Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002796

Physical Location & Seq

Genomic Coordinates Forward (+)

6491017 .. 6492578

Gene Structure 1562 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G10500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGGCAACTTCTGCAATATCTAAGCTCTTAGTGTCTGATTTCGCCTCCTCCGTTCACATCCCTTCAAACTATGTCCGACCAATCTCCGACCGTCCGAACTTGTCCGAGGTCGAGAGTTCTGGCGATTCCATCCCTCTGATCGATCTCCGGGACCTCCATGGACCTAATCGAGCCGTAATTGTCCAACAACTTGCTAGTGCGTGTTCCACTTATGGTTTCTTTCAGATCAAGAATCATGGAGTACCAGATACAACCGTCAATAAAATGCAAACCGTTGCGAGAGAGTTCTTCCATCAACCCGAGAGCGAAAGAGTCAAACACTACTCCGCAGATCCAACAAAGACAACGAGACTCTCCACCAGTTTCAACGTCGGCGCAGACAAAGTCTTGAACTGGAGAGACTTCCTTAGACTCCATTGCTTTCCCATAGAAGATTTCATCGAAGAATGGCCATCTAGTCCCATCTCTTTCAGAGAAGTCACAGCTGAATATGCCACGAGCGTAAGAGCTTTGGTTTTGAGACTTCTTGAGGCCATCTCAGAGAGTTTAGGCCTTGAAAGCGACCATATAAGCAATATATTAGGCAAACACGCTCAACACATGGCGTTTAACTACTATCCGCCGTGTCCAGAACCCGAGCTAACTTACGGACTTCCCGGACATAAAGACCCAACCGTTATCACTGTCCTTCTTCAAGACCAAGTCTCTGGTTTGCAAGTCTTTAAGGATGATAAATGGGTCGCTGTTAGTCCAATTCCCAACACTTTCATCGTCAATATCGGCGACCAAATGCAGGTCATAAGCAATGATAAATACAAGAGTGTGCTCCATAGAGCCGTAGTAAACACCGAGAACGAGCGGTTATCGATTCCGACTTTCTATTTCCCTTCAACAGATGCAGTGATTGGTCCAGCACACGAGCTGGTCAATGAACAAGACTCTCTTGCCATTTACAGAACCTACCCGTTTGTTGAGTATTGGGACAAGTTTTGGAACAGATCACTTGCTACTGCGAGCTGTCTAGACGCCTTCAAAGCTCCAACAACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002229 GO:0002239 GO:0006082 GO:0006725 GO:0006950 GO:0006952 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009056 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009696 GO:0009719 GO:0009725 GO:0009751 GO:0009987 GO:0010033 GO:0010150 GO:0010817 GO:0014070 GO:0016054 GO:0016999 GO:0017001 GO:0017144 GO:0018958 GO:0019336 GO:0019439 GO:0019752 GO:0032501 GO:0032502 GO:0032787 GO:0042221 GO:0042445 GO:0042447 GO:0042493 GO:0042537 GO:0042737 GO:0043207 GO:0043436 GO:0044237 GO:0044248 GO:0044281 GO:0044282 GO:0046244 GO:0046395 GO:0046677 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0065008 GO:0071704 GO:0072329 GO:0090693 GO:0098542 GO:0099402 GO:1901360 GO:1901361 GO:1901575 GO:1901615 GO:1901616 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

349

Amino Acids

39.23

Weight (kDa)

5.53

Isoelectric Point (pI)

