Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0002796

Physical Location & Seq

Genomic Coordinates Reverse (-)

12813092 .. 12814875

Gene Structure 1784 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G134500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGGCCACAGCAACAAAGCTACTGCTAACAGACCTCATGTCTGGTGTGAACCATGTCCCCTCAAACTACGTTAGGCCCATCTCTGACCGTCCAAATCTCTCTGATGTTCAGATATCAGATGCCTCCATTCCTCTCATTGATCTCAAGGACCTCCATGGCCACAACCACTCTAATATTATCAAACAGATTGGCCTAGCTTGCCAAACTGATGGTTTCTTTCAGGTGAAAAATCATGGGGTGCCAGAGGAAATGATCAAAGACATGTTAAGTATAGCAAGAGAGTTTTTCAAGTTGCCAGAGAGTGAGAGGTTGAAGATGTACTCAGATGACCCTTCAAAGACCACAAGGCTTTCCACTAGTTTCAATGTCAGGACTGAAAAACTTTCCAACTGGAGGGACTTTCTGAGACTCCATTGCTACCCTCTTGAAGACTATGTCCAAGAATGGCCTAACAATCCCCCATCATTCAGGGAGCAAGTGGGTGAGTATTGCACAACTGTGAGAGGGCTGGTGCTGAGATTGCTTGGGGCCATATCAGAAAGCTTGGGCTTAGAAAAGAACTATATTGTTGAGGCATTAGGCAAGCAAGGCCAGCATATGGCTTTGAATTACTATCCACCCTGTCCAGAACCAGAGCTTACATATGGATTGCCTGGACATACAGATTGTAACCTAATCACCATCCTTCTCCAAGATGATGTGGCTGGATTGCAGGTCCTTAGAAATGGCAAGTGGGTTGCTGTCAACCCCATTCCCAACACTTTTATTGTCAATATTGGTGATATGATGCAGGTAATTAGCAATGATAAGTACAAAAGTGTGCTGCACAGAGCTGTGGTTAACTGCAACTCTGAGAGAATATCAATTCCAACCTTCTACTGTCCATCACCTGATGCAGTGATTGGGCCAGCCAAGGACCTGATCAGCCATGATCAACCAGCCATGTACAGGAACTTCACATATGCTGAATACTTTGAGAAATTCTGGAACAGAGGACTTGCAACTGAGTGCTGCTTAGACTTGTTCAAACCCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002229 GO:0002239 GO:0006082 GO:0006725 GO:0006950 GO:0006952 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009056 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009696 GO:0009719 GO:0009725 GO:0009751 GO:0009987 GO:0010033 GO:0010150 GO:0010817 GO:0014070 GO:0016054 GO:0016999 GO:0017001 GO:0017144 GO:0018958 GO:0019336 GO:0019439 GO:0019752 GO:0032501 GO:0032502 GO:0032787 GO:0042221 GO:0042445 GO:0042447 GO:0042493 GO:0042537 GO:0042737 GO:0043207 GO:0043436 GO:0044237 GO:0044248 GO:0044281 GO:0044282 GO:0046244 GO:0046395 GO:0046677 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0065008 GO:0071704 GO:0072329 GO:0090693 GO:0098542 GO:0099402 GO:1901360 GO:1901361 GO:1901575 GO:1901615 GO:1901616 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

346

Amino Acids

39.11

Weight (kDa)

5.82

Isoelectric Point (pI)

