Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0002796

Physical Location & Seq

Genomic Coordinates Forward (+)

14405734 .. 14408950

Gene Structure 3217 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027730

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGGCACCTCCAAATTCAGCACTCATATCCGACCTTGTATCTGGTGCAGCCCATGTTCCTTCTCAATTCGTCCGACCCGAACATGATCGTCCCAATCTTGACCAGGTCATTCAGTCCTCTGATATGTCCATTCCTCTCATCGATCTCCAAGATTTCGACGGCTCACGGCGCTCAGAAATCATTGAGCAGATCGGCCTTGCCTGCCAAGACTATGGCTTTTTTCAGGTTAAAAACCATGGAATTGACGAGGCAGTGATCGATAACTTGCTGGCTGTGGCAAAGGAGTTTTTCCATTTGCCAGAGAGTGAAAGGATGAAGGTTTACTCTGAAGACCCTTATAAGACCATAAGACTGTCGACTAGCTTCAATGTCAGAGTTGAGGAAGTATCCTGCTGGAGAGATTACCTAAGACTCCACTGCCACCCTCTAGAGGATTATATTCATGAGTGGCCAGCCAACCCTCCCTCTTTCAGGGAAGATGTGGCAGAGTATTGCAAGAAAGTGAGAGGCCTTGCGGTGAGACTCCTTCAAGGCATATCTGAAAGCCTAGGACTGGAACGAGACTACATCAACAAGGCCCTAGCAAAGCATGGGCAGCACATGGCGATCAATTACTATCCGCCATGCCCTCAGCCAGAGCTGACCTACGGCTTACCCGGGCATGCTGACCCGAACGTCGTCACCCTCCTCCTCCAGGACGACGTGGGAGGCTTGCAGGTTCTCAAGGGCGGGAAATGGGTTGCTGTCAAGCCCATTCCTCACACCTTCATCGTCAACCTCGGCGACCAAATGCAGAGTGTACTCCACCGCGCAGTGGTGAATAGCGACAAGGAAAGGATCTCCATCCCAACATTCTACTGCCCATCATACGATGCTGTGATCAAACCTGCCCCGAAACTGGTTGATGATGATCATCCGGCCCTCTACCGCAGCTTCACTTACGGTGAATTCTACGGGAATTTCTGGGACAAGGACATTAATAAGAAATCTGGAACCAGTTTAGGCATGTTTAAAACAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

341

Amino Acids

38.44

Weight (kDa)

5.61

Isoelectric Point (pI)

