Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0002796

Physical Location & Seq

Genomic Coordinates Forward (+)

15038160 .. 15044300

Gene Structure 6141 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00295120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGGCACCTCCAAATTCAGCACTCATATCCGACCTTGTATCTGGTGCAACCCATGTTCCTTCTCAATTCGTCCGACCCGAACATGATCGTCCCAATCTTGACCAGGTTAAAAACCATGGAATTAACGAGGCAGTGATCGATAACTTGTTGGCTGTGGCAAAGGAGTTTTTCCATTTGCCAGAGAGTGAAAGGATGAAGGTTTACTCTGAAGACCCTTATAAGACAATAAGACTGTCGACTAGCTTCAATGTCAGAGTTGAGGAAGTATCCTGCTGGAGAGATTACCTAAGACTCCACTGCCACCCTCTAGAGGATTACATTCATGAGTGGCCAGCCAACCCTCCCTCTTTCAGACTACATCAACAAGGCCCTAGCAAAGCATGGGCAGACATGGCGATCAATTACTATCCGCCATGCCCTCAGCCAGAGCTGACCTACGGCTTACCTGGGCATGCTGACCCGAACGTCGTCACCCTCCTCCTCCAGGACGACGTGGGAGGCTTGCAGGTTCTCAAGGGCGGGAAATGGGTTGCTGTCAAGCCCATTCCTCACACCTTCATCGTCAACCTCGGCGACCAAATGCAGGTTTTGAGCAATGATCGCTATAAGAGTATACTCCACCGCGCGGTGGTGAATAGCGACAAGGAAAGGATCTCCATCCCAACATTCTATTGCCCATCATACGATGCTGTGATCAAACCTGCCAGGAAACTGGTTGATGATGATCATCCGGCCCTCTACCGGAGCTTCACTTACGGTGAATTCTACGGGAATTTCTGGGACAAGGGCATTGATAAGAAATCTGGAACCAGTTTGGGCACGTATCTTATAACTATTTATACATTTAACTATGACCACAACGAAAACTGTATTGACGGCGGCGCTGCTCTTGCCGGACTGAGACCAGGCCTCTATCTTGAGCTTCTTCTTGCTGATGGACTCGCTGGCTACCAGTTTGCAGTTGGCCTTGATTGGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

326

Amino Acids

36.7

Weight (kDa)

5.68

Isoelectric Point (pI)