40.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10490 AT4G10500
fragaria_vesca	FvH4_5g10430 FvH4_7g17840
malus_domestica	MD01G1090000.v1.1 MD06G1124100.v1.1 MD14G1140400.v1.1 MD14G1140700.v1.1 MD14G1141000.v1.1 MD14G1141200.v1.1
prunus_persica	Prupe.2G199700_v2.0.a1 Prupe.2G200200_v2.0.a1 Prupe.2G200200_v2.0.a1 Prupe.2G200200_v2.0.a1 Prupe.5G134500_v2.0.a1 Prupe.5G134700_v2.0.a1
pyrus_communis	pycom01g11450 pycom06g11450 pycom14g11590
rosa_chinensis	RchiOBHm_Chr1g0361261 RchiOBHm_Chr7g0187801
rosa_laevigata	RLG00000004755 RLG00000027730
rosa_multiflora	Rmu_sc0002119.1_g000038 Rmu_sc0004483.1_g000038
rosa_roxburghii	Rroxscaffold_3G00267060 Rroxscaffold_4G00295120
rosa_rugosa	Rorug01G0287700 Rorug01G0287700 Rorug02G0186700 Rorug06G0484300
rosa_samantha	Rh1AG299000 Rh1BG262900 Rh1CG280300 Rh1DG292900 Rh7CG090300 Rh7DG091900
rosa_wichuraiana	Rw1G026450 Rw7G007720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	703, 781
AccB1I	GGYRCC	1 cut(s)	238
AccB7I	CCANNNNNTGG	1 cut(s)	598
AcoI	YGGCCR	2 cut(s)	3, 157
AcsI	RAATTY	1 cut(s)	980
AfaI	GTAC	3 cut(s)	320, 812, 947
AfiI	CCNNNNNNNGG	3 cut(s)	393, 598, 948
AflIII	ACRYGT	1 cut(s)	261
AgsI	TTSAA	7 cut(s)	289, 313, 336, 364, 428, 607, 1027
AhdI	GACNNNNNGTC	1 cut(s)	37
AhlI	ACTAGT	1 cut(s)	356
AjnI	CCWGG	1 cut(s)	652
AleI	CACNNNNGTG	1 cut(s)	497
AluBI	AGCT	5 cut(s)	19, 197, 543, 637, 833
AluI	AGCT	5 cut(s)	19, 197, 543, 637, 833
Alw26I	GTCTC	1 cut(s)	400
AoxI	GGCC	8 cut(s)	3, 74, 157, 190, 446, 528, 589, 905
ApeKI	GCWGC	2 cut(s)	823, 1011
ApoI	RAATTY	1 cut(s)	980
AspS9I	GGNCC	6 cut(s)	75, 148, 528, 715, 905, 916
AsuHPI	GGTGA	5 cut(s)	235, 494, 670, 791, 879
AvaII	GGWCC	3 cut(s)	148, 715, 916
BalI	TGGCCA	2 cut(s)	5, 159
BanI	GGYRCC	1 cut(s)	238
BarI	GAAGNNNNNNTAC	2 cut(s)	938, 970
BbsI	GAAGAC	1 cut(s)	435
BbvI	GCAGC	2 cut(s)	810, 998
BccI	CCATC	5 cut(s)	86, 203, 469, 689, 892
BciT130I	CCWGG	1 cut(s)	654
BclI	TGATCA	3 cut(s)	252, 921, 931
BcoDI	GTCTC	1 cut(s)	400
BcuI	ACTAGT	1 cut(s)	356
BfaI	CTAG	2 cut(s)	194, 357
BfuAI	ACCTGC	2 cut(s)	703, 781
BisI	GCNGC	2 cut(s)	824, 1012
BlsI	GCNGC	2 cut(s)	825, 1013
Bme1390I	CCNGG	1 cut(s)	654
Bme18I	GGWCC	3 cut(s)	148, 715, 916
BmeRI	GACNNNNNGTC	1 cut(s)	37
BmgT120I	GGNCC	6 cut(s)	75, 148, 528, 715, 905, 916