46.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	44 - 152	1.6e-26	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	199 - 296	1.2e-37	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10490 AT4G10500
fragaria_vesca	FvH4_5g10430 FvH4_7g17840
malus_domestica	MD01G1090000.v1.1 MD06G1124100.v1.1 MD14G1140400.v1.1 MD14G1140700.v1.1 MD14G1141000.v1.1 MD14G1141200.v1.1
prunus_persica	Prupe.2G199700_v2.0.a1 Prupe.2G200200_v2.0.a1 Prupe.2G200200_v2.0.a1 Prupe.2G200200_v2.0.a1 Prupe.5G134500_v2.0.a1 Prupe.5G134700_v2.0.a1
pyrus_communis	pycom01g11450 pycom06g11450 pycom14g11590
rosa_chinensis	RchiOBHm_Chr1g0361261 RchiOBHm_Chr7g0187801
rosa_laevigata	RLG00000004755 RLG00000027730
rosa_multiflora	Rmu_sc0002119.1_g000038 Rmu_sc0004483.1_g000038
rosa_roxburghii	Rroxscaffold_3G00267060 Rroxscaffold_4G00295120
rosa_rugosa	Rorug01G0287700 Rorug01G0287700 Rorug02G0186700 Rorug06G0484300
rosa_samantha	Rh1AG299000 Rh1BG262900 Rh1CG280300 Rh1DG292900 Rh7CG090300 Rh7DG091900
rosa_wichuraiana	Rw1G026450 Rw7G007720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	784
AccBSI	CCGCTC	1 cut(s)	859
AciI	CCGC	3 cut(s)	327, 620, 859
AclWI	GGATC	1 cut(s)	326
AcoI	YGGCCR	1 cut(s)	449
AcyI	GRCGYC	1 cut(s)	1026
AfaI	GTAC	1 cut(s)	243
AfiI	CCNNNNNNNGG	1 cut(s)	793
AgsI	TTSAA	7 cut(s)	66, 367, 391, 557, 695, 891, 1033
AluBI	AGCT	7 cut(s)	25, 485, 509, 640, 922, 1017, 1037
AluI	AGCT	7 cut(s)	25, 485, 509, 640, 922, 1017, 1037
Alw21I	GWGCWC	1 cut(s)	828
Alw26I	GTCTC	4 cut(s)	343, 393, 514, 709
AlwI	GGATC	1 cut(s)	326
Ama87I	CYCGRG	2 cut(s)	299, 635
AoxI	GGCC	3 cut(s)	449, 531, 550
AspLEI	GCGC	1 cut(s)	377
AspS9I	GGNCC	3 cut(s)	151, 161, 908
AsuC2I	CCSGG	2 cut(s)	149, 657
AvaI	CYCGRG	2 cut(s)	299, 635
AvaII	GGWCC	3 cut(s)	151, 161, 908
BaeI	ACNNNNGTAYC	2 cut(s)	240, 273
BalI	TGGCCA	1 cut(s)	451
BauI	CACGAG	2 cut(s)	496, 917
Bbv12I	GWGCWC	1 cut(s)	828
BccI	CCATC	5 cut(s)	137, 300, 460, 470, 542
BceAI	ACGGC	3 cut(s)	158, 607, 821
BcnI	CCSGG	2 cut(s)	149, 657
BcoDI	GTCTC	4 cut(s)	343, 393, 514, 709
BfaI	CTAG	3 cut(s)	195, 456, 1022
BfuAI	ACCTGC	1 cut(s)	784
Bme1390I	CCNGG	2 cut(s)	149, 657
Bme18I	GGWCC	3 cut(s)	151, 161, 908
BmeT110I	CYCGRG	2 cut(s)	299, 635
BmgT120I	GGNCC	3 cut(s)	151, 161, 908
BmiI	GGNNCC	1 cut(s)	152
