Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0002796

Physical Location & Seq

Genomic Coordinates Reverse (-)

12473803 .. 12477447

Gene Structure 3645 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g11450.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGGCTACACTGTTATCCGACCTTGTGTCTGGTGCAACCCATGTTCCCTCTAACTATGTCCGACCGGCACACGATCGTCCGAATCTCGACCAGGTCCAGTCCTCCGATCACTCCATTCCTCTCATCAATCTCCAAGGCCTTGAGGATCCTAGGCGCTCGGACATAATCAAACAGATAGGCCTTGCCTGCCGAGATTACGGTTTCTTTCAGGTCCAAAACCATGGAATTGAAGAGGCCGTGATCGATAACATGCTGAGTGTATCAAAGGAGTTTTTCCATTTGCCAGAAAGTGAGAGGTTAAAGAGTTTCTCCGATGATCCACTTAAAACCACGAGGCTGTCGACGAGTTTCAATGTCAAAACTGAGGAGGTCTCCAGCTGGAGAGACTACTTAAGGCTCCACTGCCACCCTTTAGAGGACTACATGCATGAATGGCCGTCCAACCCTCCATCTTTCAGAGAAGATGTGGCTGAGTATTGCAGGAATGTGAGAGGATTAGCAGTGAGACTGCTCGAATCCATATCAGAAAGCTTAGGGTTAGAAGGGGATTACATGAACAAGGCACTGGGGAAGCATGGACAGCACATGGCAATCAATTACTATCCGACTTGTCCTCAGCCAGAGCTCACCTATGGCCTACCTGGTCATGCTGATCCTAATGTCATCACTATTCTCCTTCAAGATGACGTGGCAGGCTTGCAGGTTCTCAACAATGGCAAATGGGTGGCTGTCAAACCCATCCCACATACTTTCATTGTCAACATTGCTGATCAAATCCAGGTTCTTAGCAATGATCGTTACAAGAGTGTACTCCATCGGGCGGTGGTGAATTGCAACAAAGAAAGGATGTCCATCCCGACATTCTATTGCCCATCGTACGATGCTGTGATGGAACCAGCCCCACAACTGATTGATGATCGATCATCCTCCCCTCTACAGGAGCTTCACTTATGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

319

Amino Acids

35.97

Weight (kDa)

5.48

Isoelectric Point (pI)

