Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002796

Physical Location & Seq

Genomic Coordinates Reverse (-)

17380736 .. 17383096

Gene Structure 2361 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0186700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2361 bp

ATGACCCTGTATATGCCCTTATTCAGGTCATGCACAACCCTACGAACACTGACCCAACTCCACGCCCATCTCCTAGTCTCAGGTCTCCACAGAGACCCACAAGCCTCCACCAAGCTCATCGAGTCCTACTCCCAACTGGGTTCCCTCCACTCCTCAACCCAGCTCTTTCAAACCTTCCCTAACCAAGACCCTTTCATGTGGGGCGTCCTCATCAAATGCTTCATGTGGAACCGCCGCTTCCACGAAGCCATCTCACTCTACCAAGAAATGCTGCAATGCTCAGTGGGCATGAGTAGGTTTATATTCCCTTCTGTTTTGAGAGCCTGTTCGGGCTGTGGTGAGCTCAGTGTGGGTAGGAAGGTCCATGGGAGGATAGTGAAATGTGGGTTCGACGACTCGGATGCTGTGGTCGAGACCGCATTGCTTGGTTTGTATGGGGAGCTGGGGTGTTTGGATGATGCAAGGAAGGTGTTTGTTGAAATGCATGTGAGAGACGCCGTGTCGTGGAGTTCGGTTATCTTGTGTTGTGTGGAGAATGGAGAGGTGAGTGAAGGGTTGGAGATGTTCCGTGGGATGGTGATGGAAGAAGGTGTTGTACCGGATTCGGTCACAATGCTTAGTGTAGCTGAGGCTTGTGGGAAGTTGGGGTGGTGGAGAGGAGCTAGGTCAGTGCATGGTTTTGTTGTTAGAAGGGAGTTTAGAAAGGACGAGTCTTTGGATAGTTCTCTGATTACAATGTACAGCAAGTGTGGCGACTTGAAGAGTCCGGAAAGGATTTTTCATAATGTTGCTCATCGGCACACTGCATCTTGGACCGCAATGATTTCCTGCTACAATCAAGCTGGTTCTTTCTCAGAAGCACTGGATGTTTTTGTTAAGATGCAGGAGTCTGGAGTGGAGCCGAATGCTGTGACGTTGATGTGCATTCTAATGTCTTGTGTTGGGTTAGGCTTGCTCAAAGAAGGGAAGTCTGTTCATGGATTTGTTATTAGAAAGGCTGTAGACCCTGACCTTGATTTTTTGGGGTCAGCATTGTTAGAGTTATATGCTGAAATTGGGGGACTAAGCTATAGTCAGAAAATTCTTAATATGATTGGAGTCAGAAATGTTGTTCCTTGGAATACAATTATTTCAGTTTATTGTCAGAAAGGTCTGCTGAGAGAGGCATTGCTACTCTTTGTGCAGATGCAGGCCCAAGGACTAATGCCAGATTCATTCAGCATGTCAAGTGCTCTCGCCGCTTGTGGAAAGATGGGTTTATTAGAGATTGGGCATCAGATACATGGTCATATAGTCAAACGAGGCTATTTGGATGAGTTTGTGTTGAACTCACTAATTGATATGTACTCAAAATGTGGGTTTGTAGATTCAGCATACATAATATTTGACGAGATGAAACATCCTGGTATCATAACATGGAATTCTATGATCTCGGGATTTTCTCGTAGTGGTAACTCTGTCATGGCTATCAGTCTTTTTGACCGAATTTATCTGAACCGTCTTGAGATTGATGAAGTCACCATTTTAAGTGTTATTCAAGCTTGCTCCGAATTAGGTTATTTAGAAAAGGGAAAATGGGTTCACCACAAGCTCATAACCTATGGTGTGAGGAAAGACCTCTATATTGATACAGCTTTAACTGACATGTATGCTAAGTGTGGTGACCTTCAGTCAGCTCAAGGTGTATTTGATACGATGGTAGAAAGAAGCGTTGTGTCTTGGAGTGTCATGATCGCTGGGTATGGAATACATGGCAAGATACGTGCTGCCATATCACTCTTTAGTCAAATGTTAGAAACTGGAATCGAACCAAATGAGGTTACATTCATGAATATTCTTTCAGCTTGTAGTCATGCAGGTGCTGTTGAAGAAGGGAGGTTATATTTTAGATCAATGAGGGATTTCGGCATTGAGCCCAATGCAGAACATTTTGCATGTATAGTTGACCTTCTAAGTCGAGCCGGTGATCTGAATGGAGCCTATGATATCATTAAATCAATACCATTCTCTGTTGATGCCAGCATATGGGGCGCCCTGCTCAATGGATGTCGAATCCACCAGAGGATGGACATGATTAAAAGCATCGAAAAAGACCTTTTATATATTAAGACAGATGACACTGGCTACTACACCTTATTTTCTAACATATATGCTGAAGGAGGGAACTGGGAGGAATTTGGGAATGTGAGATTAATGATGAAAGGTATTGGTCTGAGGAAGGTCCCTGGATACAGTGTAATTGAGATTGATAAGCGAGTGTATAGATTCGGAGCTGGAGATACTCCTCTTCCTCAAATGAAGGAGGTTTACGGGTTTTTGGAAAACTTTCAGTGTCCAACTCATGGAATCGGGATAACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002229 GO:0002239 GO:0006082 GO:0006725 GO:0006950 GO:0006952 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009056 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009696 GO:0009719 GO:0009725 GO:0009751 GO:0009987 GO:0010033 GO:0010150 GO:0010817 GO:0014070 GO:0016054 GO:0016999 GO:0017001 GO:0017144 GO:0018958 GO:0019336 GO:0019439 GO:0019752 GO:0032501 GO:0032502 GO:0032787 GO:0042221 GO:0042445 GO:0042447 GO:0042493 GO:0042537 GO:0042737 GO:0043207 GO:0043436 GO:0044237 GO:0044248 GO:0044281 GO:0044282 GO:0046244 GO:0046395 GO:0046677 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0065008 GO:0071704 GO:0072329 GO:0090693 GO:0098542 GO:0099402 GO:1901360 GO:1901361 GO:1901575 GO:1901615 GO:1901616 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

786

Amino Acids

87.65

Weight (kDa)

5.99

Isoelectric Point (pI)

37.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	268 - 310	3.6e-08	PPR repeat family
PPR	PF01535	270 - 299	1.7e-07	PPR repeat
PPR_2	PF13041	368 - 416	2.9e-10	PPR repeat family
PPR_1	PF12854	368 - 397	1.7e-06	PPR repeat
PPR	PF01535	372 - 400	8.1e-07	PPR repeat
PPR_2	PF13041	468 - 516	8.6e-07	PPR repeat family
PPR	PF01535	471 - 495	9e-06	PPR repeat
PPR_2	PF13041	570 - 617	1.4e-11	PPR repeat family
PPR	PF01535	572 - 602	5.6e-06	PPR repeat
E_motif	PF20431	698 - 748	8.7e-11	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10490 AT4G10500
fragaria_vesca	FvH4_5g10430 FvH4_7g17840
malus_domestica	MD01G1090000.v1.1 MD06G1124100.v1.1 MD14G1140400.v1.1 MD14G1140700.v1.1 MD14G1141000.v1.1 MD14G1141200.v1.1
prunus_persica	Prupe.2G199700_v2.0.a1 Prupe.2G200200_v2.0.a1 Prupe.2G200200_v2.0.a1 Prupe.2G200200_v2.0.a1 Prupe.5G134500_v2.0.a1 Prupe.5G134700_v2.0.a1
