Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0002796

Physical Location & Seq

Genomic Coordinates Reverse (-)

23076532 .. 23078633

Gene Structure 2102 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1140700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGGCCCCCACAACAAACCTACTGCTAACAGACCTCATGTCTGGTGTGAACCATATCCCTTCAAACTACATCCGACCCATCTCCGACCGTCCAAATCTCACTGCTTTTCAGGTATCAGATGCCTCCTCCATTCCTCTCATTGATCTCAAGGACCTCCATGGCCCAACGAACTCTGATATTATCAAACAGATTGGTCTAGCATGCCAGACTGATGGTTTCTTTCAGGTAACAATTAAAACACGCACGTATGTATATACTAGGGCAAATGATTTCAACACAGCCCTTTACTCCATCTGCATACCCTCAAGAGAGTTTTTCCAATTATCAGAGAGCGAGAGGTTGAAGATGTACTCAGATGACCCTTCTAAGACAACCAGACTCTCCACCAGTTTCAACGTCAGGACTGAAAAACTATCCAACTGGAGGGACTTCCTTAGGCTCCATTGCTACCCTCTTCAAGACCATGTCCAAGAATGGCCTAACAATCCCCCATTGTTCAGGGAGCAAGTGGGTGAGTACTGCACAAATGTGAGAGGATTGGTGCTGAGATTGCTTGAGGCCATATCAGAGAGTTTGGGCTTGGAAAAGAACTGTATTGTTAAGGCACTGGGGAGGCAAGGGCAGCATATGGCTTTGAATTACTATCCACCTTGTCCTCAGCCAGAGCTAACTTATGGATTGCCTGGACATACTGATGCCAACCTAATCACTGTCCTTCTCCAAGATGAACTGCCTGGATTGCAGGTCCTTAGAAATGGCAAGTGGGTTGCTGTCAACCCTATTCCCAACACTTTCATTGTCAATATTGGTGATATGATGCAGGTAATTAGCAACAATCGGTACAAGAGTGTACTCCATAGAGCTGTGATAAACTGTAACTCGGAGAGAATATCGATCCCAACTTTCTATTGTCCATCACCAGATGCAGTAATTGGGCCTGCCAAGGAGCTCGTCAACTATGACCACCCAGCCATGTACAGGAACTTCACATATGCCGAGTACTATGAGAAATTCTGGAATAAAGGACTTGCAACTGAATGCTGCTTAGACTTGTTTAAACCCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002229 GO:0002239 GO:0006082 GO:0006725 GO:0006950 GO:0006952 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009056 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009696 GO:0009719 GO:0009725 GO:0009751 GO:0009987 GO:0010033 GO:0010150 GO:0010817 GO:0014070 GO:0016054 GO:0016999 GO:0017001 GO:0017144 GO:0018958 GO:0019336 GO:0019439 GO:0019752 GO:0032501 GO:0032502 GO:0032787 GO:0042221 GO:0042445 GO:0042447 GO:0042493 GO:0042537 GO:0042737 GO:0043207 GO:0043436 GO:0044237 GO:0044248 GO:0044281 GO:0044282 GO:0046244 GO:0046395 GO:0046677 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0065008 GO:0071704 GO:0072329 GO:0090693 GO:0098542 GO:0099402 GO:1901360 GO:1901361 GO:1901575 GO:1901615 GO:1901616 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

356

Amino Acids

40.41

Weight (kDa)

6.45

Isoelectric Point (pI)