45.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	44 - 152	6.2e-30	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	199 - 288	1.5e-30	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10490 AT4G10500
fragaria_vesca	FvH4_5g10430 FvH4_7g17840
malus_domestica	MD01G1090000.v1.1 MD06G1124100.v1.1 MD14G1140400.v1.1 MD14G1140700.v1.1 MD14G1141000.v1.1 MD14G1141200.v1.1
prunus_persica	Prupe.2G199700_v2.0.a1 Prupe.2G200200_v2.0.a1 Prupe.2G200200_v2.0.a1 Prupe.2G200200_v2.0.a1 Prupe.5G134500_v2.0.a1 Prupe.5G134700_v2.0.a1
pyrus_communis	pycom01g11450 pycom06g11450 pycom14g11590
rosa_chinensis	RchiOBHm_Chr1g0361261 RchiOBHm_Chr7g0187801
rosa_laevigata	RLG00000004755 RLG00000027730
rosa_multiflora	Rmu_sc0002119.1_g000038 Rmu_sc0004483.1_g000038
rosa_roxburghii	Rroxscaffold_3G00267060 Rroxscaffold_4G00295120
rosa_rugosa	Rorug01G0287700 Rorug01G0287700 Rorug02G0186700 Rorug06G0484300
rosa_samantha	Rh1AG299000 Rh1BG262900 Rh1CG280300 Rh1DG292900 Rh7CG090300 Rh7DG091900
rosa_wichuraiana	Rw1G026450 Rw7G007720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	339
AasI	GACNNNNNNGTC	1 cut(s)	674
Acc36I	ACCTGC	2 cut(s)	706, 895
AccB1I	GGYRCC	1 cut(s)	4
AccI	GTMKAC	1 cut(s)	356
AccII	CGCG	1 cut(s)	810
AciI	CCGC	5 cut(s)	515, 620, 729, 808, 928
AclWI	GGATC	1 cut(s)	845
AcoI	YGGCCR	1 cut(s)	449
AcsI	RAATTY	3 cut(s)	13, 947, 958
AcuI	CTGAAG	1 cut(s)	348
AfaI	GTAC	1 cut(s)	801
AfiI	CCNNNNNNNGG	6 cut(s)	430, 471, 553, 694, 814, 898
AgsI	TTSAA	2 cut(s)	367, 530
AjiI	CACGTC	1 cut(s)	703
AjnI	CCWGG	2 cut(s)	102, 693
AluBI	AGCT	3 cut(s)	363, 640, 933
AluI	AGCT	3 cut(s)	363, 640, 933
Alw26I	GTCTC	2 cut(s)	514, 555
AlwI	GGATC	1 cut(s)	845
Ama87I	CYCGRG	1 cut(s)	656
AoxI	GGCC	5 cut(s)	193, 449, 508, 576, 918
ApeKI	GCWGC	3 cut(s)	47, 595, 930
ApoI	RAATTY	3 cut(s)	13, 947, 958
AseI	ATTAAT	1 cut(s)	978
AspA2I	CCTAGG	1 cut(s)	547
AspLEI	GCGC	2 cut(s)	171, 812
AspS9I	GGNCC	2 cut(s)	577, 919
AsuC2I	CCSGG	2 cut(s)	657, 658
AsuHPI	GGTGA	4 cut(s)	529, 673, 829, 956
AvaI	CYCGRG	1 cut(s)	656
AvrII	CCTAGG	1 cut(s)	547
BalI	TGGCCA	1 cut(s)	451
BanI	GGYRCC	1 cut(s)	4
BbsI	GAAGAC	1 cut(s)	336
BbvCI	CCTCAGC	1 cut(s)	630
BbvI	GCAGC	3 cut(s)	59, 607, 942
BccI	CCATC	2 cut(s)	851, 871
BceAI	ACGGC	3 cut(s)	175, 182, 664
BciT130I	CCWGG	2 cut(s)	104, 695