30.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	35 - 112	3.1e-15	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	131 - 226	1.1e-37	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10490 AT4G10500
fragaria_vesca	FvH4_5g10430 FvH4_7g17840
malus_domestica	MD01G1090000.v1.1 MD06G1124100.v1.1 MD14G1140400.v1.1 MD14G1140700.v1.1 MD14G1141000.v1.1 MD14G1141200.v1.1
prunus_persica	Prupe.2G199700_v2.0.a1 Prupe.2G200200_v2.0.a1 Prupe.2G200200_v2.0.a1 Prupe.2G200200_v2.0.a1 Prupe.5G134500_v2.0.a1 Prupe.5G134700_v2.0.a1
pyrus_communis	pycom01g11450 pycom06g11450 pycom14g11590
rosa_chinensis	RchiOBHm_Chr1g0361261 RchiOBHm_Chr7g0187801
rosa_laevigata	RLG00000004755 RLG00000027730
rosa_multiflora	Rmu_sc0002119.1_g000038 Rmu_sc0004483.1_g000038
rosa_roxburghii	Rroxscaffold_3G00267060 Rroxscaffold_4G00295120
rosa_rugosa	Rorug01G0287700 Rorug01G0287700 Rorug02G0186700 Rorug06G0484300
rosa_samantha	Rh1AG299000 Rh1BG262900 Rh1CG280300 Rh1DG292900 Rh7CG090300 Rh7DG091900
rosa_wichuraiana	Rw1G026450 Rw7G007720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	219, 830
AasI	GACNNNNNNGTC	1 cut(s)	464
Acc36I	ACCTGC	3 cut(s)	496, 574, 709
AccB1I	GGYRCC	1 cut(s)	4
AccI	GTMKAC	2 cut(s)	236, 613
AccII	CGCG	2 cut(s)	624, 626
AciI	CCGC	5 cut(s)	410, 519, 622, 626, 879
AclWI	GGATC	1 cut(s)	659
AcoI	YGGCCR	1 cut(s)	329
AcsI	RAATTY	3 cut(s)	13, 761, 772
AcuI	CTGAAG	1 cut(s)	228
AfiI	CCNNNNNNNGG	7 cut(s)	310, 484, 583, 625, 628, 741, 973
AgsI	TTSAA	1 cut(s)	247
AjiI	CACGTC	1 cut(s)	493
AjnI	CCWGG	5 cut(s)	102, 445, 483, 704, 904
AluBI	AGCT	4 cut(s)	243, 430, 747, 922
AluI	AGCT	4 cut(s)	243, 430, 747, 922
Alw26I	GTCTC	1 cut(s)	895
AlwI	GGATC	1 cut(s)	659
AoxI	GGCC	5 cut(s)	329, 367, 732, 907, 964
ApeKI	GCWGC	1 cut(s)	884
ApoI	RAATTY	3 cut(s)	13, 761, 772
AspLEI	GCGC	2 cut(s)	626, 884
AspS9I	GGNCC	2 cut(s)	368, 733
AsuHPI	GGTGA	3 cut(s)	463, 643, 770
BaeGI	GKGCMC	1 cut(s)	821
BalI	TGGCCA	1 cut(s)	331
BanI	GGYRCC	1 cut(s)	4
BbsI	GAAGAC	1 cut(s)	216
BbvCI	CCTCAGC	1 cut(s)	420
BbvI	GCAGC	1 cut(s)	871
BccI	CCATC	3 cut(s)	665, 685, 929
BceAI	ACGGC	2 cut(s)	454, 892
BciT130I	CCWGG	5 cut(s)	104, 447, 485, 706, 906
BciVI	GTATCC	1 cut(s)	277
BclI	TGATCA	2 cut(s)	693, 724
