Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002796

Physical Location & Seq

Genomic Coordinates Reverse (-)

60447508 .. 60448802

Gene Structure 1295 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0484300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGTTCTCAAAGCCCCACTGTTTTCAGATGAATCAAATACCATCCCCCATGTCCAAGTCTCCAATGAGCTCGCCGGAGATGGACGCCGGAATATGGAGCAACTTACCGGAGGAACTCCTGGAGCGTATTCTCTCCATGCTGCCTCTCAAAACCTTCATGGTTCTGAGATCAACTTGCAAGCATTTCAAGTCTCTGTTATTCTCTCCCACTTTCATTTCCAAGCACTCTTCCTCCAATTCCTCACCCTTCTCTTCTTTTCTCATGCTTTCTCACCCGCAGTGCTATCCCGACTTCCCTCTCTACGACTCGCAGCTCTGCGCGTGGCGCAGCTTCGCTCTTTCACTCTCGGAATTGCTACCCTGCGCTGCTGCAGGACCAGTCTCTCTGCTCTCCATCTCCAATGGGCTGCTCTGTTTCTCTCTGCCCAGCTCGTCTTCCTTTGTTGTCTGTAACTTCTTGACCAAGTCATCGAGAGTGATCGAATACCCTACCTACCCTTTTCATTTTGAGCTGCTTACTCTGGTTTCCACTCCAGTTGGGTACAATATCTTCATGCTCTCTTCTGAGTCTTCCACCAAGACCAGAACCTTTGTATATGATTCGAAGGTCCAGTCTTGGCAAAATTTAATCTCATTGGATACAATTCTCAGTGACAATCATCATCAAGAAGGTGTTCATTTCAATGGGTCTCTCTACTTTTCGACCCCGGAGCCATTCTCAATTGTCAACCTTCATTTGGAGAGTGGTAAATGGGAGAGACACAATACTGAACTCCCCGGAGAGCTCGTTTTTGTTCGATTAGTGAGTGATGAAGGAAAAGGGAAGATGTATTTGATTGGTGGGATTGGTAGGAATGGGATTTCAAGGAGAATGAAAATCTGGGAACTGTGTGAAGGAAAGAATTGGGTGGAGATTGAGAGTGTGCCTGAAATGATGTGCAGAAAGATAATGTCAGTTTGTTACCATAATTACGAACATCTCTATTGCTTTTGGCATCAGGGTTTAATCTGTGTTTGCTGCTATGCGTGGCCTGAGATTTTGTATTACAAGGTTTCGAGGAGGACTTGGCATTGGCTCCCCAAAAGCCCTTCGGTGCCGGAAAGATGGGCTTGTGGCTTCAGGTGGTTTTCTTTTGTGCCGGAGTTGTATGCTTCAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002229 GO:0002239 GO:0006082 GO:0006725 GO:0006950 GO:0006952 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009056 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009696 GO:0009719 GO:0009725 GO:0009751 GO:0009987 GO:0010033 GO:0010150 GO:0010817 GO:0014070 GO:0016054 GO:0016999 GO:0017001 GO:0017144 GO:0018958 GO:0019336 GO:0019439 GO:0019752 GO:0032501 GO:0032502 GO:0032787 GO:0042221 GO:0042445 GO:0042447 GO:0042493 GO:0042537 GO:0042737 GO:0043207 GO:0043436 GO:0044237 GO:0044248 GO:0044281 GO:0044282 GO:0046244 GO:0046395 GO:0046677 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0065008 GO:0071704 GO:0072329 GO:0090693 GO:0098542 GO:0099402 GO:1901360 GO:1901361 GO:1901575 GO:1901615 GO:1901616 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

386

Amino Acids

44.34

Weight (kDa)

7.54

Isoelectric Point (pI)