pyrus_communis	pycom01g11450 pycom06g11450 pycom14g11590
rosa_chinensis	RchiOBHm_Chr1g0361261 RchiOBHm_Chr7g0187801
rosa_laevigata	RLG00000004755 RLG00000027730
rosa_multiflora	Rmu_sc0002119.1_g000038 Rmu_sc0004483.1_g000038
rosa_roxburghii	Rroxscaffold_3G00267060 Rroxscaffold_4G00295120
rosa_rugosa	Rorug01G0287700 Rorug01G0287700 Rorug02G0186700 Rorug06G0484300
rosa_samantha	Rh1AG299000 Rh1BG262900 Rh1CG280300 Rh1DG292900 Rh7CG090300 Rh7DG091900
rosa_wichuraiana	Rw1G026450 Rw7G007720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1847
Acc36I	ACCTGC	1 cut(s)	1847
AccB1I	GGYRCC	1 cut(s)	2030
AccB7I	CCANNNNNTGG	3 cut(s)	2025, 2065, 2342
AccI	GTMKAC	1 cut(s)	1002
AccIII	TCCGGA	1 cut(s)	766
AciI	CCGC	5 cut(s)	232, 235, 417, 816, 1239
AcsI	RAATTY	4 cut(s)	1080, 1420, 1485, 2174
AcuI	CTGAAG	2 cut(s)	1652, 2175
AcyI	GRCGYC	3 cut(s)	204, 495, 2031
AfaI	GTAC	3 cut(s)	597, 740, 1346
AfiI	CCNNNNNNNGG	6 cut(s)	24, 504, 574, 2025, 2065, 2342
AflIII	ACRYGT	1 cut(s)	1644
AgsI	TTSAA	6 cut(s)	170, 479, 760, 1327, 1538, 1868
AhdI	GACNNNNNGTC	2 cut(s)	499, 1669
AjnI	CCWGG	2 cut(s)	1402, 2224
AloI	GAACNNNNNNTCC	2 cut(s)	1563, 1595
Alw21I	GWGCWC	2 cut(s)	345, 1234
Alw26I	GTCTC	5 cut(s)	82, 87, 89, 407, 486
AlwNI	CAGNNNCTG	1 cut(s)	1862
Ama87I	CYCGRG	1 cut(s)	1432
Aor13HI	TCCGGA	1 cut(s)	766
AoxI	GGCC	1 cut(s)	1191
ApeKI	GCWGC	2 cut(s)	271, 1766
ApoI	RAATTY	4 cut(s)	1080, 1420, 1485, 2174
AseI	ATTAAT	1 cut(s)	2192
Asp700I	GAANNNNTTC	1 cut(s)	2325
AspLEI	GCGC	1 cut(s)	2033
AspS9I	GGNCC	4 cut(s)	361, 813, 1192, 2221
AsuHPI	GGTGA	7 cut(s)	350, 556, 589, 1510, 1574, 1673, 1976
AvaI	CYCGRG	1 cut(s)	1432
AvaII	GGWCC	3 cut(s)	361, 813, 2221
BaeI	ACNNNNGTAYC	2 cut(s)	1683, 1716
BanI	GGYRCC	1 cut(s)	2030
BanII	GRGCYC	2 cut(s)	345, 1917
BarI	GAAGNNNNNNTAC	4 cut(s)	579, 611, 2291, 2323
Bbv12I	GWGCWC	2 cut(s)	345, 1234
BbvCI	CCTCAGC	1 cut(s)	627
BbvI	GCAGC	2 cut(s)	258, 1753
BccI	CCATC	7 cut(s)	75, 257, 568, 574, 1246, 1690, 2059
BceAI	ACGGC	1 cut(s)	482
BcgI	CGANNNNNNTGC	2 cut(s)	383, 417
BciT130I	CCWGG	2 cut(s)	1404, 2226
BciVI	GTATCC	1 cut(s)	2222
BcoDI	GTCTC	5 cut(s)	82, 87, 89, 407, 486
BfaI	CTAG	2 cut(s)	74, 663