BcoDI	GTCTC	1 cut(s)	895
BfaI	CTAG	3 cut(s)	240, 308, 372
BfoI	RGCGCY	1 cut(s)	885
BfuAI	ACCTGC	3 cut(s)	496, 574, 709
BfuI	GTATCC	1 cut(s)	277
BisI	GCNGC	2 cut(s)	880, 885
BlsI	GCNGC	2 cut(s)	881, 886
Bme1390I	CCNGG	5 cut(s)	104, 447, 485, 706, 906
BmgBI	CACGTC	1 cut(s)	493
BmgT120I	GGNCC	2 cut(s)	368, 733
BmiI	GGNNCC	2 cut(s)	6, 808
BmrFI	CCNGG	5 cut(s)	104, 447, 485, 706, 906
BmsI	GCATC	1 cut(s)	676
BpiI	GAAGAC	1 cut(s)	216
BpmI	CTGGAG	2 cut(s)	295, 467
Bpu10I	CCTNAGC	1 cut(s)	420
BpuEI	CTTGAG	2 cut(s)	497, 938
Bsa29I	ATCGAT	1 cut(s)	138
BsaAI	YACGTR	1 cut(s)	822
BsaBI	GATNNNNATC	3 cut(s)	656, 723, 726
BsaI	GGTCTC	1 cut(s)	895
BsaJI	CCNNGG	3 cut(s)	115, 446, 568
BsaWI	WCCGGW	1 cut(s)	741
Bsc4I	CCNNNNNNNGG	7 cut(s)	310, 484, 583, 625, 628, 741, 973
Bse1I	ACTGG	3 cut(s)	717, 810, 952
Bse3DI	GCAATG	1 cut(s)	601
Bse8I	GATNNNNATC	3 cut(s)	656, 723, 726
BseBI	CCWGG	5 cut(s)	104, 447, 485, 706, 906
BseCI	ATCGAT	1 cut(s)	138
BseDI	CCNNGG	3 cut(s)	115, 446, 568
BseGI	GGATG	3 cut(s)	198, 657, 727
BseJI	GATNNNNATC	3 cut(s)	656, 723, 726
BseLI	CCNNNNNNNGG	7 cut(s)	310, 484, 583, 625, 628, 741, 973
BseMI	GCAATG	1 cut(s)	601
BseMII	CTCAG	2 cut(s)	434, 890
BseNI	ACTGG	3 cut(s)	717, 810, 952
BseRI	GAGGAG	2 cut(s)	467, 470
BseSI	GKGCMC	1 cut(s)	821
BseXI	GCAGC	1 cut(s)	871
Bsh1236I	CGCG	2 cut(s)	624, 626
BshFI	GGCC	5 cut(s)	331, 369, 734, 909, 966
BshNI	GGYRCC	1 cut(s)	4
BshVI	ATCGAT	1 cut(s)	138
BsiSI	CCGG	3 cut(s)	731, 742, 894
BslFI	GGGAC	2 cut(s)	75, 794
BslI	CCNNNNNNNGG	7 cut(s)	310, 484, 583, 625, 628, 741, 973
BsmAI	GTCTC	1 cut(s)	895
BsmFI	GGGAC	2 cut(s)	75, 794
BsnI	GGCC	5 cut(s)	331, 369, 734, 909, 966
Bso31I	GGTCTC	1 cut(s)	895
Bsp1286I	GDGCHC	1 cut(s)	821
Bsp143I	GATC	7 cut(s)	85, 135, 396, 598, 651, 693, 724
Bsp19I	CCATGG	1 cut(s)	115
BspACI	CCGC	5 cut(s)	410, 519, 622, 626, 879
BspANI	GGCC	5 cut(s)	331, 369, 734, 909, 966
BspCNI	CTCAG	2 cut(s)	433, 891
BspDI	ATCGAT	1 cut(s)	138
BspFNI	CGCG	2 cut(s)	624, 626
BspHI	TCATGA	1 cut(s)	322
BspLI	GGNNCC	2 cut(s)	6, 808
BspMI	ACCTGC	3 cut(s)	496, 574, 709
BspPI	GGATC	1 cut(s)	659
BspT107I	GGYRCC	1 cut(s)	4
BspTNI	GGTCTC	1 cut(s)	895
BsrDI	GCAATG	1 cut(s)	601
BsrI	ACTGG	3 cut(s)	717, 810, 952
