Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0002796

Physical Location & Seq

Genomic Coordinates Forward (+)

60195757 .. 60197750

Gene Structure 1994 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00267060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGCCCCAGCAACAAAGCTACTTCTAACAGACCTCATCTCCGGCGTCAACCATGTCCCTTCAAAGTACATTCGGCCCATCTCCGACCGTCCAAATCTCGCCGACGTTCAGGTGTCATCGGAGGGCTCCATCCCTCTCATTGATCTTCAGGGCCTCAACGGTCCCAACCACTCCGATATTATCGAACAGATTGGTCAAGCTTGCCAAAATGATGGCTTCTTTCAGGTTAAAAATCATGGGGTACCGGAGGAGATGATCGATAACATGTTAAGTATAGCTAGCAAGAGAGTTTTTAGGTTGCCGGAGAGTGAGAGGATGAAGATGTACTCGGATGACCCTTCAAAGACTACAAGGCTATCCACTAGTTTCAATGTCAAGACAGAAAAAACAGCCAACTGGAGGGACTTTCTCAGGCTCCACTGTTACCCTCTGGAAGATTACGTTCACGAATGGCCTACCAATCCCCCTCCTTCAGTGAGTGAGTATTGCACAAGTGTTAGAGGACTCGTCTTAAAACTGCTTGAGGGCATATCAGAGAGCTTGGGCCTGCAAAAGGACTACATCGTGAAAGCTTTAGGCAAGCAAGCCCAACATATGGCTTTGAATTACTACCCACCATGTCCAGAGCCTGATCTTACTTATGGCTTGCCGGGACATACCGACGGTAACCTAATCACCGTACTTCTCCAAGACGATGTGCCTGGATTGCAAGTCCTTCGAAAGGGCAAATGGGTTGCTGTAAACCCTATTCCCAACACTTTCATAATCAATATTGGTGATCAAATGCAGGTGATTAGCAATGATAGGTACAAGAGTGTGCTGCACAGAGCTGTTGTGAACTGCAATAAAGAGAGAATATCAATTCCAACCTTCTACTGTCCAGCACCTGATGCATTGATTGGTCCTGCCAAGGAGCTCATCAGCCATGATCAACCAGCAATGTACAGAAACTTCACATATGCCGAGTTCTATGGGAAATTCTGGGACAGAGGACTTGCAAAAGAGTGCTGCTTAGACTTGTTTAAACAAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002229 GO:0002239 GO:0006082 GO:0006725 GO:0006950 GO:0006952 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009056 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009696 GO:0009719 GO:0009725 GO:0009751 GO:0009987 GO:0010033 GO:0010150 GO:0010817 GO:0014070 GO:0016054 GO:0016999 GO:0017001 GO:0017144 GO:0018958 GO:0019336 GO:0019439 GO:0019752 GO:0032501 GO:0032502 GO:0032787 GO:0042221 GO:0042445 GO:0042447 GO:0042493 GO:0042537 GO:0042737 GO:0043207 GO:0043436 GO:0044237 GO:0044248 GO:0044281 GO:0044282 GO:0046244 GO:0046395 GO:0046677 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0065008 GO:0071704 GO:0072329 GO:0090693 GO:0098542 GO:0099402 GO:1901360 GO:1901361 GO:1901575 GO:1901615 GO:1901616 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

344

Amino Acids

38.73

Weight (kDa)

6.15

Isoelectric Point (pI)

