Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0002796

Physical Location & Seq

Genomic Coordinates Reverse (-)

23046375 .. 23048624

Gene Structure 2250 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1140400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGCCACCACAACAAACCTACTGCTAACAGACCTCATGTTTGGTGTGAACCAAGTCCCTTCAAACTACATCAGACCCATCTCCGACCGTCCAAATCTCACTGATTTTCAGGTATCAGATGCCTCCTCCATTCCTCTCATTGATCTCAAGGACCTCCATGGCCCAACGCACTCTGATATTATCGAACAGATTGGTCTTGCATGCCAGACTGATGGTTTCTTTCAGGTGAAAAACCATGGAGTTCCAGAGATAATGATCAAAAACATGTTGAATATAGCAAGAGAGTTTTTCCAATTACCAGAGAGCGAGAGGTTGAAGATGTACTCAGATGACCCTTCTAAAACAACTAGGCTCTCCACCAGTTTCAACGTCAGGACTGAAAAACTTTCCAACTGGAGGGACTTCCTTAGGCTCCATTGCTACCCTCTTCAAGACTATGTCCAAGAATGGCCTAACAATCCCCCATTGTTCAGGGAGCAAGTGGGTGAGTACTGCACAAATGTGAGAGGATTGGTGCTGAGATTGCTTGAGGCCATATCAGAGAGTTTGGGCTTGGAAAAGAACTGTATTGTTAAGGCATTGGGGAAGCAAGGGCAGCATATGGCTTTGAATTACTATCCACCTTGTCCACAGCCGGAGTTGACTTATGGATTGCCTGGACATACTGATGCCAACCTAATCACTGTCCTTCTCCAAGATGAAGTGCCTGGATTGCAGGTCCTTAGAAATGGCAAGTGGGTTGCTGTCAACCCTATTCCCAACACTTTCATTGTCAACATTGGTGATATGATGCAGGTAATTATGGCTGTGGTAAACTGTAACTCAGAGAGAATCTCGATCCCAACTTTCTACTGTCCATCACCAGATGCAGTAATTGGGCCTGCCAAGGAGCTCATCAACTATGACCACCCAGCCATGTACAGGAACTTCACATATGCCGAGTACTATGAGAAATTCTGGAATAAAGGACTTGCAACTGAGTGCTGCTTAGACTTGTTTAAACTCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002229 GO:0002239 GO:0006082 GO:0006725 GO:0006950 GO:0006952 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009056 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009696 GO:0009719 GO:0009725 GO:0009751 GO:0009987 GO:0010033 GO:0010150 GO:0010817 GO:0014070 GO:0016054 GO:0016999 GO:0017001 GO:0017144 GO:0018958 GO:0019336 GO:0019439 GO:0019752 GO:0032501 GO:0032502 GO:0032787 GO:0042221 GO:0042445 GO:0042447 GO:0042493 GO:0042537 GO:0042737 GO:0043207 GO:0043436 GO:0044237 GO:0044248 GO:0044281 GO:0044282 GO:0046244 GO:0046395 GO:0046677 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0065008 GO:0071704 GO:0072329 GO:0090693 GO:0098542 GO:0099402 GO:1901360 GO:1901361 GO:1901575 GO:1901615 GO:1901616 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

337

Amino Acids

38.2

Weight (kDa)

5.31

Isoelectric Point (pI)