55.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10490 AT4G10500
fragaria_vesca	FvH4_5g10430 FvH4_7g17840
malus_domestica	MD01G1090000.v1.1 MD06G1124100.v1.1 MD14G1140400.v1.1 MD14G1140700.v1.1 MD14G1141000.v1.1 MD14G1141200.v1.1
prunus_persica	Prupe.2G199700_v2.0.a1 Prupe.2G200200_v2.0.a1 Prupe.2G200200_v2.0.a1 Prupe.2G200200_v2.0.a1 Prupe.5G134500_v2.0.a1 Prupe.5G134700_v2.0.a1
pyrus_communis	pycom01g11450 pycom06g11450 pycom14g11590
rosa_chinensis	RchiOBHm_Chr1g0361261 RchiOBHm_Chr7g0187801
rosa_laevigata	RLG00000004755 RLG00000027730
rosa_multiflora	Rmu_sc0002119.1_g000038 Rmu_sc0004483.1_g000038
rosa_roxburghii	Rroxscaffold_3G00267060 Rroxscaffold_4G00295120
rosa_rugosa	Rorug01G0287700 Rorug01G0287700 Rorug02G0186700 Rorug06G0484300
rosa_samantha	Rh1AG299000 Rh1BG262900 Rh1CG280300 Rh1DG292900 Rh7CG090300 Rh7DG091900
rosa_wichuraiana	Rw1G026450 Rw7G007720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	691
AccI	GTMKAC	1 cut(s)	341
AciI	CCGC	1 cut(s)	821
AclWI	GGATC	4 cut(s)	140, 153, 311, 647
AcoI	YGGCCR	1 cut(s)	434
AfaI	GTAC	2 cut(s)	810, 878
AfiI	CCNNNNNNNGG	3 cut(s)	415, 820, 937
AflII	CTTAAG	1 cut(s)	391
AgsI	TTSAA	3 cut(s)	230, 352, 680
AhdI	GACNNNNNGTC	1 cut(s)	25
AjiI	CACGTC	1 cut(s)	688
AjnI	CCWGG	3 cut(s)	90, 640, 777
AluBI	AGCT	4 cut(s)	378, 531, 625, 943
AluI	AGCT	4 cut(s)	378, 531, 625, 943
Alw21I	GWGCWC	1 cut(s)	627
Alw26I	GTCTC	3 cut(s)	376, 378, 499
AlwI	GGATC	4 cut(s)	140, 153, 311, 647
AoxI	GGCC	5 cut(s)	136, 178, 234, 434, 634
AspA2I	CCTAGG	1 cut(s)	149
AspLEI	GCGC	1 cut(s)	156
AspS9I	GGNCC	2 cut(s)	94, 211
AsuHPI	GGTGA	2 cut(s)	619, 838
AvaII	GGWCC	2 cut(s)	94, 211
AvrII	CCTAGG	1 cut(s)	149
BamHI	GGATCC	1 cut(s)	145
BanII	GRGCYC	1 cut(s)	627
BauI	CACGAG	1 cut(s)	331
Bbv12I	GWGCWC	1 cut(s)	627
BbvCI	CCTCAGC	1 cut(s)	615
BccI	CCATC	6 cut(s)	457, 746, 822, 860, 880, 883
BceAI	ACGGC	2 cut(s)	221, 421
BciT130I	CCWGG	3 cut(s)	92, 642, 779
BclI	TGATCA	1 cut(s)	769
BcoDI	GTCTC	3 cut(s)	376, 378, 499
BfaI	CTAG	1 cut(s)	150
BfmI	CTRYAG	1 cut(s)	935
BfoI	RGCGCY	1 cut(s)	157
BfrI	CTTAAG	1 cut(s)	391
BfuAI	ACCTGC	1 cut(s)	691
BlnI	CCTAGG	1 cut(s)	149
Bme1390I	CCNGG	3 cut(s)	92, 642, 779
Bme18I	GGWCC	2 cut(s)	94, 211
BmeRI	GACNNNNNGTC	1 cut(s)	25
BmgBI	CACGTC	1 cut(s)	688
BmgT120I	GGNCC	2 cut(s)	94, 211
BmiI	GGNNCC	3 cut(s)	147, 398, 894
BmrFI	CCNGG	3 cut(s)	92, 642, 779
BmrI	ACTGGG	1 cut(s)	575
BmsI	GCATC	1 cut(s)	871
BmuI	ACTGGG	1 cut(s)	575
BplI	GAGNNNNNCTC	2 cut(s)	356, 388
