Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0002796

Physical Location & Seq

Genomic Coordinates Reverse (-)

16744860 .. 16746944

Gene Structure 2085 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g11450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGCTTCCACAACAAAGCTACTGCTCACAGACCTCATGTCTGGTGTGAACCATGTCCCTTCAAACTACATCAGACCCTTCTCCGACCGTCCAAATCTTACTGATGTTCAGACATCAGATGCCTCCTCCATTCCTCTCATTGATCTCAAGGACCTCCATGGCCCCAAGCACTCTGATATTATCAAACAAATTGGTCTAGCATGCCAAACTGATGGTTTCTTCCTGGTGAAAAATCATGGAGTTCCAGAGACAATGATCAAAAACATGTTGAGTATAGCAAGAGAGTTTTTCAAATTACCAGAACGTGAGAGGTTGAAGATGTACTCAGATGACCCTTCTAAGACCACCAGGCTCTCCACCAGTTTCAATGTCAGGACTGAAAAATTGTCCAACTGGAGGGACTTCCTTAGACTGCATTGCTTCCCACTTCAAGACTATGTCCAAGAATGGCCTAACAATCCCCCGTTGTTCAGGGAGCAAGTGGGTGAGTACTGCACAAGTGTGAGAGGATTAGTGCTGAGATTGCTTGAGGGCATATCAGAGAGCTTGGGCTTGGAAAAGAACTATATTGTTAAGGCATTGGGAAAGCAAGGACAACATATGGCTTTGAATTACTATCCACCATGTCCACAGCCAGAGCTGACTTATGGATTGCCTGGACATACGGACGCTAACCTAATTACCATCCTTCTCCAAGATGAGGTGCCTGGGTTGCAGGTCCTTAGAAATGGCAAGTGGGTTGCTGTCAACCCCATTCCCAACACCTTCATTGTCAATATTGGTGATATGATGCAGGTAATTAGCAACGGTAAGTACAAGAGTGTGCTGCATAGGACCGTGGTAAATTGTAATTCGGAAAGGATATCGATCCCAACTTTCTACTGTCCAGCACCAGATGCGATGATTGGGCCTGCCAAGGAGCTCATCAACCATGACCATCAAGCCATGTTCAGGAACTTCACTTATGCTGAATACTTTAAAAAATTCTGGAATAGAGGACTTGAAAGTGAATGTTGCTTAGACTTGTTCAAACCCACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002229 GO:0002239 GO:0006082 GO:0006725 GO:0006950 GO:0006952 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009056 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009696 GO:0009719 GO:0009725 GO:0009751 GO:0009987 GO:0010033 GO:0010150 GO:0010817 GO:0014070 GO:0016054 GO:0016999 GO:0017001 GO:0017144 GO:0018958 GO:0019336 GO:0019439 GO:0019752 GO:0032501 GO:0032502 GO:0032787 GO:0042221 GO:0042445 GO:0042447 GO:0042493 GO:0042537 GO:0042737 GO:0043207 GO:0043436 GO:0044237 GO:0044248 GO:0044281 GO:0044282 GO:0046244 GO:0046395 GO:0046677 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0065008 GO:0071704 GO:0072329 GO:0090693 GO:0098542 GO:0099402 GO:1901360 GO:1901361 GO:1901575 GO:1901615 GO:1901616 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

347

Amino Acids

39.41

Weight (kDa)

7.61

Isoelectric Point (pI)