BssECI	CCNNGG	3 cut(s)	115, 446, 568
BssMI	GATC	7 cut(s)	85, 135, 396, 598, 651, 693, 724
BssNAI	GTATAC	1 cut(s)	614
BssT1I	CCWWGG	1 cut(s)	115
Bst1107I	GTATAC	1 cut(s)	614
Bst2UI	CCWGG	5 cut(s)	104, 447, 485, 706, 906
Bst4CI	ACNGT	3 cut(s)	234, 758, 869
BstBAI	YACGTR	1 cut(s)	822
BstC8I	GCNNGC	4 cut(s)	333, 453, 503, 946
BstDEI	CTNAG	3 cut(s)	287, 420, 899
BstDSI	CCRYGG	1 cut(s)	115
BstENI	CCTNNNNNAGG	1 cut(s)	482
BstF5I	GGATG	3 cut(s)	198, 657, 727
BstFNI	CGCG	2 cut(s)	624, 626
BstH2I	RGCGCY	1 cut(s)	885
BstHHI	GCGC	2 cut(s)	626, 884
BstKTI	GATC	7 cut(s)	88, 138, 399, 601, 654, 696, 727
BstMAI	GTCTC	1 cut(s)	895
BstMBI	GATC	7 cut(s)	85, 135, 396, 598, 651, 693, 724
BstMWI	GCNNNNNNNGC	3 cut(s)	392, 600, 890
BstNI	CCWGG	5 cut(s)	104, 447, 485, 706, 906
BstNSI	RCATGY	1 cut(s)	455
BstSCI	CCNGG	5 cut(s)	102, 445, 483, 704, 904
BstSLI	GKGCMC	1 cut(s)	821
BstUI	CGCG	2 cut(s)	624, 626
BstV1I	GCAGC	1 cut(s)	871
BstV2I	GAAGAC	1 cut(s)	216
BstX2I	RGATCY	1 cut(s)	651
BstXI	CCANNNNNNTGG	1 cut(s)	712
BstYI	RGATCY	1 cut(s)	651
BstZ17I	GTATAC	1 cut(s)	614
Bsu15I	ATCGAT	1 cut(s)	138
BsuI	GTATCC	1 cut(s)	277
BsuRI	GGCC	5 cut(s)	331, 369, 734, 909, 966
BsuTUI	ATCGAT	1 cut(s)	138
BtgI	CCRYGG	1 cut(s)	115
BtrI	CACGTC	1 cut(s)	493
BtsCI	GGATG	3 cut(s)	198, 657, 727
BtsI	GCAGTG	2 cut(s)	138, 295
BtsIMutI	CAGTG	2 cut(s)	138, 295
BveI	ACCTGC	3 cut(s)	496, 574, 709
Cac8I	GCNNGC	4 cut(s)	333, 453, 503, 946
CciI	TCATGA	1 cut(s)	322
CfoI	GCGC	2 cut(s)	626, 884
Cfr13I	GGNCC	2 cut(s)	368, 733
ClaI	ATCGAT	1 cut(s)	138
CsiI	ACCWGGT	1 cut(s)	102
CviAII	CATG	8 cut(s)	53, 83, 116, 323, 381, 391, 414, 452
DdeI	CTNAG	3 cut(s)	287, 420, 899
DpnI	GATC	7 cut(s)	87, 137, 398, 600, 653, 695, 726
DpnII	GATC	7 cut(s)	85, 135, 396, 598, 651, 693, 724
DrdI	GACNNNNNNGTC	1 cut(s)	464
DseDI	GACNNNNNNGTC	1 cut(s)	464
EaeI	YGGCCR	1 cut(s)	329
EciI	GGCGGA	1 cut(s)	399
Eco130I	CCWWGG	1 cut(s)	115
Eco147I	AGGCCT	1 cut(s)	909
Eco31I	GGTCTC	1 cut(s)	895
Eco57I	CTGAAG	1 cut(s)	228
EcoNI	CCTNNNNNAGG	1 cut(s)	482
EcoO109I	RGGNCCY	1 cut(s)	368
EcoRI	GAATTC	1 cut(s)	761
EcoRII	CCWGG	5 cut(s)	102, 445, 483, 704, 904
EcoT14I	CCWWGG	1 cut(s)	115
ErhI	CCWWGG	1 cut(s)	115