BmrFI	CCNGG	2 cut(s)	149, 657
BmsI	GCATC	1 cut(s)	886
BplI	GAGNNNNNCTC	2 cut(s)	521, 553
BpmI	CTGGAG	1 cut(s)	415
BpuEI	CTTGAG	1 cut(s)	548
BpuMI	CCSGG	2 cut(s)	149, 657
Bsa29I	ATCGAT	2 cut(s)	141, 866
BsaHI	GRCGYC	1 cut(s)	1026
BsaJI	CCNNGG	2 cut(s)	105, 157
Bsc4I	CCNNNNNNNGG	1 cut(s)	793
Bse1I	ACTGG	2 cut(s)	360, 398
Bse3DI	GCAATG	2 cut(s)	415, 811
BseCI	ATCGAT	2 cut(s)	141, 866
BseDI	CCNNGG	2 cut(s)	105, 157
BseGI	GGATG	3 cut(s)	57, 129, 733
BseLI	CCNNNNNNNGG	1 cut(s)	793
BseMI	GCAATG	2 cut(s)	415, 811
BseMII	CTCAG	1 cut(s)	552
BseNI	ACTGG	2 cut(s)	360, 398
BseRI	GAGGAG	1 cut(s)	37
Bsh1285I	CGRYCG	1 cut(s)	91
BshFI	GGCC	3 cut(s)	451, 533, 552
BshVI	ATCGAT	2 cut(s)	141, 866
BsiEI	CGRYCG	1 cut(s)	91
BsiHKAI	GWGCWC	1 cut(s)	828
BsiHKCI	CYCGRG	2 cut(s)	299, 635
BsiSI	CCGG	2 cut(s)	148, 657
BslFI	GGGAC	3 cut(s)	164, 444, 995
BslI	CCNNNNNNNGG	1 cut(s)	793
BsmAI	GTCTC	4 cut(s)	343, 393, 514, 709
BsmFI	GGGAC	3 cut(s)	164, 444, 995
BsnI	GGCC	3 cut(s)	451, 533, 552
BsoBI	CYCGRG	2 cut(s)	299, 635
Bsp1286I	GDGCHC	1 cut(s)	828
Bsp143I	GATC	5 cut(s)	138, 142, 225, 331, 998
Bsp19I	CCATGG	1 cut(s)	157
BspACI	CCGC	3 cut(s)	327, 620, 859
BspANI	GGCC	3 cut(s)	451, 533, 552
BspCNI	CTCAG	1 cut(s)	551
BspDI	ATCGAT	2 cut(s)	141, 866
BspLI	GGNNCC	1 cut(s)	152
BspMI	ACCTGC	1 cut(s)	784
BspPI	GGATC	1 cut(s)	326
BsrBI	CCGCTC	1 cut(s)	859
BsrDI	GCAATG	2 cut(s)	415, 811
BsrI	ACTGG	2 cut(s)	360, 398
BssECI	CCNNGG	2 cut(s)	105, 157
BssMI	GATC	5 cut(s)	138, 142, 225, 331, 998
BssNI	GRCGYC	1 cut(s)	1026
BssSI	CACGAG	2 cut(s)	496, 917
BssT1I	CCWWGG	1 cut(s)	157
Bst2BI	CACGAG	2 cut(s)	496, 917
Bst4CI	ACNGT	5 cut(s)	92, 256, 274, 676, 685
BstACI	GRCGYC	1 cut(s)	1026
BstAPI	GCANNNNNTGC	1 cut(s)	11
BstC8I	GCNNGC	1 cut(s)	1015
BstDEI	CTNAG	4 cut(s)	21, 28, 407, 538
BstDSI	CCRYGG	1 cut(s)	157
BstF5I	GGATG	3 cut(s)	57, 129, 733
BstHHI	GCGC	1 cut(s)	377
BstKTI	GATC	5 cut(s)	141, 145, 228, 334, 1001
BstMAI	GTCTC	4 cut(s)	343, 393, 514, 709
BstMBI	GATC	5 cut(s)	138, 142, 225, 331, 998
BstMCI	CGRYCG	1 cut(s)	91
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 491, 558, 1034
BstSCI	CCNGG	2 cut(s)	147, 655
BstX2I	RGATCY	1 cut(s)	331
BstXI	CCANNNNNNTGG	1 cut(s)	707
BstYI	RGATCY	1 cut(s)	331
Bsu15I	ATCGAT	2 cut(s)	141, 866
BsuRI	GGCC	3 cut(s)	451, 533, 552