62.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	32 - 71	2.5e-09	F-box domain
F-box-like	PF12937	32 - 70	4e-07	F-box-like
FBA_1	PF07734	133 - 235	5.7e-07	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10490 AT4G10500
fragaria_vesca	FvH4_5g10430 FvH4_7g17840
malus_domestica	MD01G1090000.v1.1 MD06G1124100.v1.1 MD14G1140400.v1.1 MD14G1140700.v1.1 MD14G1141000.v1.1 MD14G1141200.v1.1
prunus_persica	Prupe.2G199700_v2.0.a1 Prupe.2G200200_v2.0.a1 Prupe.2G200200_v2.0.a1 Prupe.2G200200_v2.0.a1 Prupe.5G134500_v2.0.a1 Prupe.5G134700_v2.0.a1
pyrus_communis	pycom01g11450 pycom06g11450 pycom14g11590
rosa_chinensis	RchiOBHm_Chr1g0361261 RchiOBHm_Chr7g0187801
rosa_laevigata	RLG00000004755 RLG00000027730
rosa_multiflora	Rmu_sc0002119.1_g000038 Rmu_sc0004483.1_g000038
rosa_roxburghii	Rroxscaffold_3G00267060 Rroxscaffold_4G00295120
rosa_rugosa	Rorug01G0287700 Rorug01G0287700 Rorug02G0186700 Rorug06G0484300
rosa_samantha	Rh1AG299000 Rh1BG262900 Rh1CG280300 Rh1DG292900 Rh7CG090300 Rh7DG091900
rosa_wichuraiana	Rw1G026450 Rw7G007720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1093
AccII	CGCG	1 cut(s)	320
AciI	CCGC	1 cut(s)	275
AcsI	RAATTY	1 cut(s)	622
AcuI	CTGAAG	2 cut(s)	1102, 1137
AcyI	GRCGYC	1 cut(s)	84
AfaI	GTAC	1 cut(s)	542
AfiI	CCNNNNNNNGG	2 cut(s)	93, 736
AgsI	TTSAA	3 cut(s)	187, 682, 864
AjnI	CCWGG	1 cut(s)	117
AluBI	AGCT	6 cut(s)	69, 313, 330, 429, 511, 784
AluI	AGCT	6 cut(s)	69, 313, 330, 429, 511, 784
Alw21I	GWGCWC	2 cut(s)	71, 786
Alw26I	GTCTC	5 cut(s)	63, 195, 385, 693, 751
AoxI	GGCC	1 cut(s)	1028
ApeKI	GCWGC	8 cut(s)	139, 310, 327, 365, 368, 406, 511, 1017
ApoI	RAATTY	1 cut(s)	622
ArsI	GACNNNNNNTTYG	2 cut(s)	596, 628
Asp700I	GAANNNNTTC	1 cut(s)	672
AspLEI	GCGC	3 cut(s)	320, 327, 365
AspS9I	GGNCC	2 cut(s)	374, 607
AsuC2I	CCSGG	2 cut(s)	707, 777
AsuHPI	GGTGA	2 cut(s)	234, 263
AsuII	TTCGAA	1 cut(s)	602
AvaII	GGWCC	2 cut(s)	374, 607
BanI	GGYRCC	1 cut(s)	1093
BanII	GRGCYC	2 cut(s)	71, 786
BarI	GAAGNNNNNNTAC	2 cut(s)	533, 565
BbsI	GAAGAC	2 cut(s)	426, 561
Bbv12I	GWGCWC	2 cut(s)	71, 786
BbvI	GCAGC	8 cut(s)	126, 322, 339, 352, 355, 393, 498, 1004
BccI	CCATC	4 cut(s)	49, 73, 401, 1098
BciT130I	CCWGG	1 cut(s)	119
BciVI	GTATCC	1 cut(s)	631
BcnI	CCSGG	2 cut(s)	707, 777
BcoDI	GTCTC	5 cut(s)	63, 195, 385, 693, 751
BfmI	CTRYAG	1 cut(s)	369
BfuI	GTATCC	1 cut(s)	631
BisI	GCNGC	8 cut(s)	140, 311, 328, 366, 369, 407, 512, 1018
BlsI	GCNGC	8 cut(s)	141, 312, 329, 367, 370, 408, 513, 1019