42.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	44 - 153	3.6e-28	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	197 - 294	1.6e-38	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10490 AT4G10500
fragaria_vesca	FvH4_5g10430 FvH4_7g17840
malus_domestica	MD01G1090000.v1.1 MD06G1124100.v1.1 MD14G1140400.v1.1 MD14G1140700.v1.1 MD14G1141000.v1.1 MD14G1141200.v1.1
prunus_persica	Prupe.2G199700_v2.0.a1 Prupe.2G200200_v2.0.a1 Prupe.2G200200_v2.0.a1 Prupe.2G200200_v2.0.a1 Prupe.5G134500_v2.0.a1 Prupe.5G134700_v2.0.a1
pyrus_communis	pycom01g11450 pycom06g11450 pycom14g11590
rosa_chinensis	RchiOBHm_Chr1g0361261 RchiOBHm_Chr7g0187801
rosa_laevigata	RLG00000004755 RLG00000027730
rosa_multiflora	Rmu_sc0002119.1_g000038 Rmu_sc0004483.1_g000038
rosa_roxburghii	Rroxscaffold_3G00267060 Rroxscaffold_4G00295120
rosa_rugosa	Rorug01G0287700 Rorug01G0287700 Rorug02G0186700 Rorug06G0484300
rosa_samantha	Rh1AG299000 Rh1BG262900 Rh1CG280300 Rh1DG292900 Rh7CG090300 Rh7DG091900
rosa_wichuraiana	Rw1G026450 Rw7G007720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	778
Acc36I	ACCTGC	1 cut(s)	778
Acc65I	GGTACC	1 cut(s)	241
AccB1I	GGYRCC	1 cut(s)	241
AccB7I	CCANNNNNTGG	1 cut(s)	595
AcsI	RAATTY	1 cut(s)	977
AcuI	CTGAAG	2 cut(s)	131, 456
AcyI	GRCGYC	1 cut(s)	45
AfaI	GTAC	6 cut(s)	68, 243, 326, 681, 809, 944
AfiI	CCNNNNNNNGG	4 cut(s)	399, 553, 595, 721
AflIII	ACRYGT	1 cut(s)	264
AgsI	TTSAA	4 cut(s)	63, 342, 370, 604
AhlI	ACTAGT	1 cut(s)	362
AjnI	CCWGG	1 cut(s)	700
AluBI	AGCT	7 cut(s)	19, 200, 278, 540, 572, 830, 916
AluI	AGCT	7 cut(s)	19, 200, 278, 540, 572, 830, 916
Alw21I	GWGCWC	1 cut(s)	918
AlwNI	CAGNNNCTG	2 cut(s)	629, 887
AoxI	GGCC	5 cut(s)	3, 74, 151, 452, 544
ApeKI	GCWGC	2 cut(s)	820, 1008
ApoI	RAATTY	1 cut(s)	977
Asp718I	GGTACC	1 cut(s)	241
AspS9I	GGNCC	6 cut(s)	4, 75, 151, 161, 544, 902
AsuC2I	CCSGG	1 cut(s)	651
AsuHPI	GGTGA	3 cut(s)	667, 788, 802
AsuII	TTCGAA	1 cut(s)	718
AsuNHI	GCTAGC	1 cut(s)	278
AvaII	GGWCC	2 cut(s)	161, 902
BaeI	ACNNNNGTAYC	2 cut(s)	799, 832
BanI	GGYRCC	1 cut(s)	241
BanII	GRGCYC	2 cut(s)	128, 918
BarI	GAAGNNNNNNTAC	2 cut(s)	935, 967