37.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	44 - 161	5.1e-14	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	208 - 305	1.5e-37	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10490 AT4G10500
fragaria_vesca	FvH4_5g10430 FvH4_7g17840
malus_domestica	MD01G1090000.v1.1 MD06G1124100.v1.1 MD14G1140400.v1.1 MD14G1140700.v1.1 MD14G1141000.v1.1 MD14G1141200.v1.1
prunus_persica	Prupe.2G199700_v2.0.a1 Prupe.2G200200_v2.0.a1 Prupe.2G200200_v2.0.a1 Prupe.2G200200_v2.0.a1 Prupe.5G134500_v2.0.a1 Prupe.5G134700_v2.0.a1
pyrus_communis	pycom01g11450 pycom06g11450 pycom14g11590
rosa_chinensis	RchiOBHm_Chr1g0361261 RchiOBHm_Chr7g0187801
rosa_laevigata	RLG00000004755 RLG00000027730
rosa_multiflora	Rmu_sc0002119.1_g000038 Rmu_sc0004483.1_g000038
rosa_roxburghii	Rroxscaffold_3G00267060 Rroxscaffold_4G00295120
rosa_rugosa	Rorug01G0287700 Rorug01G0287700 Rorug02G0186700 Rorug06G0484300
rosa_samantha	Rh1AG299000 Rh1BG262900 Rh1CG280300 Rh1DG292900 Rh7CG090300 Rh7DG091900
rosa_wichuraiana	Rw1G026450 Rw7G007720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	733, 811
AclWI	GGATC	1 cut(s)	889
AcsI	RAATTY	1 cut(s)	1010
AfaI	GTAC	6 cut(s)	350, 518, 842, 852, 977, 1001
AfiI	CCNNNNNNNGG	2 cut(s)	423, 978
AgsI	TTSAA	6 cut(s)	63, 274, 343, 394, 458, 637
AhdI	GACNNNNNGTC	1 cut(s)	37
AjnI	CCWGG	2 cut(s)	682, 733
AleI	CACNNNNGTG	1 cut(s)	527
AluBI	AGCT	3 cut(s)	667, 863, 949
AluI	AGCT	3 cut(s)	667, 863, 949
Alw21I	GWGCWC	1 cut(s)	951
AlwI	GGATC	1 cut(s)	889
AoxI	GGCC	5 cut(s)	3, 160, 476, 558, 935
ApeKI	GCWGC	2 cut(s)	622, 1041
ApoI	RAATTY	1 cut(s)	1010
AspS9I	GGNCC	5 cut(s)	4, 151, 161, 745, 935
AsuHPI	GGTGA	3 cut(s)	524, 821, 909
AvaII	GGWCC	2 cut(s)	151, 745
AxyI	CCTNAGG	1 cut(s)	434
BaeI	ACNNNNGTAYC	2 cut(s)	832, 865
BanII	GRGCYC	1 cut(s)	951
BarI	GAAGNNNNNNTAC	2 cut(s)	968, 1000
Bbv12I	GWGCWC	1 cut(s)	951
BbvCI	CCTCAGC	1 cut(s)	657
BbvI	GCAGC	2 cut(s)	634, 1028
BccI	CCATC	4 cut(s)	86, 206, 299, 922
BciT130I	CCWGG	2 cut(s)	684, 735
BfaI	CTAG	2 cut(s)	197, 258
BfuAI	ACCTGC	2 cut(s)	733, 811
BisI	GCNGC	2 cut(s)	623, 1042
BlsI	GCNGC	2 cut(s)	624, 1043
BmcAI	AGTACT	2 cut(s)	518, 1001
Bme1390I	CCNGG	2 cut(s)	684, 735
Bme18I	GGWCC	2 cut(s)	151, 745
BmeRI	GACNNNNNGTC	1 cut(s)	37
BmgT120I	GGNCC	5 cut(s)	4, 151, 161, 745, 935
BmiI	GGNNCC	2 cut(s)	6, 440
BmrFI	CCNGG	2 cut(s)	684, 735
BmrI	ACTGGG	1 cut(s)	617
BmsI	GCATC	4 cut(s)	109, 685, 807, 913
