Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0002796

Physical Location & Seq

Genomic Coordinates Reverse (-)

26599531 .. 26603044

Gene Structure 3514 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1124100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGGATAGGGATCCAAAGCCCCGTTCACTAAACCTGCAAGTTTCCTTAGTTTTGCAACTTTTCTCTTCAGTCGTAAGCAAAATGGCTTCCACAACAAAGCTACTGCTCACAGACCTCATGTCTGGTATGAGCCATGTCCCTTCAAACTACATCAGACCCTTCTCCGACCGTCCAAATCTCACTGATGTTCAGACATCAGATGCCTCCTCCATTCCTCTCATTGATCTCAAGGACCTCCATAGCCCCAAGCACTCTGATATTATCCAACAGATTGGTCTAGCATGCCAAACTGATGGTTTCTTCCAGGTGAAAAATCATGGAGTTCCAGAGACAATGATAAAAAACATGTTGAGTATAGCAAGAGAGTTTTTCAAATTTCCAGAAAGTGAGAGGTTGAAGATGTACTCAGATGACCCTTTTAAGACCACCAGGCTCTCCACCAGTTTCAATGTCAGGACTGAAAAATTGTCCAACTGGAGGGACTTCCTTAGATTGCATTGCTTCCCACTTCAAGACTATGTCCAAGAATGGCCTAACAATCCCCCGTTGTTCAGGGAGCAAGTGGGTGAGTACTGCACAAGTGTGAGAGGATTAGTGCTGAGATTGCTTGAGGCCATATCAGAGAGCTTGGGCTTGGAAAAGAACTATATTGTTAAGGCATTGGGAAAGCAAGGACAGCATATGGCTTTGAATTACTATCCACCATGTCCACAGCCAGAGCTGACTTATGGATTGCCTGGACATACTGACGCTAACCTAATTACCATCCTTCTCCAAGATGAGGTGCCTGGGTTGCAGGTCCTTAGAAATGGCAAGTGGGTTGCTGTCAACCCCATTCCCAACACTTTCATTGTCAATATTGGTGATATGATGCAGGTAATTAGCAACAGTAGGTACAAGAGTGTGCTGCATAGGGCTGTGGTAAATTGTAATTCGGAGAGGATATCGATCCCAACTTTCTACTGTCCAGCACCAGATGCAATGATTGGGCCTGCCAGGGAGCTCATCAACCATGACCATCCAGCCATGTTCAGAAACTTCACATATGCTGAATACTTCGAAAAATTCTGGAATAGAGGACTTGCAACTGAGTGTTGCTTAGACTTGTTCAAACCCACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002229 GO:0002239 GO:0006082 GO:0006725 GO:0006950 GO:0006952 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009056 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009696 GO:0009719 GO:0009725 GO:0009751 GO:0009987 GO:0010033 GO:0010150 GO:0010817 GO:0014070 GO:0016054 GO:0016999 GO:0017001 GO:0017144 GO:0018958 GO:0019336 GO:0019439 GO:0019752 GO:0032501 GO:0032502 GO:0032787 GO:0042221 GO:0042445 GO:0042447 GO:0042493 GO:0042537 GO:0042737 GO:0043207 GO:0043436 GO:0044237 GO:0044248 GO:0044281 GO:0044282 GO:0046244 GO:0046395 GO:0046677 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0065008 GO:0071704 GO:0072329 GO:0090693 GO:0098542 GO:0099402 GO:1901360 GO:1901361 GO:1901575 GO:1901615 GO:1901616 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

374

Amino Acids

42.52

Weight (kDa)

7.13

Isoelectric Point (pI)