BciVI	GTATCC	1 cut(s)	397
BclI	TGATCA	2 cut(s)	879, 910
BcnI	CCSGG	2 cut(s)	657, 658
BcoDI	GTCTC	2 cut(s)	514, 555
BfaI	CTAG	5 cut(s)	360, 428, 548, 581, 1021
BfoI	RGCGCY	1 cut(s)	172
BfuAI	ACCTGC	2 cut(s)	706, 895
BfuI	GTATCC	1 cut(s)	397
BisI	GCNGC	3 cut(s)	48, 596, 931
BlnI	CCTAGG	1 cut(s)	547
BlsI	GCNGC	3 cut(s)	49, 597, 932
Bme1390I	CCNGG	4 cut(s)	104, 657, 658, 695
BmeT110I	CYCGRG	1 cut(s)	656
BmgBI	CACGTC	1 cut(s)	703
BmgT120I	GGNCC	2 cut(s)	577, 919
BmiI	GGNNCC	2 cut(s)	6, 994
BmrFI	CCNGG	4 cut(s)	104, 657, 658, 695
BmsI	GCATC	1 cut(s)	862
BpiI	GAAGAC	1 cut(s)	336
BpmI	CTGGAG	2 cut(s)	415, 677
Bpu10I	CCTNAGC	1 cut(s)	630
BpuEI	CTTGAG	1 cut(s)	707
BpuMI	CCSGG	2 cut(s)	657, 658
Bsa29I	ATCGAT	2 cut(s)	141, 258
BsaBI	GATNNNNATC	3 cut(s)	842, 909, 912
BsaJI	CCNNGG	4 cut(s)	235, 547, 656, 778
Bsc4I	CCNNNNNNNGG	6 cut(s)	430, 471, 553, 694, 814, 898
Bse1I	ACTGG	3 cut(s)	558, 903, 996
Bse8I	GATNNNNATC	3 cut(s)	842, 909, 912
BseBI	CCWGG	2 cut(s)	104, 695
BseCI	ATCGAT	2 cut(s)	141, 258
BseDI	CCNNGG	4 cut(s)	235, 547, 656, 778
BseGI	GGATG	3 cut(s)	318, 843, 913
BseJI	GATNNNNATC	3 cut(s)	842, 909, 912
BseLI	CCNNNNNNNGG	6 cut(s)	430, 471, 553, 694, 814, 898
BseMII	CTCAG	2 cut(s)	186, 644
BseNI	ACTGG	3 cut(s)	558, 903, 996
BseRI	GAGGAG	2 cut(s)	677, 680
BseXI	GCAGC	3 cut(s)	59, 607, 942
BsgI	GTGCAG	1 cut(s)	66
Bsh1236I	CGCG	1 cut(s)	810
BshFI	GGCC	5 cut(s)	195, 451, 510, 578, 920
BshNI	GGYRCC	1 cut(s)	4
BshVI	ATCGAT	2 cut(s)	141, 258
BsiHKCI	CYCGRG	1 cut(s)	656
BsiSI	CCGG	2 cut(s)	657, 917
BslFI	GGGAC	2 cut(s)	75, 980
BslI	CCNNNNNNNGG	6 cut(s)	430, 471, 553, 694, 814, 898
BsmAI	GTCTC	2 cut(s)	514, 555
BsmFI	GGGAC	2 cut(s)	75, 980
BsnI	GGCC	5 cut(s)	195, 451, 510, 578, 920
BsoBI	CYCGRG	1 cut(s)	656
Bsp143I	GATC	8 cut(s)	85, 142, 189, 255, 606, 837, 879, 910
Bsp19I	CCATGG	1 cut(s)	235
BspACI	CCGC	5 cut(s)	515, 620, 729, 808, 928
BspANI	GGCC	5 cut(s)	195, 451, 510, 578, 920
BspCNI	CTCAG	2 cut(s)	185, 643
BspDI	ATCGAT	2 cut(s)	141, 258
BspFNI	CGCG	1 cut(s)	810
BspHI	TCATGA	1 cut(s)	442
BspLI	GGNNCC	2 cut(s)	6, 994
BspMI	ACCTGC	2 cut(s)	706, 895
BspPI	GGATC	1 cut(s)	845
BspT107I	GGYRCC	1 cut(s)	4
BsrI	ACTGG	3 cut(s)	558, 903, 996
BssECI	CCNNGG	4 cut(s)	235, 547, 656, 778