BfmI	CTRYAG	2 cut(s)	999, 1069
BfoI	RGCGCY	1 cut(s)	2034
BfuAI	ACCTGC	1 cut(s)	1847
BfuI	GTATCC	1 cut(s)	2222
BisI	GCNGC	4 cut(s)	235, 272, 1239, 1767
BlsI	GCNGC	4 cut(s)	236, 273, 1240, 1768
Bme1390I	CCNGG	2 cut(s)	1404, 2226
Bme18I	GGWCC	3 cut(s)	361, 813, 2221
BmeRI	GACNNNNNGTC	2 cut(s)	499, 1669
BmeT110I	CYCGRG	1 cut(s)	1432
BmgT120I	GGNCC	4 cut(s)	361, 813, 1192, 2221
BmiI	GGNNCC	6 cut(s)	142, 230, 900, 1978, 2032, 2223
BmrFI	CCNGG	2 cut(s)	1404, 2226
BmrI	ACTGGG	2 cut(s)	146, 2176
BmsI	GCATC	8 cut(s)	391, 448, 815, 870, 1176, 1282, 2005, 2091
BmuI	ACTGGG	2 cut(s)	146, 2176
BplI	GAGNNNNNCTC	2 cut(s)	113, 145
BpmI	CTGGAG	2 cut(s)	912, 2295
Bpu10I	CCTNAGC	1 cut(s)	627
BpuEI	CTTGAG	2 cut(s)	1523, 1662
BsaAI	YACGTR	1 cut(s)	1763
BsaHI	GRCGYC	3 cut(s)	204, 495, 2031
BsaI	GGTCTC	3 cut(s)	87, 89, 407
BsaJI	CCNNGG	5 cut(s)	364, 568, 1115, 1195, 2224
BsaWI	WCCGGW	2 cut(s)	598, 766
BsaXI	ACNNNNNCTCC	2 cut(s)	431, 461
Bsc4I	CCNNNNNNNGG	6 cut(s)	24, 504, 574, 2025, 2065, 2342
Bse118I	RCCGGY	1 cut(s)	1961
Bse1I	ACTGG	5 cut(s)	141, 867, 1804, 2125, 2171
Bse3DI	GCAATG	4 cut(s)	281, 419, 825, 1166
BseAI	TCCGGA	1 cut(s)	766
BseBI	CCWGG	2 cut(s)	1404, 2226
BseDI	CCNNGG	5 cut(s)	364, 568, 1115, 1195, 2224
BseGI	GGATG	8 cut(s)	406, 460, 579, 871, 1318, 1399, 2051, 2070
BseLI	CCNNNNNNNGG	6 cut(s)	24, 504, 574, 2025, 2065, 2342
BseMI	GCAATG	4 cut(s)	281, 419, 825, 1166
BseMII	CTCAG	7 cut(s)	93, 294, 358, 618, 867, 1148, 2204
BseNI	ACTGG	5 cut(s)	141, 867, 1804, 2125, 2171
BseRI	GAGGAG	3 cut(s)	142, 672, 2274
BseXI	GCAGC	2 cut(s)	258, 1753
BseYI	CCCAGC	3 cut(s)	159, 442, 1736
BsgI	GTGCAG	1 cut(s)	1202
BshFI	GGCC	1 cut(s)	1193
BshNI	GGYRCC	1 cut(s)	2030
BsiHKAI	GWGCWC	2 cut(s)	345, 1234
BsiHKCI	CYCGRG	1 cut(s)	1432
BsiSI	CCGG	3 cut(s)	599, 767, 1962
BslFI	GGGAC	2 cut(s)	1074, 2207
BslI	CCNNNNNNNGG	6 cut(s)	24, 504, 574, 2025, 2065, 2342
BsmAI	GTCTC	5 cut(s)	82, 87, 89, 407, 486
BsmBI	CGTCTC	1 cut(s)	486
BsmFI	GGGAC	2 cut(s)	1074, 2207
BsmI	GAATGC	2 cut(s)	910, 924
BsnI	GGCC	1 cut(s)	1193
Bso31I	GGTCTC	3 cut(s)	87, 89, 407
BsoBI	CYCGRG	1 cut(s)	1432
Bsp1286I	GDGCHC	3 cut(s)	345, 1234, 1917
Bsp13I	TCCGGA	1 cut(s)	766
Bsp1407I	TGTACA	1 cut(s)	738