36.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	44 - 152	2.1e-26	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	199 - 296	7e-39	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10490 AT4G10500
fragaria_vesca	FvH4_5g10430 FvH4_7g17840
malus_domestica	MD01G1090000.v1.1 MD06G1124100.v1.1 MD14G1140400.v1.1 MD14G1140700.v1.1 MD14G1141000.v1.1 MD14G1141200.v1.1
prunus_persica	Prupe.2G199700_v2.0.a1 Prupe.2G200200_v2.0.a1 Prupe.2G200200_v2.0.a1 Prupe.2G200200_v2.0.a1 Prupe.5G134500_v2.0.a1 Prupe.5G134700_v2.0.a1
pyrus_communis	pycom01g11450 pycom06g11450 pycom14g11590
rosa_chinensis	RchiOBHm_Chr1g0361261 RchiOBHm_Chr7g0187801
rosa_laevigata	RLG00000004755 RLG00000027730
rosa_multiflora	Rmu_sc0002119.1_g000038 Rmu_sc0004483.1_g000038
rosa_roxburghii	Rroxscaffold_3G00267060 Rroxscaffold_4G00295120
rosa_rugosa	Rorug01G0287700 Rorug01G0287700 Rorug02G0186700 Rorug06G0484300
rosa_samantha	Rh1AG299000 Rh1BG262900 Rh1CG280300 Rh1DG292900 Rh7CG090300 Rh7DG091900
rosa_wichuraiana	Rw1G026450 Rw7G007720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	706, 784
AccB1I	GGYRCC	1 cut(s)	703
AclWI	GGATC	1 cut(s)	862
AcsI	RAATTY	1 cut(s)	983
AfaI	GTAC	3 cut(s)	323, 491, 815
AfiI	CCNNNNNNNGG	3 cut(s)	396, 700, 951
AflIII	ACRYGT	1 cut(s)	264
AgsI	TTSAA	8 cut(s)	63, 292, 316, 367, 431, 610, 1004, 1030
AhdI	GACNNNNNGTC	1 cut(s)	37
AjnI	CCWGG	4 cut(s)	222, 347, 655, 706
AleI	CACNNNNGTG	1 cut(s)	500
AluBI	AGCT	4 cut(s)	19, 546, 640, 922
AluI	AGCT	4 cut(s)	19, 546, 640, 922
Alw21I	GWGCWC	1 cut(s)	924
Alw26I	GTCTC	1 cut(s)	242
AlwI	GGATC	1 cut(s)	862
AoxI	GGCC	3 cut(s)	160, 449, 908
ApeKI	GCWGC	1 cut(s)	826
ApoI	RAATTY	1 cut(s)	983
AspS9I	GGNCC	5 cut(s)	151, 161, 718, 834, 908
AsuHPI	GGTGA	3 cut(s)	238, 497, 794
AvaII	GGWCC	3 cut(s)	151, 718, 834
BanI	GGYRCC	1 cut(s)	703
BanII	GRGCYC	1 cut(s)	924
Bbv12I	GWGCWC	1 cut(s)	924
BbvI	GCAGC	1 cut(s)	813
BccI	CCATC	3 cut(s)	206, 692, 945
BciT130I	CCWGG	4 cut(s)	224, 349, 657, 708
BclI	TGATCA	1 cut(s)	255
BcoDI	GTCTC	1 cut(s)	242
BfaI	CTAG	1 cut(s)	197
BfuAI	ACCTGC	2 cut(s)	706, 784
BisI	GCNGC	1 cut(s)	827
BlsI	GCNGC	1 cut(s)	828
BmcAI	AGTACT	1 cut(s)	491
Bme1390I	CCNGG	4 cut(s)	224, 349, 657, 708
Bme18I	GGWCC	3 cut(s)	151, 718, 834