Bme1390I	CCNGG	3 cut(s)	119, 707, 777
Bme18I	GGWCC	2 cut(s)	374, 607
BmgT120I	GGNCC	2 cut(s)	374, 607
BmiI	GGNNCC	3 cut(s)	711, 1076, 1095
BmrFI	CCNGG	3 cut(s)	119, 707, 777
BmsI	GCATC	1 cut(s)	1003
BpiI	GAAGAC	2 cut(s)	426, 561
BplI	GAGNNNNNCTC	2 cut(s)	701, 733
BpmI	CTGGAG	2 cut(s)	140, 516
Bpu14I	TTCGAA	1 cut(s)	602
BpuMI	CCSGG	2 cut(s)	707, 777
BsaHI	GRCGYC	1 cut(s)	84
BsaI	GGTCTC	1 cut(s)	693
BsaJI	CCNNGG	2 cut(s)	705, 775
BsaWI	WCCGGW	1 cut(s)	106
BsaXI	ACNNNNNCTCC	4 cut(s)	215, 245, 771, 801
Bsc4I	CCNNNNNNNGG	2 cut(s)	93, 736
Bse1I	ACTGG	3 cut(s)	377, 533, 610
BseBI	CCWGG	1 cut(s)	119
BseDI	CCNNGG	2 cut(s)	705, 775
BseGI	GGATG	1 cut(s)	41
BseLI	CCNNNNNNNGG	2 cut(s)	93, 736
BseMII	CTCAG	4 cut(s)	155, 555, 661, 1023
BseNI	ACTGG	3 cut(s)	377, 533, 610
BseRI	GAGGAG	1 cut(s)	1072
BseXI	GCAGC	8 cut(s)	126, 322, 339, 352, 355, 393, 498, 1004
BseYI	CCCAGC	1 cut(s)	425
BsgI	GTGCAG	1 cut(s)	958
Bsh1236I	CGCG	1 cut(s)	320
BshFI	GGCC	1 cut(s)	1030
BshNI	GGYRCC	1 cut(s)	1093
BsiHKAI	GWGCWC	2 cut(s)	71, 786
BsiSI	CCGG	7 cut(s)	74, 87, 107, 707, 777, 1097, 1139
BslI	CCNNNNNNNGG	2 cut(s)	93, 736
BsmAI	GTCTC	5 cut(s)	63, 195, 385, 693, 751
BsnI	GGCC	1 cut(s)	1030
Bso31I	GGTCTC	1 cut(s)	693
Bsp119I	TTCGAA	1 cut(s)	602
Bsp1286I	GDGCHC	2 cut(s)	71, 786
Bsp143I	GATC	2 cut(s)	167, 477
BspACI	CCGC	1 cut(s)	275
BspANI	GGCC	1 cut(s)	1030
BspCNI	CTCAG	4 cut(s)	156, 556, 660, 1024
BspFNI	CGCG	1 cut(s)	320
BspLI	GGNNCC	3 cut(s)	711, 1076, 1095
BspMAI	CTGCAG	1 cut(s)	373
BspT104I	TTCGAA	1 cut(s)	602
BspT107I	GGYRCC	1 cut(s)	1093
BspTNI	GGTCTC	1 cut(s)	693
BsrI	ACTGG	3 cut(s)	377, 533, 610
BssECI	CCNNGG	2 cut(s)	705, 775
BssMI	GATC	2 cut(s)	167, 477
BssNI	GRCGYC	1 cut(s)	84
Bst2UI	CCWGG	1 cut(s)	119
Bst4CI	ACNGT	2 cut(s)	20, 888
Bst6I	CTCTTC	3 cut(s)	232, 256, 565
BstACI	GRCGYC	1 cut(s)	84
BstBI	TTCGAA	1 cut(s)	602
BstC8I	GCNNGC	2 cut(s)	71, 179
BstDEI	CTNAG	4 cut(s)	164, 564, 647, 1032
BstF5I	GGATG	1 cut(s)	41
BstFNI	CGCG	1 cut(s)	320
BstHHI	GCGC	3 cut(s)	320, 327, 365
BstKTI	GATC	2 cut(s)	170, 480
BstMAI	GTCTC	5 cut(s)	63, 195, 385, 693, 751
BstMBI	GATC	2 cut(s)	167, 477
BstMWI	GCNNNNNNNGC	1 cut(s)	324
BstNI	CCWGG	1 cut(s)	119
BstSCI	CCNGG	3 cut(s)	117, 705, 775
BstSFI	CTRYAG	1 cut(s)	369
BstUI	CGCG	1 cut(s)	320
BstV1I	GCAGC	8 cut(s)	126, 322, 339, 352, 355, 393, 498, 1004
BstV2I	GAAGAC	2 cut(s)	426, 561
BsuI	GTATCC	1 cut(s)	631
BsuRI	GGCC	1 cut(s)	1030
BtsCI	GGATG	1 cut(s)	41