BssMI	GATC	8 cut(s)	85, 142, 189, 255, 606, 837, 879, 910
BssT1I	CCWWGG	2 cut(s)	235, 547
Bst2UI	CCWGG	2 cut(s)	104, 695
Bst4CI	ACNGT	2 cut(s)	354, 944
BstC8I	GCNNGC	5 cut(s)	202, 270, 453, 663, 713
BstDEI	CTNAG	3 cut(s)	172, 407, 630
BstDSI	CCRYGG	1 cut(s)	235
BstENI	CCTNNNNNAGG	2 cut(s)	469, 692
BstF5I	GGATG	3 cut(s)	318, 843, 913
BstFNI	CGCG	1 cut(s)	810
BstH2I	RGCGCY	1 cut(s)	172
BstHHI	GCGC	2 cut(s)	171, 812
BstKTI	GATC	8 cut(s)	88, 145, 192, 258, 609, 840, 882, 913
BstMAI	GTCTC	2 cut(s)	514, 555
BstMBI	GATC	8 cut(s)	85, 142, 189, 255, 606, 837, 879, 910
BstMWI	GCNNNNNNNGC	3 cut(s)	168, 201, 595
BstNI	CCWGG	2 cut(s)	104, 695
BstNSI	RCATGY	2 cut(s)	665, 1009
BstSCI	CCNGG	4 cut(s)	102, 655, 656, 693
BstUI	CGCG	1 cut(s)	810
BstV1I	GCAGC	3 cut(s)	59, 607, 942
BstV2I	GAAGAC	1 cut(s)	336
BstX2I	RGATCY	1 cut(s)	837
BstXI	CCANNNNNNTGG	1 cut(s)	212
BstYI	RGATCY	1 cut(s)	837
Bsu15I	ATCGAT	2 cut(s)	141, 258
BsuI	GTATCC	1 cut(s)	397
BsuRI	GGCC	5 cut(s)	195, 451, 510, 578, 920
BsuTUI	ATCGAT	2 cut(s)	141, 258
BtgI	CCRYGG	1 cut(s)	235
BtrI	CACGTC	1 cut(s)	703
BtsCI	GGATG	3 cut(s)	318, 843, 913
BtsI	GCAGTG	3 cut(s)	258, 415, 819
BtsIMutI	CAGTG	3 cut(s)	258, 415, 819
BveI	ACCTGC	2 cut(s)	706, 895
Cac8I	GCNNGC	5 cut(s)	202, 270, 453, 663, 713
CciI	TCATGA	1 cut(s)	442
CfoI	GCGC	2 cut(s)	171, 812
Cfr13I	GGNCC	2 cut(s)	577, 919
Cfr9I	CCCGGG	1 cut(s)	656
ClaI	ATCGAT	2 cut(s)	141, 258
CsiI	ACCWGGT	1 cut(s)	102
Csp6I	GTAC	1 cut(s)	800
CviAII	CATG	9 cut(s)	53, 83, 236, 443, 590, 601, 624, 662, 1006
CviQI	GTAC	1 cut(s)	800
DdeI	CTNAG	3 cut(s)	172, 407, 630
DpnI	GATC	8 cut(s)	87, 144, 191, 257, 608, 839, 881, 912
DpnII	GATC	8 cut(s)	85, 142, 189, 255, 606, 837, 879, 910
DraI	TTTAAA	1 cut(s)	1012
DrdI	GACNNNNNNGTC	1 cut(s)	674
DseDI	GACNNNNNNGTC	1 cut(s)	674
EaeI	YGGCCR	1 cut(s)	449
EciI	GGCGGA	1 cut(s)	609
Eco130I	CCWWGG	2 cut(s)	235, 547
Eco147I	AGGCCT	1 cut(s)	510
Eco57I	CTGAAG	1 cut(s)	348
Eco88I	CYCGRG	1 cut(s)	656
EcoNI	CCTNNNNNAGG	2 cut(s)	469, 692
EcoO109I	RGGNCCY	1 cut(s)	577
EcoRI	GAATTC	1 cut(s)	947
EcoRII	CCWGG	2 cut(s)	102, 693
EcoT14I	CCWWGG	2 cut(s)	235, 547
ErhI	CCWWGG	2 cut(s)	235, 547
FaeI	CATG	9 cut(s)	56, 86, 239, 446, 593, 604, 627, 665, 1009
FaqI	GGGAC	2 cut(s)	75, 980
FatI	CATG	9 cut(s)	52, 82, 235, 442, 589, 600, 623, 661, 1005