41.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	44 - 152	6.3e-27	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	199 - 286	6.2e-27	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10490 AT4G10500
fragaria_vesca	FvH4_5g10430 FvH4_7g17840
malus_domestica	MD01G1090000.v1.1 MD06G1124100.v1.1 MD14G1140400.v1.1 MD14G1140700.v1.1 MD14G1141000.v1.1 MD14G1141200.v1.1
prunus_persica	Prupe.2G199700_v2.0.a1 Prupe.2G200200_v2.0.a1 Prupe.2G200200_v2.0.a1 Prupe.2G200200_v2.0.a1 Prupe.5G134500_v2.0.a1 Prupe.5G134700_v2.0.a1
pyrus_communis	pycom01g11450 pycom06g11450 pycom14g11590
rosa_chinensis	RchiOBHm_Chr1g0361261 RchiOBHm_Chr7g0187801
rosa_laevigata	RLG00000004755 RLG00000027730
rosa_multiflora	Rmu_sc0002119.1_g000038 Rmu_sc0004483.1_g000038
rosa_roxburghii	Rroxscaffold_3G00267060 Rroxscaffold_4G00295120
rosa_rugosa	Rorug01G0287700 Rorug01G0287700 Rorug02G0186700 Rorug06G0484300
rosa_samantha	Rh1AG299000 Rh1BG262900 Rh1CG280300 Rh1DG292900 Rh7CG090300 Rh7DG091900
rosa_wichuraiana	Rw1G026450 Rw7G007720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	706, 784
AclWI	GGATC	1 cut(s)	832
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	953
AfaI	GTAC	4 cut(s)	323, 491, 920, 944
AfiI	CCNNNNNNNGG	2 cut(s)	396, 921
AflIII	ACRYGT	1 cut(s)	264
AgsI	TTSAA	6 cut(s)	63, 271, 316, 367, 431, 610
AjnI	CCWGG	2 cut(s)	655, 706
AleI	CACNNNNGTG	1 cut(s)	500
AluBI	AGCT	1 cut(s)	892
AluI	AGCT	1 cut(s)	892
Alw21I	GWGCWC	1 cut(s)	894
AlwI	GGATC	1 cut(s)	832
AoxI	GGCC	5 cut(s)	3, 160, 449, 531, 878
ApeKI	GCWGC	2 cut(s)	595, 984
ApoI	RAATTY	1 cut(s)	953
ArsI	GACNNNNNNTTYG	2 cut(s)	23, 55
AspS9I	GGNCC	4 cut(s)	151, 161, 718, 878
AsuHPI	GGTGA	4 cut(s)	238, 497, 794, 852
AvaII	GGWCC	2 cut(s)	151, 718
AxyI	CCTNAGG	1 cut(s)	407
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	894
BarI	GAAGNNNNNNTAC	2 cut(s)	911, 943
Bbv12I	GWGCWC	1 cut(s)	894
BbvI	GCAGC	2 cut(s)	607, 971
BccI	CCATC	3 cut(s)	86, 206, 865
BciT130I	CCWGG	2 cut(s)	657, 708
BclI	TGATCA	1 cut(s)	255
BfaI	CTAG	1 cut(s)	348
BfuAI	ACCTGC	2 cut(s)	706, 784
BisI	GCNGC	2 cut(s)	596, 985
BlsI	GCNGC	2 cut(s)	597, 986
BmcAI	AGTACT	2 cut(s)	491, 944
Bme1390I	CCNGG	2 cut(s)	657, 708
Bme18I	GGWCC	2 cut(s)	151, 718
BmgT120I	GGNCC	4 cut(s)	151, 161, 718, 878
BmiI	GGNNCC	1 cut(s)	413
BmrFI	CCNGG	2 cut(s)	657, 708
BmsI	GCATC	4 cut(s)	109, 658, 780, 856