BpmI	CTGGAG	2 cut(s)	358, 400
Bpu10I	CCTNAGC	2 cut(s)	532, 615
BpuEI	CTTGAG	1 cut(s)	161
Bsa29I	ATCGAT	2 cut(s)	243, 919
BsaBI	GATNNNNATC	1 cut(s)	851
BsaI	GGTCTC	1 cut(s)	376
BsaJI	CCNNGG	3 cut(s)	133, 149, 220
Bsc4I	CCNNNNNNNGG	3 cut(s)	415, 820, 937
Bse118I	RCCGGY	1 cut(s)	64
Bse1I	ACTGG	2 cut(s)	97, 570
Bse3DI	GCAATG	2 cut(s)	762, 796
Bse8I	GATNNNNATC	1 cut(s)	851
BseBI	CCWGG	3 cut(s)	92, 642, 779
BseCI	ATCGAT	2 cut(s)	243, 919
BseDI	CCNNGG	3 cut(s)	133, 149, 220
BseGI	GGATG	4 cut(s)	738, 852, 852, 923
BseJI	GATNNNNATC	1 cut(s)	851
BseLI	CCNNNNNNNGG	3 cut(s)	415, 820, 937
BseMI	GCAATG	2 cut(s)	762, 796
BseMII	CTCAG	4 cut(s)	245, 354, 462, 629
BseNI	ACTGG	2 cut(s)	97, 570
BseRI	GAGGAG	1 cut(s)	380
Bsh1285I	CGRYCG	2 cut(s)	65, 76
BshFI	GGCC	5 cut(s)	138, 180, 236, 436, 636
BshVI	ATCGAT	2 cut(s)	243, 919
BsiEI	CGRYCG	2 cut(s)	65, 76
BsiHKAI	GWGCWC	1 cut(s)	627
BsiSI	CCGG	1 cut(s)	65
BsiWI	CGTACG	1 cut(s)	876
BslI	CCNNNNNNNGG	3 cut(s)	415, 820, 937
BsmAI	GTCTC	3 cut(s)	376, 378, 499
BsnI	GGCC	5 cut(s)	138, 180, 236, 436, 636
Bso31I	GGTCTC	1 cut(s)	376
Bsp1286I	GDGCHC	1 cut(s)	627
Bsp19I	CCATGG	1 cut(s)	220
BspACI	CCGC	1 cut(s)	821
BspANI	GGCC	5 cut(s)	138, 180, 236, 436, 636
BspCNI	CTCAG	4 cut(s)	246, 355, 463, 628
BspDI	ATCGAT	2 cut(s)	243, 919
BspLI	GGNNCC	3 cut(s)	147, 398, 894
BspMI	ACCTGC	1 cut(s)	691
BspPI	GGATC	4 cut(s)	140, 153, 311, 647
BspTI	CTTAAG	1 cut(s)	391
BspTNI	GGTCTC	1 cut(s)	376
BsrDI	GCAATG	2 cut(s)	762, 796
BsrFI	RCCGGY	1 cut(s)	64
BsrI	ACTGG	2 cut(s)	97, 570
BssAI	RCCGGY	1 cut(s)	64
BssECI	CCNNGG	3 cut(s)	133, 149, 220
BssSI	CACGAG	1 cut(s)	331
BssT1I	CCWWGG	3 cut(s)	133, 149, 220
Bst2BI	CACGAG	1 cut(s)	331
Bst2UI	CCWGG	3 cut(s)	92, 642, 779
Bst4CI	ACNGT	2 cut(s)	12, 200
Bst6I	CTCTTC	1 cut(s)	225
BstAFI	CTTAAG	1 cut(s)	391
BstC8I	GCNNGC	3 cut(s)	187, 694, 698
BstDEI	CTNAG	6 cut(s)	254, 363, 471, 532, 615, 785
BstDSI	CCRYGG	1 cut(s)	220
BstF5I	GGATG	4 cut(s)	738, 852, 852, 923
BstH2I	RGCGCY	1 cut(s)	157
BstHHI	GCGC	1 cut(s)	156
BstMAI	GTCTC	3 cut(s)	376, 378, 499
BstMCI	CGRYCG	2 cut(s)	65, 76
BstMWI	GCNNNNNNNGC	3 cut(s)	186, 433, 580
BstNI	CCWGG	3 cut(s)	92, 642, 779
BstNSI	RCATGY	2 cut(s)	253, 427
BstSCI	CCNGG	3 cut(s)	90, 640, 777
BstSFI	CTRYAG	1 cut(s)	935
BstX2I	RGATCY	1 cut(s)	145
BstXI	CCANNNNNNTGG	1 cut(s)	221
BstYI	RGATCY	1 cut(s)	145
Bsu15I	ATCGAT	2 cut(s)	243, 919
BsuRI	GGCC	5 cut(s)	138, 180, 236, 436, 636
BsuTUI	ATCGAT	2 cut(s)	243, 919