BtsI	GCAGTG	1 cut(s)	284
BtsIMutI	CAGTG	4 cut(s)	16, 284, 655, 1161
Cac8I	GCNNGC	2 cut(s)	71, 179
CfoI	GCGC	3 cut(s)	320, 327, 365
Cfr13I	GGNCC	2 cut(s)	374, 607
CseI	GACGC	1 cut(s)	92
Csp6I	GTAC	1 cut(s)	541
CspCI	CAANNNNNGTGG	2 cut(s)	517, 552
CviAII	CATG	5 cut(s)	49, 136, 157, 262, 553
CviQI	GTAC	1 cut(s)	541
DdeI	CTNAG	4 cut(s)	164, 564, 647, 1032
DpnI	GATC	2 cut(s)	169, 479
DpnII	GATC	2 cut(s)	167, 477
Eam1104I	CTCTTC	3 cut(s)	232, 256, 565
EarI	CTCTTC	3 cut(s)	232, 256, 565
Ecl136II	GAGCTC	2 cut(s)	69, 784
Eco24I	GRGCYC	2 cut(s)	71, 786
Eco31I	GGTCTC	1 cut(s)	693
Eco47I	GGWCC	2 cut(s)	374, 607
Eco53kI	GAGCTC	2 cut(s)	69, 784
Eco57I	CTGAAG	2 cut(s)	1102, 1137
EcoICRI	GAGCTC	2 cut(s)	69, 784
EcoRII	CCWGG	1 cut(s)	117
EcoT38I	GRGCYC	2 cut(s)	71, 786
FaeI	CATG	5 cut(s)	52, 139, 160, 265, 556
FalI	AAGNNNNNCTT	2 cut(s)	1093, 1125
FatI	CATG	5 cut(s)	48, 135, 156, 261, 552
FauI	CCCGC	1 cut(s)	282
Fnu4HI	GCNGC	8 cut(s)	140, 311, 328, 366, 369, 407, 512, 1018
FokI	GGATG	1 cut(s)	28
FriOI	GRGCYC	2 cut(s)	71, 786
Fsp4HI	GCNGC	8 cut(s)	140, 311, 328, 366, 369, 407, 512, 1018
GlaI	GCGC	3 cut(s)	319, 326, 364
GluI	GCNGC	8 cut(s)	140, 311, 328, 366, 369, 407, 512, 1018
GsaI	CCCAGC	1 cut(s)	429
GsuI	CTGGAG	2 cut(s)	140, 516
HaeIII	GGCC	1 cut(s)	1030
HapII	CCGG	7 cut(s)	74, 87, 107, 707, 777, 1097, 1139
HgaI	GACGC	1 cut(s)	92
HhaI	GCGC	3 cut(s)	320, 327, 365
Hin1I	GRCGYC	1 cut(s)	84
Hin1II	CATG	5 cut(s)	52, 139, 160, 265, 556
Hin6I	GCGC	3 cut(s)	318, 325, 363
HinP1I	GCGC	3 cut(s)	318, 325, 363
HincII	GTYRAC	1 cut(s)	727
HindII	GTYRAC	1 cut(s)	727
HinfI	GANTC	4 cut(s)	31, 305, 566, 599
HpaII	CCGG	7 cut(s)	74, 87, 107, 707, 777, 1097, 1139
HphI	GGTGA	2 cut(s)	234, 263
Hpy166II	GTNNAC	1 cut(s)	727
Hpy188I	TCNGA	4 cut(s)	27, 165, 349, 565
Hpy188III	TCNNGA	4 cut(s)	287, 457, 471, 665
Hpy8I	GTNNAC	1 cut(s)	727
HpyAV	CCTTC	8 cut(s)	163, 256, 598, 662, 740, 806, 887, 1098
HpyCH4III	ACNGT	2 cut(s)	20, 888
HpyCH4V	TGCA	3 cut(s)	177, 371, 939
HpyF10VI	GCNNNNNNNGC	1 cut(s)	324
HpyF3I	CTNAG	4 cut(s)	164, 564, 647, 1032
Hsp92I	GRCGYC	1 cut(s)	84
Hsp92II	CATG	5 cut(s)	52, 139, 160, 265, 556
HspAI	GCGC	3 cut(s)	318, 325, 363
Kzo9I	GATC	2 cut(s)	167, 477
LmnI	GCTCC	4 cut(s)	96, 121, 709, 1080
Lsp1109I	GCAGC	8 cut(s)	126, 322, 339, 352, 355, 393, 498, 1004
LweI	GCATC	1 cut(s)	1003
MaeIII	GTNAC	3 cut(s)	449, 650, 959
MalI	GATC	2 cut(s)	169, 479
MboI	GATC	2 cut(s)	167, 477
MboII	GAAGA	7 cut(s)	219, 243, 426, 541, 552, 561, 835