Bbv12I	GWGCWC	1 cut(s)	918
BbvI	GCAGC	2 cut(s)	807, 995
BccI	CCATC	3 cut(s)	86, 137, 206
BcgI	CGANNNNNNTGC	2 cut(s)	698, 732
BciT130I	CCWGG	1 cut(s)	702
BclI	TGATCA	2 cut(s)	778, 928
BcnI	CCSGG	1 cut(s)	651
BcuI	ACTAGT	1 cut(s)	362
BfaI	CTAG	2 cut(s)	279, 363
BfuAI	ACCTGC	1 cut(s)	778
BisI	GCNGC	2 cut(s)	821, 1009
BlsI	GCNGC	2 cut(s)	822, 1010
Bme1390I	CCNGG	2 cut(s)	651, 702
Bme18I	GGWCC	2 cut(s)	161, 902
BmgT120I	GGNCC	6 cut(s)	4, 75, 151, 161, 544, 902
BmiI	GGNNCC	5 cut(s)	6, 127, 163, 243, 416
BmrFI	CCNGG	2 cut(s)	651, 702
BmsI	GCATC	1 cut(s)	880
BmtI	GCTAGC	1 cut(s)	282
BpmI	CTGGAG	1 cut(s)	418
Bpu14I	TTCGAA	1 cut(s)	718
BpuEI	CTTGAG	1 cut(s)	542
BpuMI	CCSGG	1 cut(s)	651
Bsa29I	ATCGAT	1 cut(s)	258
BsaHI	GRCGYC	1 cut(s)	45
BsaJI	CCNNGG	1 cut(s)	909
BsaWI	WCCGGW	1 cut(s)	244
BsaXI	ACNNNNNCTCC	2 cut(s)	23, 53
Bsc4I	CCNNNNNNNGG	4 cut(s)	399, 553, 595, 721
Bse1I	ACTGG	1 cut(s)	401
Bse3DI	GCAATG	2 cut(s)	805, 945
BseBI	CCWGG	1 cut(s)	702
BseCI	ATCGAT	1 cut(s)	258
BseDI	CCNNGG	1 cut(s)	909
BseGI	GGATG	3 cut(s)	129, 321, 337
BseLI	CCNNNNNNNGG	4 cut(s)	399, 553, 595, 721
BseMI	GCAATG	2 cut(s)	805, 945
BseMII	CTCAG	1 cut(s)	424
BseNI	ACTGG	1 cut(s)	401
BseRI	GAGGAG	1 cut(s)	263
BseXI	GCAGC	2 cut(s)	807, 995
BseYI	CCCAGC	1 cut(s)	7
BsgI	GTGCAG	1 cut(s)	806
Bsh1285I	CGRYCG	1 cut(s)	88
BshFI	GGCC	5 cut(s)	5, 76, 153, 454, 546
BshNI	GGYRCC	1 cut(s)	241
BshVI	ATCGAT	1 cut(s)	258
BsiEI	CGRYCG	1 cut(s)	88
BsiHKAI	GWGCWC	1 cut(s)	918
BsiSI	CCGG	4 cut(s)	42, 245, 302, 650
BslFI	GGGAC	5 cut(s)	41, 147, 416, 666, 998
BslI	CCNNNNNNNGG	4 cut(s)	399, 553, 595, 721
BsmFI	GGGAC	5 cut(s)	41, 147, 416, 666, 998
BsnI	GGCC	5 cut(s)	5, 76, 153, 454, 546
Bsp119I	TTCGAA	1 cut(s)	718
Bsp1286I	GDGCHC	2 cut(s)	128, 918
Bsp1407I	TGTACA	1 cut(s)	942
Bsp143I	GATC	5 cut(s)	142, 255, 631, 778, 928
BspANI	GGCC	5 cut(s)	5, 76, 153, 454, 546
BspCNI	CTCAG	1 cut(s)	423
BspDI	ATCGAT	1 cut(s)	258
BspLI	GGNNCC	5 cut(s)	6, 127, 163, 243, 416
BspMI	ACCTGC	1 cut(s)	778
BspOI	GCTAGC	1 cut(s)	282
BspT104I	TTCGAA	1 cut(s)	718
BspT107I	GGYRCC	1 cut(s)	241
BsrDI	GCAATG	2 cut(s)	805, 945