BplI	GAGNNNNNCTC	2 cut(s)	818, 850
BpmI	CTGGAG	1 cut(s)	415
BpuEI	CTTGAG	2 cut(s)	131, 548
BsaBI	GATNNNNATC	1 cut(s)	254
BsaJI	CCNNGG	3 cut(s)	157, 235, 885
Bsc4I	CCNNNNNNNGG	2 cut(s)	396, 921
Bse1I	ACTGG	2 cut(s)	360, 398
Bse21I	CCTNAGG	1 cut(s)	407
Bse3DI	GCAATG	1 cut(s)	415
Bse8I	GATNNNNATC	1 cut(s)	254
BseBI	CCWGG	2 cut(s)	657, 708
BseDI	CCNNGG	3 cut(s)	157, 235, 885
BseJI	GATNNNNATC	1 cut(s)	254
BseLI	CCNNNNNNNGG	2 cut(s)	396, 921
BseMI	GCAATG	1 cut(s)	415
BseMII	CTCAG	4 cut(s)	339, 509, 837, 969
BseNI	ACTGG	2 cut(s)	360, 398
BseRI	GAGGAG	1 cut(s)	115
BseXI	GCAGC	2 cut(s)	607, 971
BseYI	CCCAGC	1 cut(s)	910
BsgI	GTGCAG	1 cut(s)	478
Bsh1285I	CGRYCG	1 cut(s)	88
BshFI	GGCC	5 cut(s)	5, 162, 451, 533, 880
BsiEI	CGRYCG	1 cut(s)	88
BsiHKAI	GWGCWC	1 cut(s)	894
BsiSI	CCGG	1 cut(s)	635
BslFI	GGGAC	2 cut(s)	41, 413
BslI	CCNNNNNNNGG	2 cut(s)	396, 921
BsmFI	GGGAC	2 cut(s)	41, 413
BsnI	GGCC	5 cut(s)	5, 162, 451, 533, 880
Bsp1286I	GDGCHC	1 cut(s)	894
Bsp1407I	TGTACA	1 cut(s)	918
Bsp143I	GATC	3 cut(s)	142, 255, 837
Bsp19I	CCATGG	2 cut(s)	157, 235
BspANI	GGCC	5 cut(s)	5, 162, 451, 533, 880
BspCNI	CTCAG	4 cut(s)	338, 510, 836, 970
BspLI	GGNNCC	1 cut(s)	413
BspMI	ACCTGC	2 cut(s)	706, 784
BspPI	GGATC	1 cut(s)	832
BsrDI	GCAATG	1 cut(s)	415
BsrGI	TGTACA	1 cut(s)	918
BsrI	ACTGG	2 cut(s)	360, 398
BssECI	CCNNGG	3 cut(s)	157, 235, 885
BssMI	GATC	3 cut(s)	142, 255, 837
BssT1I	CCWWGG	3 cut(s)	157, 235, 885
Bst2UI	CCWGG	2 cut(s)	657, 708
Bst4CI	ACNGT	5 cut(s)	89, 566, 685, 818, 854
Bst6I	CTCTTC	1 cut(s)	432
BstAUI	TGTACA	1 cut(s)	918
BstC8I	GCNNGC	2 cut(s)	202, 882
BstDEI	CTNAG	7 cut(s)	325, 407, 518, 722, 823, 978, 988
BstDSI	CCRYGG	2 cut(s)	157, 235
BstKTI	GATC	3 cut(s)	145, 258, 840
BstMBI	GATC	3 cut(s)	142, 255, 837
BstMCI	CGRYCG	1 cut(s)	88
BstMWI	GCNNNNNNNGC	3 cut(s)	523, 595, 712
BstNI	CCWGG	2 cut(s)	657, 708
BstNSI	RCATGY	2 cut(s)	204, 268
BstSCI	CCNGG	2 cut(s)	655, 706
BstV1I	GCAGC	2 cut(s)	607, 971
BstXI	CCANNNNNNTGG	1 cut(s)	212
Bsu36I	CCTNAGG	1 cut(s)	407
BsuRI	GGCC	5 cut(s)	5, 162, 451, 533, 880
BtgI	CCRYGG	2 cut(s)	157, 235
BtsIMutI	CAGTG	2 cut(s)	99, 681
BveI	ACCTGC	2 cut(s)	706, 784
Cac8I	GCNNGC	2 cut(s)	202, 882
Cfr13I	GGNCC	4 cut(s)	151, 161, 718, 878
Csp6I	GTAC	4 cut(s)	322, 490, 919, 943
CviAII	CATG	6 cut(s)	37, 158, 201, 236, 265, 916
CviQI	GTAC	4 cut(s)	322, 490, 919, 943