MfeI	CAATTG	1 cut(s)	720
MhlI	GDGCHC	2 cut(s)	71, 786
MluCI	AATT	7 cut(s)	235, 350, 622, 642, 720, 901, 967
MlyI	GAGTC	2 cut(s)	299, 575
MnlI	CCTC	7 cut(s)	103, 153, 241, 250, 306, 1050, 1053
MroXI	GAANNNNTTC	1 cut(s)	672
MseI	TTAA	2 cut(s)	626, 1004
MslI	CAYNNNNRTG	1 cut(s)	681
MspI	CCGG	7 cut(s)	74, 87, 107, 707, 777, 1097, 1139
MspR9I	CCNGG	3 cut(s)	119, 707, 777
MunI	CAATTG	1 cut(s)	720
MvaI	CCWGG	1 cut(s)	119
MvnI	CGCG	1 cut(s)	320
MwoI	GCNNNNNNNGC	1 cut(s)	324
NciI	CCSGG	2 cut(s)	707, 777
NdeII	GATC	2 cut(s)	167, 477
NlaIII	CATG	5 cut(s)	52, 139, 160, 265, 556
NlaIV	GGNNCC	3 cut(s)	711, 1076, 1095
NmuCI	GTSAC	1 cut(s)	650
NspV	TTCGAA	1 cut(s)	602
PdmI	GAANNNNTTC	1 cut(s)	672
PfeI	GAWTC	2 cut(s)	31, 599
PflFI	GACNNNGTC	1 cut(s)	463
PfoI	TCCNGGA	1 cut(s)	117
PkrI	GCNGC	8 cut(s)	141, 312, 329, 367, 370, 408, 513, 1019
PleI	GAGTC	2 cut(s)	299, 574
PpsI	GAGTC	2 cut(s)	299, 574
Psp124BI	GAGCTC	2 cut(s)	71, 786
Psp6I	CCWGG	1 cut(s)	117
PspFI	CCCAGC	1 cut(s)	425
PspGI	CCWGG	1 cut(s)	117
PspN4I	GGNNCC	3 cut(s)	711, 1076, 1095
PspPI	GGNCC	2 cut(s)	374, 607
PstI	CTGCAG	1 cut(s)	373
PsyI	GACNNNGTC	1 cut(s)	463
RsaI	GTAC	1 cut(s)	542
RsaNI	GTAC	1 cut(s)	541
RseI	CAYNNNNRTG	1 cut(s)	681
SacI	GAGCTC	2 cut(s)	71, 786
SaqAI	TTAA	2 cut(s)	626, 1004
SatI	GCNGC	8 cut(s)	140, 311, 328, 366, 369, 407, 512, 1018
Sau3AI	GATC	2 cut(s)	167, 477
Sau96I	GGNCC	2 cut(s)	374, 607
SchI	GAGTC	2 cut(s)	299, 575
ScrFI	CCNGG	3 cut(s)	119, 707, 777
SduI	GDGCHC	2 cut(s)	71, 786
SfaNI	GCATC	1 cut(s)	1003
SfcI	CTRYAG	1 cut(s)	369
SfuI	TTCGAA	1 cut(s)	602
SinI	GGWCC	2 cut(s)	374, 607
SmiMI	CAYNNNNRTG	1 cut(s)	681
Sse9I	AATT	7 cut(s)	235, 350, 622, 642, 720, 901, 967
SsiI	CCGC	1 cut(s)	275
SstI	GAGCTC	2 cut(s)	71, 786
StyD4I	CCNGG	3 cut(s)	117, 705, 775
TaaI	ACNGT	2 cut(s)	20, 888
TaqI	TCGA	6 cut(s)	470, 480, 602, 701, 796, 1055
TasI	AATT	7 cut(s)	235, 350, 622, 642, 720, 901, 967
TfiI	GAWTC	2 cut(s)	31, 599
Tru1I	TTAA	2 cut(s)	626, 1004
Tru9I	TTAA	2 cut(s)	626, 1004
TscAI	CASTG	4 cut(s)	23, 284, 655, 1161
TseFI	GTSAC	1 cut(s)	650
TseI	GCWGC	8 cut(s)	139, 310, 327, 365, 368, 406, 511, 1017
Tsp45I	GTSAC	1 cut(s)	650
TspDTI	ATGAA	9 cut(s)	44, 145, 202, 491, 541, 665, 722, 825, 887
TspRI	CASTG	4 cut(s)	23, 284, 655, 1161
Tth111I	GACNNNGTC	1 cut(s)	463
VpaK11BI	GGWCC	2 cut(s)	374, 607
XapI	RAATTY	1 cut(s)	622
XmnI	GAANNNNTTC	1 cut(s)	672

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.