BtgI	CCRYGG	1 cut(s)	220
BtrI	CACGTC	1 cut(s)	688
BtsCI	GGATG	4 cut(s)	738, 852, 852, 923
BtsI	GCAGTG	2 cut(s)	400, 507
BtsIMutI	CAGTG	4 cut(s)	8, 400, 507, 563
BveI	ACCTGC	1 cut(s)	691
Cac8I	GCNNGC	3 cut(s)	187, 694, 698
CfoI	GCGC	1 cut(s)	156
Cfr10I	RCCGGY	1 cut(s)	64
Cfr13I	GGNCC	2 cut(s)	94, 211
ClaI	ATCGAT	2 cut(s)	243, 919
CsiI	ACCWGGT	2 cut(s)	90, 640
Csp6I	GTAC	2 cut(s)	809, 877
CviAII	CATG	9 cut(s)	41, 221, 250, 424, 428, 553, 575, 586, 647
CviQI	GTAC	2 cut(s)	809, 877
DdeI	CTNAG	6 cut(s)	254, 363, 471, 532, 615, 785
DriI	GACNNNNNGTC	1 cut(s)	25
EaeI	YGGCCR	1 cut(s)	434
Eam1104I	CTCTTC	1 cut(s)	225
Eam1105I	GACNNNNNGTC	1 cut(s)	25
EarI	CTCTTC	1 cut(s)	225
Ecl136II	GAGCTC	1 cut(s)	625
Eco130I	CCWWGG	3 cut(s)	133, 149, 220
Eco147I	AGGCCT	2 cut(s)	138, 180
Eco24I	GRGCYC	1 cut(s)	627
Eco31I	GGTCTC	1 cut(s)	376
Eco47I	GGWCC	2 cut(s)	94, 211
Eco53kI	GAGCTC	1 cut(s)	625
EcoICRI	GAGCTC	1 cut(s)	625
EcoRII	CCWGG	3 cut(s)	90, 640, 777
EcoT14I	CCWWGG	3 cut(s)	133, 149, 220
EcoT22I	ATGCAT	1 cut(s)	429
EcoT38I	GRGCYC	1 cut(s)	627
ErhI	CCWWGG	3 cut(s)	133, 149, 220
FaeI	CATG	9 cut(s)	44, 224, 253, 427, 431, 556, 578, 589, 650
FatI	CATG	9 cut(s)	40, 220, 249, 423, 427, 552, 574, 585, 646
FbaI	TGATCA	1 cut(s)	769
FblI	GTMKAC	1 cut(s)	341
FokI	GGATG	4 cut(s)	725, 839, 859, 910
FriOI	GRGCYC	1 cut(s)	627
FspBI	CTAG	1 cut(s)	150
GlaI	GCGC	1 cut(s)	155
GsuI	CTGGAG	2 cut(s)	358, 400
HaeII	RGCGCY	1 cut(s)	157
HaeIII	GGCC	5 cut(s)	138, 180, 236, 436, 636
HapII	CCGG	1 cut(s)	65
HhaI	GCGC	1 cut(s)	156
Hin1II	CATG	9 cut(s)	44, 224, 253, 427, 431, 556, 578, 589, 650
Hin6I	GCGC	1 cut(s)	154
HinP1I	GCGC	1 cut(s)	154
HincII	GTYRAC	2 cut(s)	342, 760
HindII	GTYRAC	2 cut(s)	342, 760
HindIII	AAGCTT	1 cut(s)	529
HinfI	GANTC	2 cut(s)	82, 515
HpaII	CCGG	1 cut(s)	65
HphI	GGTGA	2 cut(s)	619, 838
Hpy166II	GTNNAC	3 cut(s)	342, 760, 809
Hpy188I	TCNGA	9 cut(s)	19, 62, 81, 106, 160, 313, 458, 526, 606
Hpy188III	TCNNGA	3 cut(s)	86, 680, 856
Hpy8I	GTNNAC	3 cut(s)	342, 760, 809
Hpy99I	CGWCG	1 cut(s)	346
HpyAV	CCTTC	2 cut(s)	536, 686
HpyCH4III	ACNGT	2 cut(s)	12, 200
HpyCH4IV	ACGT	1 cut(s)	687
HpyCH4V	TGCA	5 cut(s)	35, 427, 480, 700, 834
HpyF10VI	GCNNNNNNNGC	3 cut(s)	186, 433, 580
HpyF3I	CTNAG	6 cut(s)	254, 363, 471, 532, 615, 785
HpySE526I	ACGT	1 cut(s)	687
Hsp92II	CATG	9 cut(s)	44, 224, 253, 427, 431, 556, 578, 589, 650
HspAI	GCGC	1 cut(s)	154
Ksp22I	TGATCA	1 cut(s)	769
LmnI	GCTCC	2 cut(s)	402, 940
LweI	GCATC	1 cut(s)	871