DdeI	CTNAG	7 cut(s)	325, 407, 518, 722, 823, 978, 988
DpnI	GATC	3 cut(s)	144, 257, 839
DpnII	GATC	3 cut(s)	142, 255, 837
DraI	TTTAAA	1 cut(s)	1000
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	432
EarI	CTCTTC	1 cut(s)	432
Ecl136II	GAGCTC	1 cut(s)	892
Eco130I	CCWWGG	3 cut(s)	157, 235, 885
Eco24I	GRGCYC	1 cut(s)	894
Eco47I	GGWCC	2 cut(s)	151, 718
Eco53kI	GAGCTC	1 cut(s)	892
Eco81I	CCTNAGG	1 cut(s)	407
EcoICRI	GAGCTC	1 cut(s)	892
EcoO109I	RGGNCCY	2 cut(s)	151, 718
EcoRII	CCWGG	2 cut(s)	655, 706
EcoT14I	CCWWGG	3 cut(s)	157, 235, 885
EcoT38I	GRGCYC	1 cut(s)	894
ErhI	CCWWGG	3 cut(s)	157, 235, 885
FaeI	CATG	6 cut(s)	40, 161, 204, 239, 268, 919
FaqI	GGGAC	2 cut(s)	41, 413
FatI	CATG	6 cut(s)	36, 157, 200, 235, 264, 915
FauNDI	CATATG	2 cut(s)	600, 934
FbaI	TGATCA	1 cut(s)	255
Fnu4HI	GCNGC	2 cut(s)	596, 985
FriOI	GRGCYC	1 cut(s)	894
Fsp4HI	GCNGC	2 cut(s)	596, 985
FspBI	CTAG	1 cut(s)	348
GluI	GCNGC	2 cut(s)	596, 985
GsaI	CCCAGC	1 cut(s)	914
GsuI	CTGGAG	1 cut(s)	415
HaeIII	GGCC	5 cut(s)	5, 162, 451, 533, 880
HapII	CCGG	1 cut(s)	635
Hin1II	CATG	6 cut(s)	40, 161, 204, 239, 268, 919
HincII	GTYRAC	3 cut(s)	642, 748, 775
HindII	GTYRAC	3 cut(s)	642, 748, 775
HinfI	GANTC	1 cut(s)	831
HpaII	CCGG	1 cut(s)	635
HphI	GGTGA	4 cut(s)	238, 497, 794, 852
Hpy166II	GTNNAC	6 cut(s)	49, 629, 642, 748, 775, 814
Hpy188I	TCNGA	7 cut(s)	74, 85, 118, 175, 328, 541, 826
Hpy188III	TCNNGA	5 cut(s)	245, 373, 431, 835, 958
Hpy8I	GTNNAC	6 cut(s)	49, 629, 642, 748, 775, 814
HpyAV	CCTTC	3 cut(s)	69, 345, 698
HpyCH4III	ACNGT	5 cut(s)	89, 566, 685, 818, 854
HpyCH4IV	ACGT	1 cut(s)	369
HpyCH4V	TGCA	6 cut(s)	200, 495, 715, 793, 869, 974
HpyF10VI	GCNNNNNNNGC	3 cut(s)	523, 595, 712
HpyF3I	CTNAG	7 cut(s)	325, 407, 518, 722, 823, 978, 988
HpySE526I	ACGT	1 cut(s)	369
Hsp92II	CATG	6 cut(s)	40, 161, 204, 239, 268, 919
Ksp22I	TGATCA	1 cut(s)	255
Kzo9I	GATC	3 cut(s)	142, 255, 837
LmnI	GCTCC	3 cut(s)	417, 475, 889
Lsp1109I	GCAGC	2 cut(s)	607, 971
LweI	GCATC	4 cut(s)	109, 658, 780, 856
MaeI	CTAG	1 cut(s)	348
MaeII	ACGT	1 cut(s)	369
MaeIII	GTNAC	1 cut(s)	818
MalI	GATC	3 cut(s)	144, 257, 839
MboI	GATC	3 cut(s)	142, 255, 837
MboII	GAAGA	2 cut(s)	328, 419
MhlI	GDGCHC	1 cut(s)	894
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	5 cut(s)	293, 610, 798, 873, 953
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	2 cut(s)	108, 414