Bsp143I	GATC	4 cut(s)	1428, 1731, 1889, 1966
Bsp19I	CCATGG	1 cut(s)	364
BspACI	CCGC	5 cut(s)	232, 235, 417, 816, 1239
BspANI	GGCC	1 cut(s)	1193
BspCNI	CTCAG	7 cut(s)	92, 293, 357, 619, 866, 1149, 2205
BspEI	TCCGGA	1 cut(s)	766
BspHI	TCATGA	2 cut(s)	1728, 1827
BspLI	GGNNCC	6 cut(s)	142, 230, 900, 1978, 2032, 2223
BspMI	ACCTGC	1 cut(s)	1847
BspT107I	GGYRCC	1 cut(s)	2030
BspTNI	GGTCTC	3 cut(s)	87, 89, 407
BsrDI	GCAATG	4 cut(s)	281, 419, 825, 1166
BsrFI	RCCGGY	1 cut(s)	1961
BsrGI	TGTACA	1 cut(s)	738
BsrI	ACTGG	5 cut(s)	141, 867, 1804, 2125, 2171
BssAI	RCCGGY	1 cut(s)	1961
BssECI	CCNNGG	5 cut(s)	364, 568, 1115, 1195, 2224
BssMI	GATC	4 cut(s)	1428, 1731, 1889, 1966
BssNI	GRCGYC	3 cut(s)	204, 495, 2031
BssT1I	CCWWGG	3 cut(s)	364, 1115, 1195
Bst2UI	CCWGG	2 cut(s)	1404, 2226
Bst4CI	ACNGT	2 cut(s)	1499, 2234
Bst6I	CTCTTC	2 cut(s)	755, 2292
BstACI	GRCGYC	3 cut(s)	204, 495, 2031
BstAUI	TGTACA	1 cut(s)	738
BstBAI	YACGTR	1 cut(s)	1763
BstC8I	GCNNGC	4 cut(s)	953, 1191, 1543, 2020
BstDSI	CCRYGG	2 cut(s)	364, 568
BstEII	GGTNACC	1 cut(s)	1661
BstENI	CCTNNNNNAGG	1 cut(s)	22
BstF5I	GGATG	8 cut(s)	406, 460, 579, 871, 1318, 1399, 2051, 2070
BstH2I	RGCGCY	1 cut(s)	2034
BstHHI	GCGC	1 cut(s)	2033
BstKTI	GATC	4 cut(s)	1431, 1734, 1892, 1969
BstMAI	GTCTC	5 cut(s)	82, 87, 89, 407, 486
BstMBI	GATC	4 cut(s)	1428, 1731, 1889, 1966
BstMWI	GCNNNNNNNGC	4 cut(s)	285, 750, 1238, 2028
BstNI	CCWGG	2 cut(s)	1404, 2226
BstNSI	RCATGY	4 cut(s)	488, 1225, 1648, 1938
BstPI	GGTNACC	1 cut(s)	1661
BstSCI	CCNGG	2 cut(s)	1402, 2224
BstSFI	CTRYAG	2 cut(s)	999, 1069
BstV1I	GCAGC	2 cut(s)	258, 1753
BsuI	GTATCC	1 cut(s)	2222
BsuRI	GGCC	1 cut(s)	1193
BtgI	CCRYGG	2 cut(s)	364, 568
BtsCI	GGATG	8 cut(s)	406, 460, 579, 871, 1318, 1399, 2051, 2070
BtsI	GCAGTG	1 cut(s)	801
BtsIMutI	CAGTG	9 cut(s)	47, 288, 352, 675, 801, 860, 2118, 2239, 2336
BveI	ACCTGC	1 cut(s)	1847
Cac8I	GCNNGC	4 cut(s)	953, 1191, 1543, 2020
CaiI	CAGNNNCTG	1 cut(s)	1862
CciI	TCATGA	2 cut(s)	1728, 1827
CfoI	GCGC	1 cut(s)	2033
Cfr10I	RCCGGY	1 cut(s)	1961
Cfr13I	GGNCC	4 cut(s)	361, 813, 1192, 2221
CseI	GACGC	2 cut(s)	193, 503
Csp6I	GTAC	3 cut(s)	596, 739, 1345
CviQI	GTAC	3 cut(s)	596, 739, 1345
DinI	GGCGCC	1 cut(s)	2032
DpnI	GATC	4 cut(s)	1430, 1733, 1891, 1968