MabI	ACCWGGT	2 cut(s)	90, 640
MaeI	CTAG	1 cut(s)	150
MaeII	ACGT	1 cut(s)	687
MaeIII	GTNAC	1 cut(s)	797
MboII	GAAGA	2 cut(s)	242, 473
MflI	RGATCY	1 cut(s)	145
MhlI	GDGCHC	1 cut(s)	627
MluCI	AATT	3 cut(s)	225, 595, 829
MmeI	TCCRAC	4 cut(s)	42, 85, 465, 629
Mph1103I	ATGCAT	1 cut(s)	429
MseI	TTAA	3 cut(s)	299, 324, 392
MspA1I	CMGCKG	1 cut(s)	378
MspCI	CTTAAG	1 cut(s)	391
MspI	CCGG	1 cut(s)	65
MspR9I	CCNGG	3 cut(s)	92, 642, 779
MvaI	CCWGG	3 cut(s)	92, 642, 779
MwoI	GCNNNNNNNGC	3 cut(s)	186, 433, 580
NcoI	CCATGG	1 cut(s)	220
NlaIII	CATG	9 cut(s)	44, 224, 253, 427, 431, 556, 578, 589, 650
NlaIV	GGNNCC	3 cut(s)	147, 398, 894
NmeAIII	GCCGAG	1 cut(s)	215
NsiI	ATGCAT	1 cut(s)	429
NspI	RCATGY	2 cut(s)	253, 427
PceI	AGGCCT	2 cut(s)	138, 180
PcsI	WCGNNNNNNNCGW	1 cut(s)	338
PfeI	GAWTC	2 cut(s)	82, 515
Pfl23II	CGTACG	1 cut(s)	876
PflFI	GACNNNGTC	1 cut(s)	92
Ple19I	CGATCG	1 cut(s)	76
Psp124BI	GAGCTC	1 cut(s)	627
Psp6I	CCWGG	3 cut(s)	90, 640, 777
PspGI	CCWGG	3 cut(s)	90, 640, 777
PspLI	CGTACG	1 cut(s)	876
PspN4I	GGNNCC	3 cut(s)	147, 398, 894
PspPI	GGNCC	2 cut(s)	94, 211
PsuI	RGATCY	1 cut(s)	145
PsyI	GACNNNGTC	1 cut(s)	92
PvuI	CGATCG	1 cut(s)	76
PvuII	CAGCTG	1 cut(s)	378
RsaI	GTAC	2 cut(s)	810, 878
RsaNI	GTAC	2 cut(s)	809, 877
SacI	GAGCTC	1 cut(s)	627
SalI	GTCGAC	1 cut(s)	340
SaqAI	TTAA	3 cut(s)	299, 324, 392
Sau96I	GGNCC	2 cut(s)	94, 211
ScrFI	CCNGG	3 cut(s)	92, 642, 779
SduI	GDGCHC	1 cut(s)	627
SexAI	ACCWGGT	2 cut(s)	90, 640
SfaNI	GCATC	1 cut(s)	871
SfcI	CTRYAG	1 cut(s)	935
SinI	GGWCC	2 cut(s)	94, 211
SmlI	CTYRAG	2 cut(s)	140, 391
SmoI	CTYRAG	2 cut(s)	140, 391
Sse9I	AATT	3 cut(s)	225, 595, 829
SseBI	AGGCCT	2 cut(s)	138, 180
SsiI	CCGC	1 cut(s)	821
SspMI	CTAG	1 cut(s)	150
SstI	GAGCTC	1 cut(s)	627
StuI	AGGCCT	2 cut(s)	138, 180
StyD4I	CCNGG	3 cut(s)	90, 640, 777
StyI	CCWWGG	3 cut(s)	133, 149, 220
TaaI	ACNGT	2 cut(s)	12, 200
TaiI	ACGT	1 cut(s)	690
TaqI	TCGA	5 cut(s)	87, 243, 341, 513, 919
TasI	AATT	3 cut(s)	225, 595, 829
TatI	WGTACW	1 cut(s)	808
TfiI	GAWTC	2 cut(s)	82, 515
Tru1I	TTAA	3 cut(s)	299, 324, 392
Tru9I	TTAA	3 cut(s)	299, 324, 392
TscAI	CASTG	4 cut(s)	15, 407, 507, 570
TspDTI	ATGAA	3 cut(s)	444, 569, 742
TspRI	CASTG	4 cut(s)	15, 407, 507, 570
Tth111I	GACNNNGTC	1 cut(s)	92
Vha464I	CTTAAG	1 cut(s)	391
VpaK11BI	GGWCC	2 cut(s)	94, 211
XceI	RCATGY	2 cut(s)	253, 427
XmaJI	CCTAGG	1 cut(s)	149
XmiI	GTMKAC	1 cut(s)	341
XspI	CTAG	1 cut(s)	150
Zsp2I	ATGCAT	1 cut(s)	429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.