42.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	71 - 179	1.2e-26	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	226 - 323	1.2e-38	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10490 AT4G10500
fragaria_vesca	FvH4_5g10430 FvH4_7g17840
malus_domestica	MD01G1090000.v1.1 MD06G1124100.v1.1 MD14G1140400.v1.1 MD14G1140700.v1.1 MD14G1141000.v1.1 MD14G1141200.v1.1
prunus_persica	Prupe.2G199700_v2.0.a1 Prupe.2G200200_v2.0.a1 Prupe.2G200200_v2.0.a1 Prupe.2G200200_v2.0.a1 Prupe.5G134500_v2.0.a1 Prupe.5G134700_v2.0.a1
pyrus_communis	pycom01g11450 pycom06g11450 pycom14g11590
rosa_chinensis	RchiOBHm_Chr1g0361261 RchiOBHm_Chr7g0187801
rosa_laevigata	RLG00000004755 RLG00000027730
rosa_multiflora	Rmu_sc0002119.1_g000038 Rmu_sc0004483.1_g000038
rosa_roxburghii	Rroxscaffold_3G00267060 Rroxscaffold_4G00295120
rosa_rugosa	Rorug01G0287700 Rorug01G0287700 Rorug02G0186700 Rorug06G0484300
rosa_samantha	Rh1AG299000 Rh1BG262900 Rh1CG280300 Rh1DG292900 Rh7CG090300 Rh7DG091900
rosa_wichuraiana	Rw1G026450 Rw7G007720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	42, 787, 865
AccB1I	GGYRCC	1 cut(s)	784
AclWI	GGATC	3 cut(s)	5, 18, 943
AcsI	RAATTY	2 cut(s)	374, 1064
AcuI	CTGAAG	1 cut(s)	51
AfaI	GTAC	3 cut(s)	404, 572, 896
AfiI	CCNNNNNNNGG	2 cut(s)	477, 781
AflIII	ACRYGT	1 cut(s)	345
AgsI	TTSAA	7 cut(s)	144, 373, 397, 448, 512, 691, 1111
AhdI	GACNNNNNGTC	1 cut(s)	118
AjnI	CCWGG	5 cut(s)	303, 428, 736, 787, 995
AjuI	GAANNNNNNNTTGG	2 cut(s)	7, 39
AleI	CACNNNNGTG	1 cut(s)	581
AluBI	AGCT	4 cut(s)	100, 627, 721, 1003
AluI	AGCT	4 cut(s)	100, 627, 721, 1003
Alw21I	GWGCWC	1 cut(s)	1005
Alw26I	GTCTC	1 cut(s)	323
AlwI	GGATC	3 cut(s)	5, 18, 943
AoxI	GGCC	3 cut(s)	530, 612, 989
ApeKI	GCWGC	1 cut(s)	907
ApoI	RAATTY	2 cut(s)	374, 1064
AspS9I	GGNCC	3 cut(s)	232, 799, 989
AsuHPI	GGTGA	3 cut(s)	319, 578, 875
AsuII	TTCGAA	1 cut(s)	1059
AvaII	GGWCC	2 cut(s)	232, 799
BaeI	ACNNNNGTAYC	2 cut(s)	886, 919
BamHI	GGATCC	1 cut(s)	10
BanI	GGYRCC	1 cut(s)	784
BanII	GRGCYC	1 cut(s)	1005
Bbv12I	GWGCWC	1 cut(s)	1005
BbvI	GCAGC	1 cut(s)	894
BccI	CCATC	3 cut(s)	287, 773, 1026
BciT130I	CCWGG	5 cut(s)	305, 430, 738, 789, 997
BcoDI	GTCTC	1 cut(s)	323
BfaI	CTAG	1 cut(s)	278
BfuAI	ACCTGC	3 cut(s)	42, 787, 865
BisI	GCNGC	1 cut(s)	908
BlsI	GCNGC	1 cut(s)	909
BmcAI	AGTACT	1 cut(s)	572