DpnII	GATC	4 cut(s)	1428, 1731, 1889, 1966
DriI	GACNNNNNGTC	2 cut(s)	499, 1669
Eam1104I	CTCTTC	2 cut(s)	755, 2292
Eam1105I	GACNNNNNGTC	2 cut(s)	499, 1669
EarI	CTCTTC	2 cut(s)	755, 2292
Ecl136II	GAGCTC	1 cut(s)	343
Eco130I	CCWWGG	3 cut(s)	364, 1115, 1195
Eco24I	GRGCYC	2 cut(s)	345, 1917
Eco31I	GGTCTC	3 cut(s)	87, 89, 407
Eco32I	GATATC	1 cut(s)	1987
Eco47I	GGWCC	3 cut(s)	361, 813, 2221
Eco53kI	GAGCTC	1 cut(s)	343
Eco57I	CTGAAG	2 cut(s)	1652, 2175
Eco88I	CYCGRG	1 cut(s)	1432
Eco91I	GGTNACC	1 cut(s)	1661
EcoICRI	GAGCTC	1 cut(s)	343
EcoNI	CCTNNNNNAGG	1 cut(s)	22
EcoO109I	RGGNCCY	1 cut(s)	2221
EcoO65I	GGTNACC	1 cut(s)	1661
EcoRI	GAATTC	1 cut(s)	1420
EcoRII	CCWGG	2 cut(s)	1402, 2224
EcoRV	GATATC	1 cut(s)	1987
EcoT14I	CCWWGG	3 cut(s)	364, 1115, 1195
EcoT22I	ATGCAT	1 cut(s)	486
EcoT38I	GRGCYC	2 cut(s)	345, 1917
EgeI	GGCGCC	1 cut(s)	2032
EheI	GGCGCC	1 cut(s)	2032
ErhI	CCWWGG	3 cut(s)	364, 1115, 1195
Esp3I	CGTCTC	1 cut(s)	486
FaqI	GGGAC	2 cut(s)	1074, 2207
FauNDI	CATATG	1 cut(s)	2024
FblI	GTMKAC	1 cut(s)	1002
Fnu4HI	GCNGC	4 cut(s)	235, 272, 1239, 1767
FokI	GGATG	8 cut(s)	413, 467, 586, 878, 1325, 1386, 2058, 2077
FriOI	GRGCYC	2 cut(s)	345, 1917
Fsp4HI	GCNGC	4 cut(s)	235, 272, 1239, 1767
FspBI	CTAG	2 cut(s)	74, 663
GlaI	GCGC	1 cut(s)	2032
GluI	GCNGC	4 cut(s)	235, 272, 1239, 1767
GsaI	CCCAGC	3 cut(s)	163, 446, 1740
GsuI	CTGGAG	2 cut(s)	912, 2295
HaeII	RGCGCY	1 cut(s)	2034
HaeIII	GGCC	1 cut(s)	1193
HapII	CCGG	3 cut(s)	599, 767, 1962
HgaI	GACGC	2 cut(s)	193, 503
HhaI	GCGC	1 cut(s)	2033
Hin1I	GRCGYC	3 cut(s)	204, 495, 2031
Hin6I	GCGC	1 cut(s)	2031
HinP1I	GCGC	1 cut(s)	2031
HincII	GTYRAC	1 cut(s)	1945
HindII	GTYRAC	1 cut(s)	1945
HindIII	AAGCTT	1 cut(s)	1539
HpaII	CCGG	3 cut(s)	599, 767, 1962
HphI	GGTGA	7 cut(s)	350, 556, 589, 1510, 1574, 1673, 1976
Hpy166II	GTNNAC	4 cut(s)	1003, 1582, 1945, 2308
Hpy188III	TCNNGA	8 cut(s)	412, 767, 891, 1434, 1502, 1729, 1828, 2350
Hpy8I	GTNNAC	4 cut(s)	1003, 1582, 1945, 2308
Hpy99I	CGWCG	1 cut(s)	395
HpyCH4III	ACNGT	2 cut(s)	1499, 2234
HpyCH4IV	ACGT	2 cut(s)	914, 1762
HpyF10VI	GCNNNNNNNGC	4 cut(s)	285, 750, 1238, 2028
HpySE526I	ACGT	2 cut(s)	914, 1762
Hsp92I	GRCGYC	3 cut(s)	204, 495, 2031
HspAI	GCGC	1 cut(s)	2031