BmuI	ACTGGG	1 cut(s)	617
BpmI	CTGGAG	1 cut(s)	442
Bpu10I	CCTNAGC	1 cut(s)	657
BpuEI	CTTGAG	3 cut(s)	131, 289, 575
Bsa29I	ATCGAT	1 cut(s)	893
BsaAI	YACGTR	1 cut(s)	246
BsaJI	CCNNGG	2 cut(s)	157, 942
Bsc4I	CCNNNNNNNGG	2 cut(s)	423, 978
Bse1I	ACTGG	3 cut(s)	387, 425, 612
Bse21I	CCTNAGG	1 cut(s)	434
Bse3DI	GCAATG	1 cut(s)	442
BseBI	CCWGG	2 cut(s)	684, 735
BseCI	ATCGAT	1 cut(s)	893
BseDI	CCNNGG	2 cut(s)	157, 942
BseGI	GGATG	1 cut(s)	69
BseLI	CCNNNNNNNGG	2 cut(s)	423, 978
BseMI	GCAATG	1 cut(s)	442
BseMII	CTCAG	3 cut(s)	366, 536, 671
BseNI	ACTGG	3 cut(s)	387, 425, 612
BseRI	GAGGAG	1 cut(s)	115
BseXI	GCAGC	2 cut(s)	634, 1028
BseYI	CCCAGC	1 cut(s)	967
BsgI	GTGCAG	1 cut(s)	505
Bsh1285I	CGRYCG	1 cut(s)	88
BshFI	GGCC	5 cut(s)	5, 162, 478, 560, 937
BshVI	ATCGAT	1 cut(s)	893
BsiEI	CGRYCG	1 cut(s)	88
BsiHKAI	GWGCWC	1 cut(s)	951
BslFI	GGGAC	1 cut(s)	440
BslI	CCNNNNNNNGG	2 cut(s)	423, 978
BsmFI	GGGAC	1 cut(s)	440
BsmI	GAATGC	1 cut(s)	1043
BsnI	GGCC	5 cut(s)	5, 162, 478, 560, 937
Bsp1286I	GDGCHC	1 cut(s)	951
Bsp1407I	TGTACA	1 cut(s)	975
Bsp143I	GATC	2 cut(s)	142, 894
Bsp19I	CCATGG	1 cut(s)	157
BspANI	GGCC	5 cut(s)	5, 162, 478, 560, 937
BspCNI	CTCAG	3 cut(s)	365, 537, 670
BspDI	ATCGAT	1 cut(s)	893
BspLI	GGNNCC	2 cut(s)	6, 440
BspMI	ACCTGC	2 cut(s)	733, 811
BspPI	GGATC	1 cut(s)	889
BsrDI	GCAATG	1 cut(s)	442
BsrGI	TGTACA	1 cut(s)	975
BsrI	ACTGG	3 cut(s)	387, 425, 612
BssECI	CCNNGG	2 cut(s)	157, 942
BssMI	GATC	2 cut(s)	142, 894
BssT1I	CCWWGG	2 cut(s)	157, 942
Bst2UI	CCWGG	2 cut(s)	684, 735
Bst4CI	ACNGT	4 cut(s)	89, 593, 712, 875
Bst6I	CTCTTC	1 cut(s)	459
BstAUI	TGTACA	1 cut(s)	975
BstBAI	YACGTR	1 cut(s)	246
BstC8I	GCNNGC	2 cut(s)	202, 939
BstDEI	CTNAG	7 cut(s)	352, 366, 434, 545, 657, 749, 1045
BstDSI	CCRYGG	1 cut(s)	157
BstF5I	GGATG	1 cut(s)	69
BstKTI	GATC	2 cut(s)	145, 897
BstMBI	GATC	2 cut(s)	142, 894
BstMCI	CGRYCG	1 cut(s)	88
BstMWI	GCNNNNNNNGC	3 cut(s)	550, 622, 739
BstNI	CCWGG	2 cut(s)	684, 735
BstNSI	RCATGY	1 cut(s)	204
BstSCI	CCNGG	2 cut(s)	682, 733
BstV1I	GCAGC	2 cut(s)	634, 1028
BstXI	CCANNNNNNTGG	1 cut(s)	212
Bsu15I	ATCGAT	1 cut(s)	893
Bsu36I	CCTNAGG	1 cut(s)	434
BsuRI	GGCC	5 cut(s)	5, 162, 478, 560, 937
BsuTUI	ATCGAT	1 cut(s)	893
BtgI	CCRYGG	1 cut(s)	157
BtsCI	GGATG	1 cut(s)	69
BtsI	GCAGTG	1 cut(s)	99
BtsIMutI	CAGTG	3 cut(s)	99, 605, 708
BveI	ACCTGC	2 cut(s)	733, 811
Cac8I	GCNNGC	2 cut(s)	202, 939
Cfr13I	GGNCC	5 cut(s)	4, 151, 161, 745, 935