BsrGI	TGTACA	1 cut(s)	942
BsrI	ACTGG	1 cut(s)	401
BssECI	CCNNGG	1 cut(s)	909
BssMI	GATC	5 cut(s)	142, 255, 631, 778, 928
BssNI	GRCGYC	1 cut(s)	45
BssT1I	CCWWGG	1 cut(s)	909
Bst2UI	CCWGG	1 cut(s)	702
Bst4CI	ACNGT	6 cut(s)	89, 161, 422, 665, 679, 878
BstACI	GRCGYC	1 cut(s)	45
BstAPI	GCANNNNNTGC	1 cut(s)	890
BstAUI	TGTACA	1 cut(s)	942
BstBI	TTCGAA	1 cut(s)	718
BstC8I	GCNNGC	6 cut(s)	202, 280, 548, 581, 585, 647
BstDEI	CTNAG	2 cut(s)	410, 1012
BstEII	GGTNACC	1 cut(s)	665
BstENI	CCTNNNNNAGG	2 cut(s)	551, 719
BstF5I	GGATG	3 cut(s)	129, 321, 337
BstKTI	GATC	5 cut(s)	145, 258, 634, 781, 931
BstMBI	GATC	5 cut(s)	142, 255, 631, 778, 928
BstMCI	CGRYCG	1 cut(s)	88
BstMWI	GCNNNNNNNGC	2 cut(s)	706, 890
BstNI	CCWGG	1 cut(s)	702
BstNSI	RCATGY	1 cut(s)	268
BstPI	GGTNACC	1 cut(s)	665
BstSCI	CCNGG	2 cut(s)	649, 700
BstV1I	GCAGC	2 cut(s)	807, 995
BstXI	CCANNNNNNTGG	1 cut(s)	212
Bsu15I	ATCGAT	1 cut(s)	258
BsuRI	GGCC	5 cut(s)	5, 76, 153, 454, 546
BsuTUI	ATCGAT	1 cut(s)	258
BtsCI	GGATG	3 cut(s)	129, 321, 337
BtsIMutI	CAGTG	2 cut(s)	418, 480
BveI	ACCTGC	1 cut(s)	778
Cac8I	GCNNGC	6 cut(s)	202, 280, 548, 581, 585, 647
CaiI	CAGNNNCTG	2 cut(s)	629, 887
Cfr13I	GGNCC	6 cut(s)	4, 75, 151, 161, 544, 902
ClaI	ATCGAT	1 cut(s)	258
CseI	GACGC	1 cut(s)	34
Csp6I	GTAC	6 cut(s)	67, 242, 325, 680, 808, 943
CviAII	CATG	5 cut(s)	53, 236, 265, 618, 926
CviQI	GTAC	6 cut(s)	67, 242, 325, 680, 808, 943
DdeI	CTNAG	2 cut(s)	410, 1012
DpnI	GATC	5 cut(s)	144, 257, 633, 780, 930
DpnII	GATC	5 cut(s)	142, 255, 631, 778, 928
DraI	TTTAAA	1 cut(s)	1024
Ecl136II	GAGCTC	1 cut(s)	916
Eco130I	CCWWGG	1 cut(s)	909
Eco24I	GRGCYC	2 cut(s)	128, 918
Eco47I	GGWCC	2 cut(s)	161, 902
Eco53kI	GAGCTC	1 cut(s)	916
Eco57I	CTGAAG	2 cut(s)	131, 456
Eco91I	GGTNACC	1 cut(s)	665
EcoICRI	GAGCTC	1 cut(s)	916
EcoNI	CCTNNNNNAGG	2 cut(s)	551, 719
EcoO109I	RGGNCCY	1 cut(s)	151
EcoO65I	GGTNACC	1 cut(s)	665
EcoRII	CCWGG	1 cut(s)	700
EcoT14I	CCWWGG	1 cut(s)	909
EcoT22I	ATGCAT	1 cut(s)	895
EcoT38I	GRGCYC	2 cut(s)	128, 918
ErhI	CCWWGG	1 cut(s)	909
FaeI	CATG	5 cut(s)	56, 239, 268, 621, 929
FaqI	GGGAC	5 cut(s)	41, 147, 416, 666, 998