KasI	GGCGCC	1 cut(s)	2030
Kpn2I	TCCGGA	1 cut(s)	766
Kzo9I	GATC	4 cut(s)	1428, 1731, 1889, 1966
LmnI	GCTCC	6 cut(s)	439, 659, 898, 1550, 1976, 2270
Lsp1109I	GCAGC	2 cut(s)	258, 1753
LweI	GCATC	8 cut(s)	391, 448, 815, 870, 1176, 1282, 2005, 2091
MaeI	CTAG	2 cut(s)	74, 663
MaeII	ACGT	2 cut(s)	914, 1762
MaeIII	GTNAC	6 cut(s)	607, 910, 1451, 1516, 1661, 1819
MalI	GATC	4 cut(s)	1430, 1733, 1891, 1968
MboI	GATC	4 cut(s)	1428, 1731, 1889, 1966
MboII	GAAGA	4 cut(s)	596, 772, 1880, 2279
MhlI	GDGCHC	3 cut(s)	345, 1234, 1917
MluCI	AATT	9 cut(s)	1053, 1080, 1125, 1335, 1420, 1485, 1550, 2174, 2238
Mly113I	GGCGCC	1 cut(s)	2031
MlyI	GAGTC	6 cut(s)	131, 389, 719, 772, 896, 1107
MmeI	TCCRAC	2 cut(s)	537, 2360
Mph1103I	ATGCAT	1 cut(s)	486
MroI	TCCGGA	1 cut(s)	766
MroXI	GAANNNNTTC	1 cut(s)	2325
MseI	TTAA	8 cut(s)	876, 1086, 1526, 1637, 1992, 2076, 2106, 2192
MslI	CAYNNNNRTG	2 cut(s)	929, 1857
MspI	CCGG	3 cut(s)	599, 767, 1962
MspR9I	CCNGG	2 cut(s)	1404, 2226
Mva1269I	GAATGC	2 cut(s)	910, 924
MvaI	CCWGG	2 cut(s)	1404, 2226
MwoI	GCNNNNNNNGC	4 cut(s)	285, 750, 1238, 2028
NarI	GGCGCC	1 cut(s)	2031
NcoI	CCATGG	1 cut(s)	364
NdeI	CATATG	1 cut(s)	2024
NdeII	GATC	4 cut(s)	1428, 1731, 1889, 1966
NlaIV	GGNNCC	6 cut(s)	142, 230, 900, 1978, 2032, 2223
NmuCI	GTSAC	4 cut(s)	607, 910, 1516, 1661
NsiI	ATGCAT	1 cut(s)	486
NspI	RCATGY	4 cut(s)	488, 1225, 1648, 1938
PagI	TCATGA	2 cut(s)	1728, 1827
PaqCI	CACCTGC	1 cut(s)	1847
PciI	ACATGT	1 cut(s)	1644
PctI	GAATGC	2 cut(s)	910, 924
PdmI	GAANNNNTTC	1 cut(s)	2325
PfeI	GAWTC	7 cut(s)	602, 1211, 1367, 1803, 2052, 2265, 2346
PflMI	CCANNNNNTGG	3 cut(s)	2025, 2065, 2342
PkrI	GCNGC	4 cut(s)	236, 273, 1240, 1768
PleI	GAGTC	6 cut(s)	130, 389, 718, 771, 895, 1106
PluTI	GGCGCC	1 cut(s)	2034
PpsI	GAGTC	6 cut(s)	130, 389, 718, 771, 895, 1106
Ppu21I	YACGTR	1 cut(s)	1763
PpuMI	RGGWCCY	1 cut(s)	2221
PscI	ACATGT	1 cut(s)	1644
PshBI	ATTAAT	1 cut(s)	2192
Psp124BI	GAGCTC	1 cut(s)	345
Psp5II	RGGWCCY	1 cut(s)	2221
Psp6I	CCWGG	2 cut(s)	1402, 2224
PspEI	GGTNACC	1 cut(s)	1661
PspFI	CCCAGC	3 cut(s)	159, 442, 1736
PspGI	CCWGG	2 cut(s)	1402, 2224
PspN4I	GGNNCC	6 cut(s)	142, 230, 900, 1978, 2032, 2223
PspPI	GGNCC	4 cut(s)	361, 813, 1192, 2221
