
LweI	GCATC	4 cut(s)	17, 652, 880, 1043
MaeII	ACGT	3 cut(s)	51, 66, 363
MaeIII	GTNAC	2 cut(s)	472, 776
MalI	GATC	8 cut(s)	48, 138, 221, 251, 458, 674, 734, 920
MbiI	CCGCTC	2 cut(s)	830, 853
MboI	GATC	8 cut(s)	46, 136, 219, 249, 456, 672, 732, 918
MlyI	GAGTC	5 cut(s)	113, 339, 399, 929, 1016
MmeI	TCCRAC	1 cut(s)	51
MnlI	CCTC	9 cut(s)	29, 46, 94, 138, 158, 457, 517, 633, 919
Mph1103I	ATGCAT	1 cut(s)	196
MseI	TTAA	3 cut(s)	603, 717, 741
MslI	CAYNNNNRTG	1 cut(s)	660
MspI	CCGG	4 cut(s)	114, 286, 616, 650
MspR9I	CCNGG	2 cut(s)	616, 651
Mva1269I	GAATGC	1 cut(s)	271
MwoI	GCNNNNNNNGC	2 cut(s)	485, 1040
NciI	CCSGG	2 cut(s)	616, 651
NcoI	CCATGG	2 cut(s)	151, 229
NdeI	CATATG	1 cut(s)	964
NdeII	GATC	8 cut(s)	46, 136, 219, 249, 456, 672, 732, 918
NlaIII	CATG	7 cut(s)	155, 194, 198, 233, 587, 598, 850
NmuCI	GTSAC	2 cut(s)	472, 776
NsiI	ATGCAT	1 cut(s)	196
NspI	RCATGY	1 cut(s)	198
PaeI	GCATGC	1 cut(s)	198
PciSI	GCTCTTC	1 cut(s)	205
PcsI	WCGNNNNNNNCGW	4 cut(s)	39, 48, 141, 492
PctI	GAATGC	1 cut(s)	271
PkrI	GCNGC	2 cut(s)	7, 271
PleI	GAGTC	5 cut(s)	113, 339, 399, 929, 1016
PpsI	GAGTC	5 cut(s)	113, 339, 399, 929, 1016
PsiI	TTATAA	1 cut(s)	794
Psp1406I	AACGTT	1 cut(s)	363
PspEI	GGTNACC	1 cut(s)	776
PspPI	GGNCC	2 cut(s)	155, 444
PstNI	CAGNNNCTG	1 cut(s)	80
RsaI	GTAC	1 cut(s)	237
RsaNI	GTAC	1 cut(s)	236
RseI	CAYNNNNRTG	1 cut(s)	660
SapI	GCTCTTC	1 cut(s)	205
SaqAI	TTAA	3 cut(s)	603, 717, 741
SatI	GCNGC	2 cut(s)	6, 270
Sau3AI	GATC	8 cut(s)	46, 136, 219, 249, 456, 672, 732, 918
Sau96I	GGNCC	2 cut(s)	155, 444
SchI	GAGTC	5 cut(s)	113, 339, 399, 929, 1016
ScrFI	CCNGG	2 cut(s)	616, 651
SfaNI	GCATC	4 cut(s)	17, 652, 880, 1043
SinI	GGWCC	1 cut(s)	155
SmiMI	CAYNNNNRTG	1 cut(s)	660
SmlI	CTYRAG	1 cut(s)	521
SmoI	CTYRAG	1 cut(s)	521
SphI	GCATGC	1 cut(s)	198
SsiI	CCGC	4 cut(s)	269, 830, 853, 1041
SspI	AATATT	1 cut(s)	974
StyD4I	CCNGG	2 cut(s)	614, 649
StyI	CCWWGG	4 cut(s)	151, 229, 504, 772
TaaI	ACNGT	4 cut(s)	86, 560, 679, 878
TaiI	ACGT	3 cut(s)	54, 69, 366
TaqI	TCGA	5 cut(s)	135, 163, 403, 423, 860
TauI	GCSGC	1 cut(s)	272
Tru1I	TTAA	3 cut(s)	603, 717, 741
Tru9I	TTAA	3 cut(s)	603, 717, 741
TscAI	CASTG	1 cut(s)	682
TseFI	GTSAC	2 cut(s)	472, 776
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	2 cut(s)	472, 776
TspDTI	ATGAA	6 cut(s)	278, 421, 453, 708, 751, 816
TspGWI	ACGGA	1 cut(s)	657
TspRI	CASTG	1 cut(s)	682
VpaK11BI	GGWCC	1 cut(s)	155
XceI	RCATGY	1 cut(s)	198
XcmI	CCANNNNNNNNNTGG	1 cut(s)	149
Zsp2I	ATGCAT	1 cut(s)	196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.