BmiI	GGNNCC	2 cut(s)	240, 529
BmrFI	CCNGG	1 cut(s)	654
BmsI	GCATC	3 cut(s)	109, 777, 883
BpiI	GAAGAC	1 cut(s)	435
BpmI	CTGGAG	1 cut(s)	412
BpuEI	CTTGAG	1 cut(s)	128
BsaJI	CCNNGG	2 cut(s)	154, 912
Bsc4I	CCNNNNNNNGG	3 cut(s)	393, 598, 948
Bse1I	ACTGG	1 cut(s)	395
Bse3DI	GCAATG	2 cut(s)	412, 808
BseBI	CCWGG	1 cut(s)	654
BseDI	CCNNGG	2 cut(s)	154, 912
BseGI	GGATG	1 cut(s)	681
BseLI	CCNNNNNNNGG	3 cut(s)	393, 598, 948
BseMI	GCAATG	2 cut(s)	412, 808
BseMII	CTCAG	5 cut(s)	336, 395, 506, 843, 996
BseNI	ACTGG	1 cut(s)	395
BseXI	GCAGC	2 cut(s)	810, 998
BsgI	GTGCAG	1 cut(s)	809
BshFI	GGCC	8 cut(s)	5, 76, 159, 192, 448, 530, 591, 907
BshNI	GGYRCC	1 cut(s)	238
BslFI	GGGAC	2 cut(s)	41, 410
BslI	CCNNNNNNNGG	3 cut(s)	393, 598, 948
BsmAI	GTCTC	1 cut(s)	400
BsmFI	GGGAC	2 cut(s)	41, 410
BsnI	GGCC	8 cut(s)	5, 76, 159, 192, 448, 530, 591, 907
Bsp1407I	TGTACA	1 cut(s)	945
Bsp143I	GATC	4 cut(s)	139, 252, 921, 931
Bsp19I	CCATGG	1 cut(s)	154
BspANI	GGCC	8 cut(s)	5, 76, 159, 192, 448, 530, 591, 907
BspCNI	CTCAG	5 cut(s)	335, 396, 507, 844, 997
BspLI	GGNNCC	2 cut(s)	240, 529
BspMI	ACCTGC	2 cut(s)	703, 781
BspT107I	GGYRCC	1 cut(s)	238
BsrDI	GCAATG	2 cut(s)	412, 808
BsrGI	TGTACA	1 cut(s)	945
BsrI	ACTGG	1 cut(s)	395
BssECI	CCNNGG	2 cut(s)	154, 912
BssMI	GATC	4 cut(s)	139, 252, 921, 931
BssT1I	CCWWGG	2 cut(s)	154, 912
Bst2UI	CCWGG	1 cut(s)	654
Bst4CI	ACNGT	3 cut(s)	89, 499, 881
BstAUI	TGTACA	1 cut(s)	945
BstC8I	GCNNGC	4 cut(s)	199, 584, 593, 909
BstDEI	CTNAG	8 cut(s)	322, 404, 515, 550, 719, 852, 1005, 1015
BstDSI	CCRYGG	1 cut(s)	154
BstF5I	GGATG	1 cut(s)	681
BstKTI	GATC	4 cut(s)	142, 255, 924, 934
BstMAI	GTCTC	1 cut(s)	400
BstMBI	GATC	4 cut(s)	139, 252, 921, 931
BstMWI	GCNNNNNNNGC	4 cut(s)	198, 520, 588, 592
BstNI	CCWGG	1 cut(s)	654
BstNSI	RCATGY	1 cut(s)	265
BstSCI	CCNGG	1 cut(s)	652
BstV1I	GCAGC	2 cut(s)	810, 998
BstV2I	GAAGAC	1 cut(s)	435
BstXI	CCANNNNNNTGG	1 cut(s)	209
BsuRI	GGCC	8 cut(s)	5, 76, 159, 192, 448, 530, 591, 907
BtgI	CCRYGG	1 cut(s)	154
BtsCI	GGATG	1 cut(s)	681
BtsI	GCAGTG	1 cut(s)	903
BtsIMutI	CAGTG	1 cut(s)	903
BveI	ACCTGC	2 cut(s)	703, 781
Cac8I	GCNNGC	4 cut(s)	199, 584, 593, 909
Cfr13I	GGNCC	6 cut(s)	75, 148, 528, 715, 905, 916
Csp6I	GTAC	3 cut(s)	319, 811, 946