BmeRI	GACNNNNNGTC	1 cut(s)	37
BmgT120I	GGNCC	5 cut(s)	151, 161, 718, 834, 908
BmiI	GGNNCC	2 cut(s)	163, 705
BmrFI	CCNGG	4 cut(s)	224, 349, 657, 708
BmsI	GCATC	3 cut(s)	109, 780, 886
BpmI	CTGGAG	1 cut(s)	415
BpuEI	CTTGAG	2 cut(s)	131, 548
Bsa29I	ATCGAT	1 cut(s)	866
BsaBI	GATNNNNATC	1 cut(s)	866
BsaJI	CCNNGG	4 cut(s)	157, 707, 837, 915
Bsc4I	CCNNNNNNNGG	3 cut(s)	396, 700, 951
Bse1I	ACTGG	2 cut(s)	360, 398
Bse3DI	GCAATG	1 cut(s)	415
Bse8I	GATNNNNATC	1 cut(s)	866
BseBI	CCWGG	4 cut(s)	224, 349, 657, 708
BseCI	ATCGAT	1 cut(s)	866
BseDI	CCNNGG	4 cut(s)	157, 707, 837, 915
BseGI	GGATG	1 cut(s)	684
BseJI	GATNNNNATC	1 cut(s)	866
BseLI	CCNNNNNNNGG	3 cut(s)	396, 700, 951
BseMI	GCAATG	1 cut(s)	415
BseMII	CTCAG	2 cut(s)	339, 509
BseNI	ACTGG	2 cut(s)	360, 398
BseRI	GAGGAG	1 cut(s)	115
BseXI	GCAGC	1 cut(s)	813
BsgI	GTGCAG	1 cut(s)	478
Bsh1285I	CGRYCG	1 cut(s)	88
BshFI	GGCC	3 cut(s)	162, 451, 910
BshNI	GGYRCC	1 cut(s)	703
BshVI	ATCGAT	1 cut(s)	866
BsiEI	CGRYCG	1 cut(s)	88
BsiHKAI	GWGCWC	1 cut(s)	924
BslFI	GGGAC	2 cut(s)	41, 413
BslI	CCNNNNNNNGG	3 cut(s)	396, 700, 951
BsmAI	GTCTC	1 cut(s)	242
BsmFI	GGGAC	2 cut(s)	41, 413
BsnI	GGCC	3 cut(s)	162, 451, 910
Bsp1286I	GDGCHC	1 cut(s)	924
Bsp143I	GATC	3 cut(s)	142, 255, 867
Bsp19I	CCATGG	1 cut(s)	157
BspANI	GGCC	3 cut(s)	162, 451, 910
BspCNI	CTCAG	2 cut(s)	338, 510
BspDI	ATCGAT	1 cut(s)	866
BspLI	GGNNCC	2 cut(s)	163, 705
BspMI	ACCTGC	2 cut(s)	706, 784
BspPI	GGATC	1 cut(s)	862
BspT107I	GGYRCC	1 cut(s)	703
BsrDI	GCAATG	1 cut(s)	415
BsrI	ACTGG	2 cut(s)	360, 398
BssECI	CCNNGG	4 cut(s)	157, 707, 837, 915
BssMI	GATC	3 cut(s)	142, 255, 867
BssT1I	CCWWGG	2 cut(s)	157, 915
Bst2UI	CCWGG	4 cut(s)	224, 349, 657, 708
Bst4CI	ACNGT	4 cut(s)	89, 809, 838, 884
BstAPI	GCANNNNNTGC	1 cut(s)	896
BstC8I	GCNNGC	2 cut(s)	202, 912
BstDEI	CTNAG	6 cut(s)	325, 339, 407, 518, 722, 1018
BstDSI	CCRYGG	2 cut(s)	157, 837
BstF5I	GGATG	1 cut(s)	684
BstKTI	GATC	3 cut(s)	145, 258, 870
BstMAI	GTCTC	1 cut(s)	242
BstMBI	GATC	3 cut(s)	142, 255, 867
BstMCI	CGRYCG	1 cut(s)	88
BstMWI	GCNNNNNNNGC	3 cut(s)	523, 712, 896
BstNI	CCWGG	4 cut(s)	224, 349, 657, 708
BstNSI	RCATGY	2 cut(s)	204, 268
BstSCI	CCNGG	4 cut(s)	222, 347, 655, 706
BstV1I	GCAGC	1 cut(s)	813