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	573, 999
MslI	CAYNNNNRTG	2 cut(s)	500, 666
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	635
MspR9I	CCNGG	2 cut(s)	657, 708
MssI	GTTTAAAC	1 cut(s)	1000
MvaI	CCWGG	2 cut(s)	657, 708
MwoI	GCNNNNNNNGC	3 cut(s)	523, 595, 712
NcoI	CCATGG	2 cut(s)	157, 235
NdeI	CATATG	2 cut(s)	600, 934
NdeII	GATC	3 cut(s)	142, 255, 837
NlaIII	CATG	6 cut(s)	40, 161, 204, 239, 268, 919
NlaIV	GGNNCC	1 cut(s)	413
NmeAIII	GCCGAG	1 cut(s)	964
NspI	RCATGY	2 cut(s)	204, 268
OliI	CACNNNNGTG	1 cut(s)	500
PaeI	GCATGC	1 cut(s)	204
PciI	ACATGT	1 cut(s)	264
PfeI	GAWTC	1 cut(s)	831
PflFI	GACNNNGTC	1 cut(s)	437
PkrI	GCNGC	2 cut(s)	597, 986
PmeI	GTTTAAAC	1 cut(s)	1000
PpuMI	RGGWCCY	2 cut(s)	151, 718
PscI	ACATGT	1 cut(s)	264
Psp124BI	GAGCTC	1 cut(s)	894
Psp5II	RGGWCCY	2 cut(s)	151, 718
Psp6I	CCWGG	2 cut(s)	655, 706
PspFI	CCCAGC	1 cut(s)	910
PspGI	CCWGG	2 cut(s)	655, 706
PspN4I	GGNNCC	1 cut(s)	413
PspPI	GGNCC	4 cut(s)	151, 161, 718, 878
PspPPI	RGGWCCY	2 cut(s)	151, 718
PsyI	GACNNNGTC	1 cut(s)	437
RsaI	GTAC	4 cut(s)	323, 491, 920, 944
RsaNI	GTAC	4 cut(s)	322, 490, 919, 943
RseI	CAYNNNNRTG	2 cut(s)	500, 666
SacI	GAGCTC	1 cut(s)	894
SaqAI	TTAA	2 cut(s)	573, 999
SatI	GCNGC	2 cut(s)	596, 985
Sau3AI	GATC	3 cut(s)	142, 255, 837
Sau96I	GGNCC	4 cut(s)	151, 161, 718, 878
ScaI	AGTACT	2 cut(s)	491, 944
ScrFI	CCNGG	2 cut(s)	657, 708
SduI	GDGCHC	1 cut(s)	894
SfaNI	GCATC	4 cut(s)	109, 658, 780, 856
SinI	GGWCC	2 cut(s)	151, 718
SmiMI	CAYNNNNRTG	2 cut(s)	500, 666
SmlI	CTYRAG	2 cut(s)	146, 527
SmoI	CTYRAG	2 cut(s)	146, 527
SphI	GCATGC	1 cut(s)	204
Sse9I	AATT	5 cut(s)	293, 610, 798, 873, 953
SspMI	CTAG	1 cut(s)	348
SstI	GAGCTC	1 cut(s)	894
StyD4I	CCNGG	2 cut(s)	655, 706
StyI	CCWWGG	3 cut(s)	157, 235, 885
TaaI	ACNGT	5 cut(s)	89, 566, 685, 818, 854
TaiI	ACGT	1 cut(s)	372
TaqI	TCGA	2 cut(s)	183, 836
TasI	AATT	5 cut(s)	293, 610, 798, 873, 953
TatI	WGTACW	4 cut(s)	321, 489, 918, 942
TfiI	GAWTC	1 cut(s)	831
Tru1I	TTAA	2 cut(s)	573, 999
Tru9I	TTAA	2 cut(s)	573, 999
TscAI	CASTG	2 cut(s)	106, 688
TseI	GCWGC	2 cut(s)	595, 984
TspDTI	ATGAA	2 cut(s)	714, 757
TspRI	CASTG	2 cut(s)	106, 688
Tth111I	GACNNNGTC	1 cut(s)	437
VpaK11BI	GGWCC	2 cut(s)	151, 718
XapI	RAATTY	1 cut(s)	953
XceI	RCATGY	2 cut(s)	204, 268
XspI	CTAG	1 cut(s)	348
ZrmI	AGTACT	2 cut(s)	491, 944

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.