FauI	CCCGC	1 cut(s)	722
FbaI	TGATCA	2 cut(s)	879, 910
FblI	GTMKAC	1 cut(s)	356
Fnu4HI	GCNGC	3 cut(s)	48, 596, 931
FokI	GGATG	3 cut(s)	325, 830, 900
Fsp4HI	GCNGC	3 cut(s)	48, 596, 931
FspBI	CTAG	5 cut(s)	360, 428, 548, 581, 1021
GlaI	GCGC	2 cut(s)	170, 811
GluI	GCNGC	3 cut(s)	48, 596, 931
GsuI	CTGGAG	2 cut(s)	415, 677
HaeII	RGCGCY	1 cut(s)	172
HaeIII	GGCC	5 cut(s)	195, 451, 510, 578, 920
HapII	CCGG	2 cut(s)	657, 917
HhaI	GCGC	2 cut(s)	171, 812
Hin1II	CATG	9 cut(s)	56, 86, 239, 446, 593, 604, 627, 665, 1009
Hin6I	GCGC	2 cut(s)	169, 810
HinP1I	GCGC	2 cut(s)	169, 810
HincII	GTYRAC	2 cut(s)	357, 775
HindII	GTYRAC	2 cut(s)	357, 775
HinfI	GANTC	2 cut(s)	411, 522
HpaII	CCGG	2 cut(s)	657, 917
HphI	GGTGA	4 cut(s)	529, 673, 829, 956
Hpy166II	GTNNAC	4 cut(s)	322, 357, 775, 800
Hpy188I	TCNGA	7 cut(s)	31, 74, 121, 175, 328, 374, 541
Hpy188III	TCNNGA	4 cut(s)	98, 428, 443, 990
Hpy8I	GTNNAC	4 cut(s)	322, 357, 775, 800
Hpy99I	CGWCG	3 cut(s)	161, 680, 704
HpyAV	CCTTC	4 cut(s)	69, 310, 536, 775
HpyCH4III	ACNGT	2 cut(s)	354, 944
HpyCH4IV	ACGT	2 cut(s)	675, 702
HpyCH4V	TGCA	4 cut(s)	47, 495, 715, 793
HpyF10VI	GCNNNNNNNGC	3 cut(s)	168, 201, 595
HpyF3I	CTNAG	3 cut(s)	172, 407, 630
HpySE526I	ACGT	2 cut(s)	675, 702
Hsp92II	CATG	9 cut(s)	56, 86, 239, 446, 593, 604, 627, 665, 1009
HspAI	GCGC	2 cut(s)	169, 810
Ksp22I	TGATCA	2 cut(s)	879, 910
Kzo9I	GATC	8 cut(s)	85, 142, 189, 255, 606, 837, 879, 910
Lsp1109I	GCAGC	3 cut(s)	59, 607, 942
LweI	GCATC	1 cut(s)	862
MabI	ACCWGGT	1 cut(s)	102
MaeI	CTAG	5 cut(s)	360, 428, 548, 581, 1021
MaeII	ACGT	2 cut(s)	675, 702
MaeIII	GTNAC	1 cut(s)	679
MalI	GATC	8 cut(s)	87, 144, 191, 257, 608, 839, 881, 912
MboI	GATC	8 cut(s)	85, 142, 189, 255, 606, 837, 879, 910
MboII	GAAGA	2 cut(s)	341, 488
MflI	RGATCY	1 cut(s)	837
MlsI	TGGCCA	1 cut(s)	451
MluCI	AATT	6 cut(s)	13, 65, 240, 610, 947, 958
MluNI	TGGCCA	1 cut(s)	451
MlyI	GAGTC	2 cut(s)	405, 516
MmeI	TCCRAC	2 cut(s)	54, 97
Mox20I	TGGCCA	1 cut(s)	451
MscI	TGGCCA	1 cut(s)	451
MseI	TTAA	3 cut(s)	228, 978, 1011
Msp20I	TGGCCA	1 cut(s)	451
MspI	CCGG	2 cut(s)	657, 917
MspR9I	CCNGG	4 cut(s)	104, 657, 658, 695
MvaI	CCWGG	2 cut(s)	104, 695
MvnI	CGCG	1 cut(s)	810
MwoI	GCNNNNNNNGC	3 cut(s)	168, 201, 595
NciI	CCSGG	2 cut(s)	657, 658
NcoI	CCATGG	1 cut(s)	235