FatI	CATG	5 cut(s)	52, 235, 264, 617, 925
FauNDI	CATATG	2 cut(s)	594, 958
FbaI	TGATCA	2 cut(s)	778, 928
Fnu4HI	GCNGC	2 cut(s)	821, 1009
FokI	GGATG	3 cut(s)	116, 328, 344
FriOI	GRGCYC	2 cut(s)	128, 918
Fsp4HI	GCNGC	2 cut(s)	821, 1009
FspBI	CTAG	2 cut(s)	279, 363
GluI	GCNGC	2 cut(s)	821, 1009
GsaI	CCCAGC	1 cut(s)	11
GsuI	CTGGAG	1 cut(s)	418
HaeIII	GGCC	5 cut(s)	5, 76, 153, 454, 546
HapII	CCGG	4 cut(s)	42, 245, 302, 650
HgaI	GACGC	1 cut(s)	34
Hin1I	GRCGYC	1 cut(s)	45
Hin1II	CATG	5 cut(s)	56, 239, 268, 621, 929
HincII	GTYRAC	1 cut(s)	49
HindII	GTYRAC	1 cut(s)	49
HindIII	AAGCTT	2 cut(s)	198, 570
HinfI	GANTC	1 cut(s)	504
HpaII	CCGG	4 cut(s)	42, 245, 302, 650
HphI	GGTGA	3 cut(s)	667, 788, 802
Hpy166II	GTNNAC	4 cut(s)	49, 445, 742, 838
Hpy188I	TCNGA	5 cut(s)	85, 121, 175, 331, 535
Hpy188III	TCNNGA	5 cut(s)	376, 431, 446, 565, 623
Hpy8I	GTNNAC	4 cut(s)	49, 445, 742, 838
Hpy99I	CGWCG	2 cut(s)	107, 665
HpyAV	CCTTC	5 cut(s)	69, 348, 480, 725, 880
HpyCH4III	ACNGT	6 cut(s)	89, 161, 422, 665, 679, 878
HpyCH4IV	ACGT	2 cut(s)	105, 441
HpyCH4V	TGCA	8 cut(s)	489, 550, 709, 787, 823, 843, 893, 998
HpyF10VI	GCNNNNNNNGC	2 cut(s)	706, 890
HpyF3I	CTNAG	2 cut(s)	410, 1012
HpySE526I	ACGT	2 cut(s)	105, 441
Hsp92I	GRCGYC	1 cut(s)	45
Hsp92II	CATG	5 cut(s)	56, 239, 268, 621, 929
KpnI	GGTACC	1 cut(s)	245
Ksp22I	TGATCA	2 cut(s)	778, 928
Kzo9I	GATC	5 cut(s)	142, 255, 631, 778, 928
LmnI	GCTCC	3 cut(s)	131, 420, 913
Lsp1109I	GCAGC	2 cut(s)	807, 995
LweI	GCATC	1 cut(s)	880
MaeI	CTAG	2 cut(s)	279, 363
MaeII	ACGT	2 cut(s)	105, 441
MaeIII	GTNAC	2 cut(s)	422, 665
MalI	GATC	5 cut(s)	144, 257, 633, 780, 930
MboI	GATC	5 cut(s)	142, 255, 631, 778, 928
MboII	GAAGA	3 cut(s)	137, 331, 446
MhlI	GDGCHC	2 cut(s)	128, 918
MluCI	AATT	4 cut(s)	604, 861, 977, 1030
MlyI	GAGTC	1 cut(s)	498
MmeI	TCCRAC	2 cut(s)	108, 890
Mph1103I	ATGCAT	1 cut(s)	895
MseI	TTAA	4 cut(s)	228, 269, 512, 1023
MspI	CCGG	4 cut(s)	42, 245, 302, 650
MspR9I	CCNGG	2 cut(s)	651, 702
MssI	GTTTAAAC	1 cut(s)	1024
MvaI	CCWGG	1 cut(s)	702
MwoI	GCNNNNNNNGC	2 cut(s)	706, 890
NciI	CCSGG	1 cut(s)	651
NdeI	CATATG	2 cut(s)	594, 958