FaeI	CATG	8 cut(s)	56, 86, 119, 326, 384, 394, 417, 455
FaqI	GGGAC	2 cut(s)	75, 794
FatI	CATG	8 cut(s)	52, 82, 115, 322, 380, 390, 413, 451
FauI	CCCGC	1 cut(s)	512
FbaI	TGATCA	2 cut(s)	693, 724
FblI	GTMKAC	2 cut(s)	236, 613
Fnu4HI	GCNGC	2 cut(s)	880, 885
FokI	GGATG	3 cut(s)	205, 644, 714
Fsp4HI	GCNGC	2 cut(s)	880, 885
FspBI	CTAG	3 cut(s)	240, 308, 372
GlaI	GCGC	2 cut(s)	625, 883
GluI	GCNGC	2 cut(s)	880, 885
GsuI	CTGGAG	2 cut(s)	295, 467
HaeII	RGCGCY	1 cut(s)	885
HaeIII	GGCC	5 cut(s)	331, 369, 734, 909, 966
HapII	CCGG	3 cut(s)	731, 742, 894
HhaI	GCGC	2 cut(s)	626, 884
Hin1II	CATG	8 cut(s)	56, 86, 119, 326, 384, 394, 417, 455
Hin6I	GCGC	2 cut(s)	624, 882
HinP1I	GCGC	2 cut(s)	624, 882
HincII	GTYRAC	2 cut(s)	237, 565
HindII	GTYRAC	2 cut(s)	237, 565
HinfI	GANTC	2 cut(s)	291, 939
HpaII	CCGG	3 cut(s)	731, 742, 894
HphI	GGTGA	3 cut(s)	463, 643, 770
Hpy166II	GTNNAC	4 cut(s)	202, 237, 565, 614
Hpy188I	TCNGA	5 cut(s)	31, 74, 208, 254, 353
Hpy188III	TCNNGA	5 cut(s)	98, 308, 323, 804, 917
Hpy8I	GTNNAC	4 cut(s)	202, 237, 565, 614
Hpy99I	CGWCG	2 cut(s)	470, 494
HpyAV	CCTTC	3 cut(s)	69, 190, 565
HpyCH4III	ACNGT	3 cut(s)	234, 758, 869
HpyCH4IV	ACGT	3 cut(s)	465, 492, 821
HpyCH4V	TGCA	4 cut(s)	47, 505, 583, 959
HpyF10VI	GCNNNNNNNGC	3 cut(s)	392, 600, 890
HpyF3I	CTNAG	3 cut(s)	287, 420, 899
HpySE526I	ACGT	3 cut(s)	465, 492, 821
Hsp92II	CATG	8 cut(s)	56, 86, 119, 326, 384, 394, 417, 455
HspAI	GCGC	2 cut(s)	624, 882
Ksp22I	TGATCA	2 cut(s)	693, 724
Kzo9I	GATC	7 cut(s)	85, 135, 396, 598, 651, 693, 724
LmnI	GCTCC	1 cut(s)	744
Lsp1109I	GCAGC	1 cut(s)	871
LweI	GCATC	1 cut(s)	676
MabI	ACCWGGT	1 cut(s)	102
MaeI	CTAG	3 cut(s)	240, 308, 372
MaeII	ACGT	3 cut(s)	465, 492, 821
MaeIII	GTNAC	1 cut(s)	469
MalI	GATC	7 cut(s)	87, 137, 398, 600, 653, 695, 726
MboI	GATC	7 cut(s)	85, 135, 396, 598, 651, 693, 724
MboII	GAAGA	2 cut(s)	221, 917
MflI	RGATCY	1 cut(s)	651
MhlI	GDGCHC	1 cut(s)	821
MlsI	TGGCCA	1 cut(s)	331
MluCI	AATT	6 cut(s)	13, 65, 120, 400, 761, 772
MluNI	TGGCCA	1 cut(s)	331
MlyI	GAGTC	2 cut(s)	285, 933
MmeI	TCCRAC	2 cut(s)	54, 97
Mox20I	TGGCCA	1 cut(s)	331
MscI	TGGCCA	1 cut(s)	331
MseI	TTAA	3 cut(s)	108, 123, 846
Msp20I	TGGCCA	1 cut(s)	331
MspI	CCGG	3 cut(s)	731, 742, 894