CviAII	CATG	7 cut(s)	37, 53, 155, 233, 262, 929, 943
CviQI	GTAC	3 cut(s)	319, 811, 946
DdeI	CTNAG	8 cut(s)	322, 404, 515, 550, 719, 852, 1005, 1015
DpnI	GATC	4 cut(s)	141, 254, 923, 933
DpnII	GATC	4 cut(s)	139, 252, 921, 931
DriI	GACNNNNNGTC	1 cut(s)	37
EaeI	YGGCCR	2 cut(s)	3, 157
Eam1105I	GACNNNNNGTC	1 cut(s)	37
Eco130I	CCWWGG	2 cut(s)	154, 912
Eco32I	GATATC	1 cut(s)	114
Eco47I	GGWCC	3 cut(s)	148, 715, 916
EcoO109I	RGGNCCY	3 cut(s)	148, 715, 916
EcoRII	CCWGG	1 cut(s)	652
EcoRV	GATATC	1 cut(s)	114
EcoT14I	CCWWGG	2 cut(s)	154, 912
ErhI	CCWWGG	2 cut(s)	154, 912
FaeI	CATG	7 cut(s)	40, 56, 158, 236, 265, 932, 946
FaqI	GGGAC	2 cut(s)	41, 410
FatI	CATG	7 cut(s)	36, 52, 154, 232, 261, 928, 942
FauNDI	CATATG	3 cut(s)	597, 643, 961
FbaI	TGATCA	3 cut(s)	252, 921, 931
Fnu4HI	GCNGC	2 cut(s)	824, 1012
FokI	GGATG	1 cut(s)	668
Fsp4HI	GCNGC	2 cut(s)	824, 1012
FspBI	CTAG	2 cut(s)	194, 357
GluI	GCNGC	2 cut(s)	824, 1012
GsuI	CTGGAG	1 cut(s)	412
HaeIII	GGCC	8 cut(s)	5, 76, 159, 192, 448, 530, 591, 907
Hin1II	CATG	7 cut(s)	40, 56, 158, 236, 265, 932, 946
HincII	GTYRAC	2 cut(s)	745, 841
HindII	GTYRAC	2 cut(s)	745, 841
HindIII	AAGCTT	1 cut(s)	541
HinfI	GANTC	1 cut(s)	408
HpaI	GTTAAC	1 cut(s)	841
HphI	GGTGA	5 cut(s)	235, 494, 670, 791, 879
Hpy166II	GTNNAC	3 cut(s)	49, 745, 841
Hpy188I	TCNGA	8 cut(s)	85, 103, 111, 118, 325, 405, 538, 853
Hpy188III	TCNNGA	4 cut(s)	370, 425, 626, 985
Hpy8I	GTNNAC	3 cut(s)	49, 745, 841
HpyAV	CCTTC	3 cut(s)	342, 695, 883
HpyCH4III	ACNGT	3 cut(s)	89, 499, 881
HpyCH4IV	ACGT	1 cut(s)	69
HpyCH4V	TGCA	7 cut(s)	492, 712, 790, 826, 846, 896, 1001
HpyF10VI	GCNNNNNNNGC	4 cut(s)	198, 520, 588, 592
HpyF3I	CTNAG	8 cut(s)	322, 404, 515, 550, 719, 852, 1005, 1015
HpySE526I	ACGT	1 cut(s)	69
Hsp92II	CATG	7 cut(s)	40, 56, 158, 236, 265, 932, 946
Ksp22I	TGATCA	3 cut(s)	252, 921, 931
KspAI	GTTAAC	1 cut(s)	841
Kzo9I	GATC	4 cut(s)	139, 252, 921, 931
LmnI	GCTCC	1 cut(s)	472
Lsp1109I	GCAGC	2 cut(s)	810, 998
LweI	GCATC	3 cut(s)	109, 777, 883
MaeI	CTAG	2 cut(s)	194, 357
MaeII	ACGT	1 cut(s)	69
MaeIII	GTNAC	1 cut(s)	668
MalI	GATC	4 cut(s)	141, 254, 923, 933
MboI	GATC	4 cut(s)	139, 252, 921, 931
MboII	GAAGA	2 cut(s)	325, 440
MfeI	CAATTG	1 cut(s)	1033
MlsI	TGGCCA	2 cut(s)	5, 159