NdeII	GATC	5 cut(s)	142, 255, 631, 778, 928
NheI	GCTAGC	1 cut(s)	278
NlaIII	CATG	5 cut(s)	56, 239, 268, 621, 929
NlaIV	GGNNCC	5 cut(s)	6, 127, 163, 243, 416
NmeAIII	GCCGAG	1 cut(s)	988
NsiI	ATGCAT	1 cut(s)	895
NspI	RCATGY	1 cut(s)	268
NspV	TTCGAA	1 cut(s)	718
PaqCI	CACCTGC	1 cut(s)	778
PciI	ACATGT	1 cut(s)	264
PflMI	CCANNNNNTGG	1 cut(s)	595
PkrI	GCNGC	2 cut(s)	822, 1010
PleI	GAGTC	1 cut(s)	498
PmeI	GTTTAAAC	1 cut(s)	1024
PpsI	GAGTC	1 cut(s)	498
PscI	ACATGT	1 cut(s)	264
Psp124BI	GAGCTC	1 cut(s)	918
Psp6I	CCWGG	1 cut(s)	700
PspEI	GGTNACC	1 cut(s)	665
PspFI	CCCAGC	1 cut(s)	7
PspGI	CCWGG	1 cut(s)	700
PspN4I	GGNNCC	5 cut(s)	6, 127, 163, 243, 416
PspPI	GGNCC	6 cut(s)	4, 75, 151, 161, 544, 902
PstNI	CAGNNNCTG	2 cut(s)	629, 887
RsaI	GTAC	6 cut(s)	68, 243, 326, 681, 809, 944
RsaNI	GTAC	6 cut(s)	67, 242, 325, 680, 808, 943
SacI	GAGCTC	1 cut(s)	918
SaqAI	TTAA	4 cut(s)	228, 269, 512, 1023
SatI	GCNGC	2 cut(s)	821, 1009
Sau3AI	GATC	5 cut(s)	142, 255, 631, 778, 928
Sau96I	GGNCC	6 cut(s)	4, 75, 151, 161, 544, 902
SchI	GAGTC	1 cut(s)	498
ScrFI	CCNGG	2 cut(s)	651, 702
SduI	GDGCHC	2 cut(s)	128, 918
SfaNI	GCATC	1 cut(s)	880
SfuI	TTCGAA	1 cut(s)	718
SinI	GGWCC	2 cut(s)	161, 902
SmlI	CTYRAG	1 cut(s)	521
SmoI	CTYRAG	1 cut(s)	521
SpeI	ACTAGT	1 cut(s)	362
Sse9I	AATT	4 cut(s)	604, 861, 977, 1030
SspI	AATATT	1 cut(s)	772
SspMI	CTAG	2 cut(s)	279, 363
SstI	GAGCTC	1 cut(s)	918
StyD4I	CCNGG	2 cut(s)	649, 700
StyI	CCWWGG	1 cut(s)	909
TaaI	ACNGT	6 cut(s)	89, 161, 422, 665, 679, 878
TaiI	ACGT	2 cut(s)	108, 444
TaqI	TCGA	3 cut(s)	183, 258, 718
TasI	AATT	4 cut(s)	604, 861, 977, 1030
TatI	WGTACW	3 cut(s)	66, 324, 942
Tru1I	TTAA	4 cut(s)	228, 269, 512, 1023
Tru9I	TTAA	4 cut(s)	228, 269, 512, 1023
TscAI	CASTG	2 cut(s)	425, 480
TseI	GCWGC	2 cut(s)	820, 1008
TspDTI	ATGAA	2 cut(s)	332, 751
TspRI	CASTG	2 cut(s)	425, 480
Van91I	CCANNNNNTGG	1 cut(s)	595
VpaK11BI	GGWCC	2 cut(s)	161, 902
XagI	CCTNNNNNAGG	2 cut(s)	551, 719
XapI	RAATTY	1 cut(s)	977
XceI	RCATGY	1 cut(s)	268
XspI	CTAG	2 cut(s)	279, 363
Zsp2I	ATGCAT	1 cut(s)	895

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.