MspR9I	CCNGG	5 cut(s)	104, 447, 485, 706, 906
MvaI	CCWGG	5 cut(s)	104, 447, 485, 706, 906
MvnI	CGCG	2 cut(s)	624, 626
MwoI	GCNNNNNNNGC	3 cut(s)	392, 600, 890
NcoI	CCATGG	1 cut(s)	115
NdeII	GATC	7 cut(s)	85, 135, 396, 598, 651, 693, 724
NlaIII	CATG	8 cut(s)	56, 86, 119, 326, 384, 394, 417, 455
NlaIV	GGNNCC	2 cut(s)	6, 808
NmeAIII	GCCGAG	1 cut(s)	549
NmuCI	GTSAC	1 cut(s)	469
NspI	RCATGY	1 cut(s)	455
PaeI	GCATGC	1 cut(s)	455
PagI	TCATGA	1 cut(s)	322
PceI	AGGCCT	1 cut(s)	909
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PfoI	TCCNGGA	1 cut(s)	483
PkrI	GCNGC	2 cut(s)	881, 886
PleI	GAGTC	2 cut(s)	285, 933
PpsI	GAGTC	2 cut(s)	285, 933
Ppu21I	YACGTR	1 cut(s)	822
PsiI	TTATAA	2 cut(s)	219, 830
Psp6I	CCWGG	5 cut(s)	102, 445, 483, 704, 904
PspGI	CCWGG	5 cut(s)	102, 445, 483, 704, 904
PspN4I	GGNNCC	2 cut(s)	6, 808
PspPI	GGNCC	2 cut(s)	368, 733
PsuI	RGATCY	1 cut(s)	651
SalI	GTCGAC	1 cut(s)	235
SaqAI	TTAA	3 cut(s)	108, 123, 846
SatI	GCNGC	2 cut(s)	880, 885
Sau3AI	GATC	7 cut(s)	85, 135, 396, 598, 651, 693, 724
Sau96I	GGNCC	2 cut(s)	368, 733
SchI	GAGTC	2 cut(s)	285, 933
ScrFI	CCNGG	5 cut(s)	104, 447, 485, 706, 906
SduI	GDGCHC	1 cut(s)	821
SexAI	ACCWGGT	1 cut(s)	102
SfaNI	GCATC	1 cut(s)	676
SmlI	CTYRAG	2 cut(s)	512, 917
SmoI	CTYRAG	2 cut(s)	512, 917
SphI	GCATGC	1 cut(s)	455
Sse9I	AATT	6 cut(s)	13, 65, 120, 400, 761, 772
SseBI	AGGCCT	1 cut(s)	909
SsiI	CCGC	5 cut(s)	410, 519, 622, 626, 879
SspMI	CTAG	3 cut(s)	240, 308, 372
StuI	AGGCCT	1 cut(s)	909
StyD4I	CCNGG	5 cut(s)	102, 445, 483, 704, 904
StyI	CCWWGG	1 cut(s)	115
TaaI	ACNGT	3 cut(s)	234, 758, 869
TaiI	ACGT	3 cut(s)	468, 495, 824
TaqI	TCGA	2 cut(s)	138, 236
TasI	AATT	6 cut(s)	13, 65, 120, 400, 761, 772
TauI	GCSGC	1 cut(s)	882
Tru1I	TTAA	3 cut(s)	108, 123, 846
Tru9I	TTAA	3 cut(s)	108, 123, 846
TscAI	CASTG	2 cut(s)	138, 302
TseFI	GTSAC	1 cut(s)	469
TseI	GCWGC	1 cut(s)	884
Tsp45I	GTSAC	1 cut(s)	469
TspDTI	ATGAA	3 cut(s)	209, 311, 547
TspRI	CASTG	2 cut(s)	138, 302
XagI	CCTNNNNNAGG	1 cut(s)	482
XapI	RAATTY	3 cut(s)	13, 761, 772
XbaI	TCTAGA	1 cut(s)	307
XceI	RCATGY	1 cut(s)	455
XcmI	CCANNNNNNNNNTGG	1 cut(s)	959
XmiI	GTMKAC	2 cut(s)	236, 613
XspI	CTAG	3 cut(s)	240, 308, 372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.