PspPPI	RGGWCCY	1 cut(s)	2221
PstNI	CAGNNNCTG	1 cut(s)	1862
RsaI	GTAC	3 cut(s)	597, 740, 1346
RsaNI	GTAC	3 cut(s)	596, 739, 1345
RseI	CAYNNNNRTG	2 cut(s)	929, 1857
SacI	GAGCTC	1 cut(s)	345
SaqAI	TTAA	8 cut(s)	876, 1086, 1526, 1637, 1992, 2076, 2106, 2192
SatI	GCNGC	4 cut(s)	235, 272, 1239, 1767
Sau3AI	GATC	4 cut(s)	1428, 1731, 1889, 1966
Sau96I	GGNCC	4 cut(s)	361, 813, 1192, 2221
SchI	GAGTC	6 cut(s)	131, 389, 719, 772, 896, 1107
ScrFI	CCNGG	2 cut(s)	1404, 2226
SduI	GDGCHC	3 cut(s)	345, 1234, 1917
SfaNI	GCATC	8 cut(s)	391, 448, 815, 870, 1176, 1282, 2005, 2091
SfcI	CTRYAG	2 cut(s)	999, 1069
SfoI	GGCGCC	1 cut(s)	2032
SinI	GGWCC	3 cut(s)	361, 813, 2221
SmiMI	CAYNNNNRTG	2 cut(s)	929, 1857
SmlI	CTYRAG	2 cut(s)	1502, 1677
SmoI	CTYRAG	2 cut(s)	1502, 1677
Sse9I	AATT	9 cut(s)	1053, 1080, 1125, 1335, 1420, 1485, 1550, 2174, 2238
SsiI	CCGC	5 cut(s)	232, 235, 417, 816, 1239
SspDI	GGCGCC	1 cut(s)	2030
SspI	AATATT	2 cut(s)	1383, 1834
SspMI	CTAG	2 cut(s)	74, 663
SstI	GAGCTC	1 cut(s)	345
StyD4I	CCNGG	2 cut(s)	1402, 2224
StyI	CCWWGG	3 cut(s)	364, 1115, 1195
TaaI	ACNGT	2 cut(s)	1499, 2234
TaiI	ACGT	2 cut(s)	917, 1765
TaqI	TCGA	7 cut(s)	120, 390, 411, 1806, 1957, 2050, 2085
TaqII	GACCGA	2 cut(s)	595, 1497
TasI	AATT	9 cut(s)	1053, 1080, 1125, 1335, 1420, 1485, 1550, 2174, 2238
TatI	WGTACW	2 cut(s)	738, 1344
TauI	GCSGC	2 cut(s)	237, 1241
TfiI	GAWTC	7 cut(s)	602, 1211, 1367, 1803, 2052, 2265, 2346
Tru1I	TTAA	8 cut(s)	876, 1086, 1526, 1637, 1992, 2076, 2106, 2192
Tru9I	TTAA	8 cut(s)	876, 1086, 1526, 1637, 1992, 2076, 2106, 2192
TscAI	CASTG	9 cut(s)	54, 288, 352, 675, 808, 867, 2125, 2239, 2336
TseFI	GTSAC	4 cut(s)	607, 910, 1516, 1661
TseI	GCWGC	2 cut(s)	271, 1766
Tsp45I	GTSAC	4 cut(s)	607, 910, 1516, 1661
TspGWI	ACGGA	1 cut(s)	557
TspRI	CASTG	9 cut(s)	54, 288, 352, 675, 808, 867, 2125, 2239, 2336
Van91I	CCANNNNNTGG	3 cut(s)	2025, 2065, 2342
VpaK11BI	GGWCC	3 cut(s)	361, 813, 2221
VspI	ATTAAT	1 cut(s)	2192
XagI	CCTNNNNNAGG	1 cut(s)	22
XapI	RAATTY	4 cut(s)	1080, 1420, 1485, 2174
XceI	RCATGY	4 cut(s)	488, 1225, 1648, 1938
XmiI	GTMKAC	1 cut(s)	1002
XmnI	GAANNNNTTC	1 cut(s)	2325
XspI	CTAG	2 cut(s)	74, 663
Zsp2I	ATGCAT	1 cut(s)	486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.