Bme1390I	CCNGG	5 cut(s)	305, 430, 738, 789, 997
Bme18I	GGWCC	2 cut(s)	232, 799
BmeRI	GACNNNNNGTC	1 cut(s)	118
BmgT120I	GGNCC	3 cut(s)	232, 799, 989
BmiI	GGNNCC	2 cut(s)	12, 786
BmrFI	CCNGG	5 cut(s)	305, 430, 738, 789, 997
BmsI	GCATC	3 cut(s)	190, 861, 967
BpmI	CTGGAG	1 cut(s)	496
Bpu14I	TTCGAA	1 cut(s)	1059
BpuEI	CTTGAG	2 cut(s)	212, 629
Bsa29I	ATCGAT	1 cut(s)	947
BsaBI	GATNNNNATC	2 cut(s)	9, 947
BsaJI	CCNNGG	2 cut(s)	788, 996
Bsc4I	CCNNNNNNNGG	2 cut(s)	477, 781
Bse1I	ACTGG	2 cut(s)	441, 479
Bse3DI	GCAATG	2 cut(s)	496, 987
Bse8I	GATNNNNATC	2 cut(s)	9, 947
BseBI	CCWGG	5 cut(s)	305, 430, 738, 789, 997
BseCI	ATCGAT	1 cut(s)	947
BseDI	CCNNGG	2 cut(s)	788, 996
BseGI	GGATG	2 cut(s)	765, 1018
BseJI	GATNNNNATC	2 cut(s)	9, 947
BseLI	CCNNNNNNNGG	2 cut(s)	477, 781
BseMI	GCAATG	2 cut(s)	496, 987
BseMII	CTCAG	3 cut(s)	420, 590, 1080
BseNI	ACTGG	2 cut(s)	441, 479
BseRI	GAGGAG	1 cut(s)	196
BseXI	GCAGC	1 cut(s)	894
BsgI	GTGCAG	1 cut(s)	559
Bsh1285I	CGRYCG	1 cut(s)	169
BshFI	GGCC	3 cut(s)	532, 614, 991
BshNI	GGYRCC	1 cut(s)	784
BshVI	ATCGAT	1 cut(s)	947
BsiEI	CGRYCG	1 cut(s)	169
BsiHKAI	GWGCWC	1 cut(s)	1005
BslFI	GGGAC	2 cut(s)	122, 494
BslI	CCNNNNNNNGG	2 cut(s)	477, 781
BsmAI	GTCTC	1 cut(s)	323
BsmFI	GGGAC	2 cut(s)	122, 494
BsnI	GGCC	3 cut(s)	532, 614, 991
Bsp119I	TTCGAA	1 cut(s)	1059
Bsp1286I	GDGCHC	1 cut(s)	1005
Bsp143I	GATC	3 cut(s)	10, 223, 948
BspANI	GGCC	3 cut(s)	532, 614, 991
BspCNI	CTCAG	3 cut(s)	419, 591, 1081
BspDI	ATCGAT	1 cut(s)	947
BspLI	GGNNCC	2 cut(s)	12, 786
BspMI	ACCTGC	3 cut(s)	42, 787, 865
BspPI	GGATC	3 cut(s)	5, 18, 943
BspT104I	TTCGAA	1 cut(s)	1059
BspT107I	GGYRCC	1 cut(s)	784
BsrDI	GCAATG	2 cut(s)	496, 987
BsrI	ACTGG	2 cut(s)	441, 479
BssECI	CCNNGG	2 cut(s)	788, 996
BssMI	GATC	3 cut(s)	10, 223, 948
Bst2UI	CCWGG	5 cut(s)	305, 430, 738, 789, 997
Bst4CI	ACNGT	3 cut(s)	170, 890, 965
Bst6I	CTCTTC	1 cut(s)	70
BstAPI	GCANNNNNTGC	1 cut(s)	977
BstBI	TTCGAA	1 cut(s)	1059
BstC8I	GCNNGC	2 cut(s)	283, 993
BstDEI	CTNAG	7 cut(s)	46, 406, 488, 599, 803, 1089, 1099
BstF5I	GGATG	2 cut(s)	765, 1018
BstKTI	GATC	3 cut(s)	13, 226, 951
BstMAI	GTCTC	1 cut(s)	323
BstMBI	GATC	3 cut(s)	10, 223, 948
BstMCI	CGRYCG	1 cut(s)	169
BstMWI	GCNNNNNNNGC	4 cut(s)	604, 676, 793, 977
BstNI	CCWGG	5 cut(s)	305, 430, 738, 789, 997
BstNSI	RCATGY	2 cut(s)	285, 349
BstSCI	CCNGG	5 cut(s)	303, 428, 736, 787, 995