BsuTUI	ATCGAT	2 cut(s)	141, 866
BtgI	CCRYGG	1 cut(s)	157
BtsCI	GGATG	3 cut(s)	57, 129, 733
BtsI	GCAGTG	1 cut(s)	906
BtsIMutI	CAGTG	2 cut(s)	681, 906
BveI	ACCTGC	1 cut(s)	784
Cac8I	GCNNGC	1 cut(s)	1015
CfoI	GCGC	1 cut(s)	377
Cfr13I	GGNCC	3 cut(s)	151, 161, 908
ClaI	ATCGAT	2 cut(s)	141, 866
CseI	GACGC	1 cut(s)	1034
Csp6I	GTAC	1 cut(s)	242
CviAII	CATG	3 cut(s)	158, 236, 601
CviQI	GTAC	1 cut(s)	242
DdeI	CTNAG	4 cut(s)	21, 28, 407, 538
DpnI	GATC	5 cut(s)	140, 144, 227, 333, 1000
DpnII	GATC	5 cut(s)	138, 142, 225, 331, 998
EaeI	YGGCCR	1 cut(s)	449
EciI	GGCGGA	1 cut(s)	609
Eco130I	CCWWGG	1 cut(s)	157
Eco147I	AGGCCT	1 cut(s)	552
Eco47I	GGWCC	3 cut(s)	151, 161, 908
Eco88I	CYCGRG	2 cut(s)	299, 635
EcoO109I	RGGNCCY	1 cut(s)	151
EcoT14I	CCWWGG	1 cut(s)	157
ErhI	CCWWGG	1 cut(s)	157
FaeI	CATG	3 cut(s)	161, 239, 604
FalI	AAGNNNNNCTT	2 cut(s)	927, 959
FaqI	GGGAC	3 cut(s)	164, 444, 995
FatI	CATG	3 cut(s)	157, 235, 600
FokI	GGATG	3 cut(s)	44, 116, 740
FspBI	CTAG	3 cut(s)	195, 456, 1022
GlaI	GCGC	1 cut(s)	376
GsuI	CTGGAG	1 cut(s)	415
HaeIII	GGCC	3 cut(s)	451, 533, 552
HapII	CCGG	2 cut(s)	148, 657
HgaI	GACGC	1 cut(s)	1034
HhaI	GCGC	1 cut(s)	377
Hin1I	GRCGYC	1 cut(s)	1026
Hin1II	CATG	3 cut(s)	161, 239, 604
Hin6I	GCGC	1 cut(s)	375
HinP1I	GCGC	1 cut(s)	375
HinfI	GANTC	7 cut(s)	125, 232, 312, 351, 411, 868, 938
HpaII	CCGG	2 cut(s)	148, 657
Hpy166II	GTNNAC	2 cut(s)	55, 844
Hpy188III	TCNNGA	7 cut(s)	112, 229, 388, 527, 629, 695, 1022
Hpy8I	GTNNAC	2 cut(s)	55, 844
Hpy99I	CGWCG	1 cut(s)	374
HpyAV	CCTTC	4 cut(s)	72, 698, 897, 1039
HpyCH4III	ACNGT	5 cut(s)	92, 256, 274, 676, 685
HpyCH4IV	ACGT	1 cut(s)	369
HpyCH4V	TGCA	5 cut(s)	14, 268, 715, 793, 899
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 491, 558, 1034
HpyF3I	CTNAG	4 cut(s)	21, 28, 407, 538
HpySE526I	ACGT	1 cut(s)	369
Hsp92I	GRCGYC	1 cut(s)	1026
Hsp92II	CATG	3 cut(s)	161, 239, 604
HspAI	GCGC	1 cut(s)	375
Kzo9I	GATC	5 cut(s)	138, 142, 225, 331, 998
LmnI	GCTCC	2 cut(s)	831, 1042
LweI	GCATC	1 cut(s)	886
MaeI	CTAG	3 cut(s)	195, 456, 1022
MaeII	ACGT	1 cut(s)	369
MaeIII	GTNAC	1 cut(s)	478
MalI	GATC	5 cut(s)	140, 144, 227, 333, 1000
MbiI	CCGCTC	1 cut(s)	859
MboI	GATC	5 cut(s)	138, 142, 225, 331, 998
MboII	GAAGA	4 cut(s)	280, 443, 455, 683
MflI	RGATCY	1 cut(s)	331
MhlI	GDGCHC	1 cut(s)	828