BstXI	CCANNNNNNTGG	1 cut(s)	212
Bsu15I	ATCGAT	1 cut(s)	866
BsuRI	GGCC	3 cut(s)	162, 451, 910
BsuTUI	ATCGAT	1 cut(s)	866
BtgI	CCRYGG	2 cut(s)	157, 837
BtgZI	GCGATG	1 cut(s)	914
BtsCI	GGATG	1 cut(s)	684
BveI	ACCTGC	2 cut(s)	706, 784
Cac8I	GCNNGC	2 cut(s)	202, 912
Cfr13I	GGNCC	5 cut(s)	151, 161, 718, 834, 908
ClaI	ATCGAT	1 cut(s)	866
CseI	GACGC	1 cut(s)	677
Csp6I	GTAC	3 cut(s)	322, 490, 814
CviQI	GTAC	3 cut(s)	322, 490, 814
DdeI	CTNAG	6 cut(s)	325, 339, 407, 518, 722, 1018
DpnI	GATC	3 cut(s)	144, 257, 869
DpnII	GATC	3 cut(s)	142, 255, 867
DraI	TTTAAA	1 cut(s)	979
DriI	GACNNNNNGTC	1 cut(s)	37
Eam1105I	GACNNNNNGTC	1 cut(s)	37
Ecl136II	GAGCTC	1 cut(s)	922
Eco130I	CCWWGG	2 cut(s)	157, 915
Eco24I	GRGCYC	1 cut(s)	924
Eco32I	GATATC	1 cut(s)	864
Eco47I	GGWCC	3 cut(s)	151, 718, 834
Eco53kI	GAGCTC	1 cut(s)	922
EcoICRI	GAGCTC	1 cut(s)	922
EcoO109I	RGGNCCY	2 cut(s)	151, 718
EcoRII	CCWGG	4 cut(s)	222, 347, 655, 706
EcoRV	GATATC	1 cut(s)	864
EcoT14I	CCWWGG	2 cut(s)	157, 915
EcoT38I	GRGCYC	1 cut(s)	924
ErhI	CCWWGG	2 cut(s)	157, 915
FaqI	GGGAC	2 cut(s)	41, 413
FauNDI	CATATG	1 cut(s)	600
FbaI	TGATCA	1 cut(s)	255
Fnu4HI	GCNGC	1 cut(s)	827
FokI	GGATG	1 cut(s)	671
FriOI	GRGCYC	1 cut(s)	924
Fsp4HI	GCNGC	1 cut(s)	827
FspBI	CTAG	1 cut(s)	197
GluI	GCNGC	1 cut(s)	827
GsuI	CTGGAG	1 cut(s)	415
HaeIII	GGCC	3 cut(s)	162, 451, 910
HgaI	GACGC	1 cut(s)	677
HincII	GTYRAC	1 cut(s)	748
HindII	GTYRAC	1 cut(s)	748
HphI	GGTGA	3 cut(s)	238, 497, 794
Hpy166II	GTNNAC	3 cut(s)	49, 629, 748
Hpy188I	TCNGA	8 cut(s)	74, 85, 111, 118, 175, 328, 541, 856
Hpy188III	TCNNGA	5 cut(s)	245, 373, 431, 952, 988
Hpy8I	GTNNAC	3 cut(s)	49, 629, 748
HpyAV	CCTTC	5 cut(s)	69, 88, 345, 698, 775
HpyCH4III	ACNGT	4 cut(s)	89, 809, 838, 884
HpyCH4IV	ACGT	1 cut(s)	304
HpyCH4V	TGCA	5 cut(s)	415, 495, 715, 793, 829
HpyF10VI	GCNNNNNNNGC	3 cut(s)	523, 712, 896
HpyF3I	CTNAG	6 cut(s)	325, 339, 407, 518, 722, 1018
HpySE526I	ACGT	1 cut(s)	304
Ksp22I	TGATCA	1 cut(s)	255
Kzo9I	GATC	3 cut(s)	142, 255, 867
LmnI	GCTCC	2 cut(s)	475, 919
Lsp1109I	GCAGC	1 cut(s)	813
LweI	GCATC	3 cut(s)	109, 780, 886
MaeI	CTAG	1 cut(s)	197
MaeII	ACGT	1 cut(s)	304
MalI	GATC	3 cut(s)	144, 257, 869
MboI	GATC	3 cut(s)	142, 255, 867
MboII	GAAGA	2 cut(s)	211, 328