ClaI	ATCGAT	1 cut(s)	893
Csp6I	GTAC	6 cut(s)	349, 517, 841, 851, 976, 1000
CviAII	CATG	5 cut(s)	37, 158, 201, 464, 973
CviQI	GTAC	6 cut(s)	349, 517, 841, 851, 976, 1000
DdeI	CTNAG	7 cut(s)	352, 366, 434, 545, 657, 749, 1045
DpnI	GATC	2 cut(s)	144, 896
DpnII	GATC	2 cut(s)	142, 894
DraI	TTTAAA	1 cut(s)	1057
DriI	GACNNNNNGTC	1 cut(s)	37
Eam1104I	CTCTTC	1 cut(s)	459
Eam1105I	GACNNNNNGTC	1 cut(s)	37
EarI	CTCTTC	1 cut(s)	459
Ecl136II	GAGCTC	1 cut(s)	949
Eco130I	CCWWGG	2 cut(s)	157, 942
Eco24I	GRGCYC	1 cut(s)	951
Eco47I	GGWCC	2 cut(s)	151, 745
Eco53kI	GAGCTC	1 cut(s)	949
Eco81I	CCTNAGG	1 cut(s)	434
EcoICRI	GAGCTC	1 cut(s)	949
EcoO109I	RGGNCCY	2 cut(s)	151, 745
EcoRII	CCWGG	2 cut(s)	682, 733
EcoT14I	CCWWGG	2 cut(s)	157, 942
EcoT38I	GRGCYC	1 cut(s)	951
ErhI	CCWWGG	2 cut(s)	157, 942
FaeI	CATG	5 cut(s)	40, 161, 204, 467, 976
FaqI	GGGAC	1 cut(s)	440
FatI	CATG	5 cut(s)	36, 157, 200, 463, 972
FauNDI	CATATG	2 cut(s)	627, 991
Fnu4HI	GCNGC	2 cut(s)	623, 1042
FokI	GGATG	1 cut(s)	56
FriOI	GRGCYC	1 cut(s)	951
Fsp4HI	GCNGC	2 cut(s)	623, 1042
FspBI	CTAG	2 cut(s)	197, 258
GluI	GCNGC	2 cut(s)	623, 1042
GsaI	CCCAGC	1 cut(s)	971
GsuI	CTGGAG	1 cut(s)	442
HaeIII	GGCC	5 cut(s)	5, 162, 478, 560, 937
Hin1II	CATG	5 cut(s)	40, 161, 204, 467, 976
HincII	GTYRAC	2 cut(s)	775, 955
HindII	GTYRAC	2 cut(s)	775, 955
HinfI	GANTC	1 cut(s)	378
HphI	GGTGA	3 cut(s)	524, 821, 909
Hpy166II	GTNNAC	4 cut(s)	49, 775, 851, 955
Hpy188I	TCNGA	8 cut(s)	74, 85, 118, 175, 328, 355, 568, 883
Hpy188III	TCNNGA	4 cut(s)	306, 400, 458, 1015
Hpy8I	GTNNAC	4 cut(s)	49, 775, 851, 955
HpyAV	CCTTC	3 cut(s)	69, 372, 725
HpyCH4III	ACNGT	4 cut(s)	89, 593, 712, 875
HpyCH4IV	ACGT	2 cut(s)	245, 396
HpyCH4V	TGCA	6 cut(s)	297, 522, 742, 820, 926, 1031
HpyF10VI	GCNNNNNNNGC	3 cut(s)	550, 622, 739
HpyF3I	CTNAG	7 cut(s)	352, 366, 434, 545, 657, 749, 1045
HpySE526I	ACGT	2 cut(s)	245, 396
Hsp92II	CATG	5 cut(s)	40, 161, 204, 467, 976
Kzo9I	GATC	2 cut(s)	142, 894
LmnI	GCTCC	3 cut(s)	444, 502, 946
Lsp1109I	GCAGC	2 cut(s)	634, 1028
LweI	GCATC	4 cut(s)	109, 685, 807, 913
MaeI	CTAG	2 cut(s)	197, 258
MaeII	ACGT	2 cut(s)	245, 396
MaeIII	GTNAC	2 cut(s)	226, 875
MalI	GATC	2 cut(s)	144, 896
MboI	GATC	2 cut(s)	142, 894
MboII	GAAGA	2 cut(s)	355, 446
MhlI	GDGCHC	1 cut(s)	951
MluCI	AATT	6 cut(s)	231, 320, 637, 825, 930, 1010
MlyI	GAGTC	1 cut(s)	372
MmeI	TCCRAC	3 cut(s)	97, 108, 441
MseI	TTAA	3 cut(s)	234, 600, 1056