MluCI	AATT	5 cut(s)	607, 795, 864, 980, 1033
MluNI	TGGCCA	2 cut(s)	5, 159
MlyI	GAGTC	1 cut(s)	402
MmeI	TCCRAC	2 cut(s)	411, 893
Mox20I	TGGCCA	2 cut(s)	5, 159
MscI	TGGCCA	2 cut(s)	5, 159
MseI	TTAA	2 cut(s)	266, 840
MslI	CAYNNNNRTG	1 cut(s)	497
Msp20I	TGGCCA	2 cut(s)	5, 159
MspR9I	CCNGG	1 cut(s)	654
MunI	CAATTG	1 cut(s)	1033
MvaI	CCWGG	1 cut(s)	654
MwoI	GCNNNNNNNGC	4 cut(s)	198, 520, 588, 592
NcoI	CCATGG	1 cut(s)	154
NdeI	CATATG	3 cut(s)	597, 643, 961
NdeII	GATC	4 cut(s)	139, 252, 921, 931
NlaIII	CATG	7 cut(s)	40, 56, 158, 236, 265, 932, 946
NlaIV	GGNNCC	2 cut(s)	240, 529
NspI	RCATGY	1 cut(s)	265
OliI	CACNNNNGTG	1 cut(s)	497
PciI	ACATGT	1 cut(s)	261
PflFI	GACNNNGTC	1 cut(s)	434
PflMI	CCANNNNNTGG	1 cut(s)	598
PkrI	GCNGC	2 cut(s)	825, 1013
PleI	GAGTC	1 cut(s)	402
PpsI	GAGTC	1 cut(s)	402
PpuMI	RGGWCCY	3 cut(s)	148, 715, 916
PscI	ACATGT	1 cut(s)	261
Psp5II	RGGWCCY	3 cut(s)	148, 715, 916
Psp6I	CCWGG	1 cut(s)	652
PspGI	CCWGG	1 cut(s)	652
PspN4I	GGNNCC	2 cut(s)	240, 529
PspPI	GGNCC	6 cut(s)	75, 148, 528, 715, 905, 916
PspPPI	RGGWCCY	3 cut(s)	148, 715, 916
PsyI	GACNNNGTC	1 cut(s)	434
RsaI	GTAC	3 cut(s)	320, 812, 947
RsaNI	GTAC	3 cut(s)	319, 811, 946
RseI	CAYNNNNRTG	1 cut(s)	497
SaqAI	TTAA	2 cut(s)	266, 840
SatI	GCNGC	2 cut(s)	824, 1012
Sau3AI	GATC	4 cut(s)	139, 252, 921, 931
Sau96I	GGNCC	6 cut(s)	75, 148, 528, 715, 905, 916
SchI	GAGTC	1 cut(s)	402
ScrFI	CCNGG	1 cut(s)	654
SfaNI	GCATC	3 cut(s)	109, 777, 883
SinI	GGWCC	3 cut(s)	148, 715, 916
SmiMI	CAYNNNNRTG	1 cut(s)	497
SmlI	CTYRAG	1 cut(s)	143
SmoI	CTYRAG	1 cut(s)	143
SpeI	ACTAGT	1 cut(s)	356
Sse9I	AATT	5 cut(s)	607, 795, 864, 980, 1033
SspI	AATATT	2 cut(s)	175, 775
SspMI	CTAG	2 cut(s)	194, 357
StyD4I	CCNGG	1 cut(s)	652
StyI	CCWWGG	2 cut(s)	154, 912
TaaI	ACNGT	3 cut(s)	89, 499, 881
TaiI	ACGT	1 cut(s)	72
TasI	AATT	5 cut(s)	607, 795, 864, 980, 1033
TatI	WGTACW	3 cut(s)	318, 810, 945
Tru1I	TTAA	2 cut(s)	266, 840
Tru9I	TTAA	2 cut(s)	266, 840
TscAI	CASTG	1 cut(s)	903
TseI	GCWGC	2 cut(s)	823, 1011
TspRI	CASTG	1 cut(s)	903
Tth111I	GACNNNGTC	1 cut(s)	434
Van91I	CCANNNNNTGG	1 cut(s)	598
VpaK11BI	GGWCC	3 cut(s)	148, 715, 916
XapI	RAATTY	1 cut(s)	980
XceI	RCATGY	1 cut(s)	265
XspI	CTAG	2 cut(s)	194, 357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.