MhlI	GDGCHC	1 cut(s)	924
MluCI	AATT	9 cut(s)	189, 293, 383, 610, 678, 798, 844, 850, 983
MmeI	TCCRAC	2 cut(s)	108, 414
MseI	TTAA	2 cut(s)	573, 978
MslI	CAYNNNNRTG	1 cut(s)	500
MspR9I	CCNGG	4 cut(s)	224, 349, 657, 708
MvaI	CCWGG	4 cut(s)	224, 349, 657, 708
MwoI	GCNNNNNNNGC	3 cut(s)	523, 712, 896
NcoI	CCATGG	1 cut(s)	157
NdeI	CATATG	1 cut(s)	600
NdeII	GATC	3 cut(s)	142, 255, 867
NlaIV	GGNNCC	2 cut(s)	163, 705
NspI	RCATGY	2 cut(s)	204, 268
OliI	CACNNNNGTG	1 cut(s)	500
PaeI	GCATGC	1 cut(s)	204
PciI	ACATGT	1 cut(s)	264
PflFI	GACNNNGTC	1 cut(s)	437
PkrI	GCNGC	1 cut(s)	828
PpuMI	RGGWCCY	2 cut(s)	151, 718
PscI	ACATGT	1 cut(s)	264
Psp124BI	GAGCTC	1 cut(s)	924
Psp5II	RGGWCCY	2 cut(s)	151, 718
Psp6I	CCWGG	4 cut(s)	222, 347, 655, 706
PspGI	CCWGG	4 cut(s)	222, 347, 655, 706
PspN4I	GGNNCC	2 cut(s)	163, 705
PspPI	GGNCC	5 cut(s)	151, 161, 718, 834, 908
PspPPI	RGGWCCY	2 cut(s)	151, 718
PsyI	GACNNNGTC	1 cut(s)	437
RsaI	GTAC	3 cut(s)	323, 491, 815
RsaNI	GTAC	3 cut(s)	322, 490, 814
RseI	CAYNNNNRTG	1 cut(s)	500
SacI	GAGCTC	1 cut(s)	924
SaqAI	TTAA	2 cut(s)	573, 978
SatI	GCNGC	1 cut(s)	827
Sau3AI	GATC	3 cut(s)	142, 255, 867
Sau96I	GGNCC	5 cut(s)	151, 161, 718, 834, 908
ScaI	AGTACT	1 cut(s)	491
ScrFI	CCNGG	4 cut(s)	224, 349, 657, 708
SduI	GDGCHC	1 cut(s)	924
SfaNI	GCATC	3 cut(s)	109, 780, 886
SinI	GGWCC	3 cut(s)	151, 718, 834
SmiMI	CAYNNNNRTG	1 cut(s)	500
SmlI	CTYRAG	2 cut(s)	146, 527
SmoI	CTYRAG	2 cut(s)	146, 527
SphI	GCATGC	1 cut(s)	204
Sse9I	AATT	9 cut(s)	189, 293, 383, 610, 678, 798, 844, 850, 983
SspI	AATATT	1 cut(s)	778
SspMI	CTAG	1 cut(s)	197
SstI	GAGCTC	1 cut(s)	924
StyD4I	CCNGG	4 cut(s)	222, 347, 655, 706
StyI	CCWWGG	2 cut(s)	157, 915
TaaI	ACNGT	4 cut(s)	89, 809, 838, 884
TaiI	ACGT	1 cut(s)	307
TaqI	TCGA	1 cut(s)	866
TasI	AATT	9 cut(s)	189, 293, 383, 610, 678, 798, 844, 850, 983
TatI	WGTACW	3 cut(s)	321, 489, 813
Tru1I	TTAA	2 cut(s)	573, 978
Tru9I	TTAA	2 cut(s)	573, 978
TseI	GCWGC	1 cut(s)	826
TspDTI	ATGAA	1 cut(s)	757
TspGWI	ACGGA	1 cut(s)	680
Tth111I	GACNNNGTC	1 cut(s)	437
VpaK11BI	GGWCC	3 cut(s)	151, 718, 834
XapI	RAATTY	1 cut(s)	983
XceI	RCATGY	2 cut(s)	204, 268
XspI	CTAG	1 cut(s)	197
ZrmI	AGTACT	1 cut(s)	491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.