MslI	CAYNNNNRTG	2 cut(s)	527, 693
MspR9I	CCNGG	2 cut(s)	684, 735
MssI	GTTTAAAC	1 cut(s)	1057
Mva1269I	GAATGC	1 cut(s)	1043
MvaI	CCWGG	2 cut(s)	684, 735
MwoI	GCNNNNNNNGC	3 cut(s)	550, 622, 739
NcoI	CCATGG	1 cut(s)	157
NdeI	CATATG	2 cut(s)	627, 991
NdeII	GATC	2 cut(s)	142, 894
NlaIII	CATG	5 cut(s)	40, 161, 204, 467, 976
NlaIV	GGNNCC	2 cut(s)	6, 440
NmeAIII	GCCGAG	1 cut(s)	1021
NspI	RCATGY	1 cut(s)	204
OliI	CACNNNNGTG	1 cut(s)	527
PaeI	GCATGC	1 cut(s)	204
PctI	GAATGC	1 cut(s)	1043
PflFI	GACNNNGTC	1 cut(s)	464
PkrI	GCNGC	2 cut(s)	624, 1043
PleI	GAGTC	1 cut(s)	372
PmeI	GTTTAAAC	1 cut(s)	1057
PpsI	GAGTC	1 cut(s)	372
Ppu21I	YACGTR	1 cut(s)	246
PpuMI	RGGWCCY	2 cut(s)	151, 745
Psp124BI	GAGCTC	1 cut(s)	951
Psp5II	RGGWCCY	2 cut(s)	151, 745
Psp6I	CCWGG	2 cut(s)	682, 733
PspFI	CCCAGC	1 cut(s)	967
PspGI	CCWGG	2 cut(s)	682, 733
PspN4I	GGNNCC	2 cut(s)	6, 440
PspPI	GGNCC	5 cut(s)	4, 151, 161, 745, 935
PspPPI	RGGWCCY	2 cut(s)	151, 745
PsyI	GACNNNGTC	1 cut(s)	464
RsaI	GTAC	6 cut(s)	350, 518, 842, 852, 977, 1001
RsaNI	GTAC	6 cut(s)	349, 517, 841, 851, 976, 1000
RseI	CAYNNNNRTG	2 cut(s)	527, 693
SacI	GAGCTC	1 cut(s)	951
SaqAI	TTAA	3 cut(s)	234, 600, 1056
SatI	GCNGC	2 cut(s)	623, 1042
Sau3AI	GATC	2 cut(s)	142, 894
Sau96I	GGNCC	5 cut(s)	4, 151, 161, 745, 935
ScaI	AGTACT	2 cut(s)	518, 1001
SchI	GAGTC	1 cut(s)	372
ScrFI	CCNGG	2 cut(s)	684, 735
SduI	GDGCHC	1 cut(s)	951
SfaNI	GCATC	4 cut(s)	109, 685, 807, 913
SinI	GGWCC	2 cut(s)	151, 745
SmiMI	CAYNNNNRTG	2 cut(s)	527, 693
SmlI	CTYRAG	3 cut(s)	146, 304, 554
SmoI	CTYRAG	3 cut(s)	146, 304, 554
SphI	GCATGC	1 cut(s)	204
Sse9I	AATT	6 cut(s)	231, 320, 637, 825, 930, 1010
SspI	AATATT	1 cut(s)	805
SspMI	CTAG	2 cut(s)	197, 258
SstI	GAGCTC	1 cut(s)	951
StyD4I	CCNGG	2 cut(s)	682, 733
StyI	CCWWGG	2 cut(s)	157, 942
TaaI	ACNGT	4 cut(s)	89, 593, 712, 875
TaiI	ACGT	2 cut(s)	248, 399
TaqI	TCGA	1 cut(s)	893
TasI	AATT	6 cut(s)	231, 320, 637, 825, 930, 1010
TatI	WGTACW	5 cut(s)	348, 516, 850, 975, 999
Tru1I	TTAA	3 cut(s)	234, 600, 1056
Tru9I	TTAA	3 cut(s)	234, 600, 1056
TscAI	CASTG	3 cut(s)	106, 612, 715
TseI	GCWGC	2 cut(s)	622, 1041
TspDTI	ATGAA	2 cut(s)	741, 784
TspRI	CASTG	3 cut(s)	106, 612, 715
Tth111I	GACNNNGTC	1 cut(s)	464
VpaK11BI	GGWCC	2 cut(s)	151, 745
XapI	RAATTY	1 cut(s)	1010
XceI	RCATGY	1 cut(s)	204
XspI	CTAG	2 cut(s)	197, 258
ZrmI	AGTACT	2 cut(s)	518, 1001

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.