NdeII	GATC	8 cut(s)	85, 142, 189, 255, 606, 837, 879, 910
NlaIII	CATG	9 cut(s)	56, 86, 239, 446, 593, 604, 627, 665, 1009
NlaIV	GGNNCC	2 cut(s)	6, 994
NmeAIII	GCCGAG	1 cut(s)	759
NmuCI	GTSAC	1 cut(s)	679
NspI	RCATGY	2 cut(s)	665, 1009
PaeI	GCATGC	1 cut(s)	665
PagI	TCATGA	1 cut(s)	442
PceI	AGGCCT	1 cut(s)	510
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PflFI	GACNNNGTC	1 cut(s)	104
PfoI	TCCNGGA	1 cut(s)	693
PkrI	GCNGC	3 cut(s)	49, 597, 932
PleI	GAGTC	2 cut(s)	405, 516
PpsI	GAGTC	2 cut(s)	405, 516
PshBI	ATTAAT	1 cut(s)	978
PsiI	TTATAA	1 cut(s)	339
Psp6I	CCWGG	2 cut(s)	102, 693
PspGI	CCWGG	2 cut(s)	102, 693
PspN4I	GGNNCC	2 cut(s)	6, 994
PspPI	GGNCC	2 cut(s)	577, 919
PsuI	RGATCY	1 cut(s)	837
PsyI	GACNNNGTC	1 cut(s)	104
RsaI	GTAC	1 cut(s)	801
RsaNI	GTAC	1 cut(s)	800
SalI	GTCGAC	1 cut(s)	355
SaqAI	TTAA	3 cut(s)	228, 978, 1011
SatI	GCNGC	3 cut(s)	48, 596, 931
Sau3AI	GATC	8 cut(s)	85, 142, 189, 255, 606, 837, 879, 910
Sau96I	GGNCC	2 cut(s)	577, 919
SchI	GAGTC	2 cut(s)	405, 516
ScrFI	CCNGG	4 cut(s)	104, 657, 658, 695
SexAI	ACCWGGT	1 cut(s)	102
SfaNI	GCATC	1 cut(s)	862
SmaI	CCCGGG	1 cut(s)	658
SmlI	CTYRAG	1 cut(s)	722
SmoI	CTYRAG	1 cut(s)	722
SphI	GCATGC	1 cut(s)	665
Sse9I	AATT	6 cut(s)	13, 65, 240, 610, 947, 958
SseBI	AGGCCT	1 cut(s)	510
SsiI	CCGC	5 cut(s)	515, 620, 729, 808, 928
SspMI	CTAG	5 cut(s)	360, 428, 548, 581, 1021
StuI	AGGCCT	1 cut(s)	510
StyD4I	CCNGG	4 cut(s)	102, 655, 656, 693
StyI	CCWWGG	2 cut(s)	235, 547
TaaI	ACNGT	2 cut(s)	354, 944
TaiI	ACGT	2 cut(s)	678, 705
TaqI	TCGA	4 cut(s)	141, 156, 258, 356
TasI	AATT	6 cut(s)	13, 65, 240, 610, 947, 958
TatI	WGTACW	1 cut(s)	799
Tru1I	TTAA	3 cut(s)	228, 978, 1011
Tru9I	TTAA	3 cut(s)	228, 978, 1011
TscAI	CASTG	3 cut(s)	258, 422, 819
TseFI	GTSAC	1 cut(s)	679
TseI	GCWGC	3 cut(s)	47, 595, 930
Tsp45I	GTSAC	1 cut(s)	679
TspDTI	ATGAA	3 cut(s)	329, 431, 757
TspMI	CCCGGG	1 cut(s)	656
TspRI	CASTG	3 cut(s)	258, 422, 819
Tth111I	GACNNNGTC	1 cut(s)	104
VspI	ATTAAT	1 cut(s)	978
XagI	CCTNNNNNAGG	2 cut(s)	469, 692
XapI	RAATTY	3 cut(s)	13, 947, 958
XbaI	TCTAGA	1 cut(s)	427
XceI	RCATGY	2 cut(s)	665, 1009
XmaI	CCCGGG	1 cut(s)	656
XmaJI	CCTAGG	1 cut(s)	547
XmiI	GTMKAC	1 cut(s)	356
XspI	CTAG	5 cut(s)	360, 428, 548, 581, 1021

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.