MlsI	TGGCCA	1 cut(s)	451
MluCI	AATT	2 cut(s)	177, 753
MluNI	TGGCCA	1 cut(s)	451
MlyI	GAGTC	4 cut(s)	321, 345, 405, 932
MmeI	TCCRAC	5 cut(s)	100, 111, 208, 359, 896
MnlI	CCTC	6 cut(s)	55, 58, 100, 144, 164, 523
Mox20I	TGGCCA	1 cut(s)	451
MscI	TGGCCA	1 cut(s)	451
MseI	TTAA	2 cut(s)	609, 723
Msp20I	TGGCCA	1 cut(s)	451
MspA1I	CMGCKG	1 cut(s)	485
MspI	CCGG	2 cut(s)	148, 657
MspR9I	CCNGG	2 cut(s)	149, 657
MwoI	GCNNNNNNNGC	4 cut(s)	11, 491, 558, 1034
NciI	CCSGG	2 cut(s)	149, 657
NcoI	CCATGG	1 cut(s)	157
NdeII	GATC	5 cut(s)	138, 142, 225, 331, 998
NlaIII	CATG	3 cut(s)	161, 239, 604
NlaIV	GGNNCC	1 cut(s)	152
NmuCI	GTSAC	1 cut(s)	478
PceI	AGGCCT	1 cut(s)	552
PcsI	WCGNNNNNNNCGW	1 cut(s)	48
PfeI	GAWTC	3 cut(s)	125, 232, 868
PflFI	GACNNNGTC	2 cut(s)	383, 701
PfoI	TCCNGGA	2 cut(s)	147, 655
PleI	GAGTC	4 cut(s)	320, 345, 405, 932
PpsI	GAGTC	4 cut(s)	320, 345, 405, 932
PpuMI	RGGWCCY	1 cut(s)	151
Psp5II	RGGWCCY	1 cut(s)	151
PspN4I	GGNNCC	1 cut(s)	152
PspPI	GGNCC	3 cut(s)	151, 161, 908
PspPPI	RGGWCCY	1 cut(s)	151
PsuI	RGATCY	1 cut(s)	331
PsyI	GACNNNGTC	2 cut(s)	383, 701
PvuII	CAGCTG	1 cut(s)	485
RsaI	GTAC	1 cut(s)	243
RsaNI	GTAC	1 cut(s)	242
SaqAI	TTAA	2 cut(s)	609, 723
Sau3AI	GATC	5 cut(s)	138, 142, 225, 331, 998
Sau96I	GGNCC	3 cut(s)	151, 161, 908
SchI	GAGTC	4 cut(s)	321, 345, 405, 932
ScrFI	CCNGG	2 cut(s)	149, 657
SduI	GDGCHC	1 cut(s)	828
SfaNI	GCATC	1 cut(s)	886
SinI	GGWCC	3 cut(s)	151, 161, 908
SmlI	CTYRAG	1 cut(s)	527
SmoI	CTYRAG	1 cut(s)	527
Sse9I	AATT	2 cut(s)	177, 753
SseBI	AGGCCT	1 cut(s)	552
SsiI	CCGC	3 cut(s)	327, 620, 859
SspMI	CTAG	3 cut(s)	195, 456, 1022
StuI	AGGCCT	1 cut(s)	552
StyD4I	CCNGG	2 cut(s)	147, 655
StyI	CCWWGG	1 cut(s)	157
TaaI	ACNGT	5 cut(s)	92, 256, 274, 676, 685
TaiI	ACGT	1 cut(s)	372
TaqI	TCGA	5 cut(s)	111, 141, 169, 441, 866
TasI	AATT	2 cut(s)	177, 753
TfiI	GAWTC	3 cut(s)	125, 232, 868
Tru1I	TTAA	2 cut(s)	609, 723
Tru9I	TTAA	2 cut(s)	609, 723
TscAI	CASTG	2 cut(s)	688, 906
TseFI	GTSAC	1 cut(s)	478
Tsp45I	GTSAC	1 cut(s)	478
TspDTI	ATGAA	3 cut(s)	427, 757, 945
TspGWI	ACGGA	2 cut(s)	40, 663
TspRI	CASTG	2 cut(s)	688, 906
Tth111I	GACNNNGTC	2 cut(s)	383, 701
VpaK11BI	GGWCC	3 cut(s)	151, 161, 908
XbaI	TCTAGA	1 cut(s)	1021
XspI	CTAG	3 cut(s)	195, 456, 1022

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.