BstV1I	GCAGC	1 cut(s)	894
BstX2I	RGATCY	1 cut(s)	10
BstXI	CCANNNNNNTGG	2 cut(s)	272, 293
BstYI	RGATCY	1 cut(s)	10
Bsu15I	ATCGAT	1 cut(s)	947
BsuRI	GGCC	3 cut(s)	532, 614, 991
BsuTUI	ATCGAT	1 cut(s)	947
BtsCI	GGATG	2 cut(s)	765, 1018
BtsIMutI	CAGTG	1 cut(s)	180
BveI	ACCTGC	3 cut(s)	42, 787, 865
Cac8I	GCNNGC	2 cut(s)	283, 993
Cfr13I	GGNCC	3 cut(s)	232, 799, 989
ClaI	ATCGAT	1 cut(s)	947
CseI	GACGC	1 cut(s)	758
Csp6I	GTAC	3 cut(s)	403, 571, 895
CviAII	CATG	9 cut(s)	118, 134, 282, 317, 346, 705, 1013, 1027, 1119
CviQI	GTAC	3 cut(s)	403, 571, 895
DdeI	CTNAG	7 cut(s)	46, 406, 488, 599, 803, 1089, 1099
DpnI	GATC	3 cut(s)	12, 225, 950
DpnII	GATC	3 cut(s)	10, 223, 948
DriI	GACNNNNNGTC	1 cut(s)	118
Eam1104I	CTCTTC	1 cut(s)	70
Eam1105I	GACNNNNNGTC	1 cut(s)	118
EarI	CTCTTC	1 cut(s)	70
Ecl136II	GAGCTC	1 cut(s)	1003
Eco24I	GRGCYC	1 cut(s)	1005
Eco32I	GATATC	1 cut(s)	945
Eco47I	GGWCC	2 cut(s)	232, 799
Eco53kI	GAGCTC	1 cut(s)	1003
Eco57I	CTGAAG	1 cut(s)	51
EcoICRI	GAGCTC	1 cut(s)	1003
EcoO109I	RGGNCCY	2 cut(s)	232, 799
EcoRII	CCWGG	5 cut(s)	303, 428, 736, 787, 995
EcoRV	GATATC	1 cut(s)	945
EcoT38I	GRGCYC	1 cut(s)	1005
FaeI	CATG	9 cut(s)	121, 137, 285, 320, 349, 708, 1016, 1030, 1122
FaqI	GGGAC	2 cut(s)	122, 494
FatI	CATG	9 cut(s)	117, 133, 281, 316, 345, 704, 1012, 1026, 1118
FauNDI	CATATG	2 cut(s)	681, 1045
Fnu4HI	GCNGC	1 cut(s)	908
FokI	GGATG	2 cut(s)	752, 1005
FriOI	GRGCYC	1 cut(s)	1005
Fsp4HI	GCNGC	1 cut(s)	908
FspBI	CTAG	1 cut(s)	278
GluI	GCNGC	1 cut(s)	908
GsuI	CTGGAG	1 cut(s)	496
HaeIII	GGCC	3 cut(s)	532, 614, 991
HgaI	GACGC	1 cut(s)	758
Hin1II	CATG	9 cut(s)	121, 137, 285, 320, 349, 708, 1016, 1030, 1122
HincII	GTYRAC	1 cut(s)	829
HindII	GTYRAC	1 cut(s)	829
HphI	GGTGA	3 cut(s)	319, 578, 875
Hpy166II	GTNNAC	3 cut(s)	26, 710, 829
Hpy188I	TCNGA	9 cut(s)	155, 166, 192, 199, 256, 409, 622, 937, 1034
Hpy188III	TCNNGA	5 cut(s)	326, 380, 454, 512, 1069
Hpy8I	GTNNAC	3 cut(s)	26, 710, 829
HpyAV	CCTTC	3 cut(s)	150, 169, 779
HpyCH4III	ACNGT	3 cut(s)	170, 890, 965
HpyCH4V	TGCA	9 cut(s)	37, 55, 496, 576, 796, 874, 910, 980, 1085
HpyF10VI	GCNNNNNNNGC	4 cut(s)	604, 676, 793, 977
HpyF3I	CTNAG	7 cut(s)	46, 406, 488, 599, 803, 1089, 1099
Hsp92II	CATG	9 cut(s)	121, 137, 285, 320, 349, 708, 1016, 1030, 1122
Kzo9I	GATC	3 cut(s)	10, 223, 948
LmnI	GCTCC	2 cut(s)	556, 1000
Lsp1109I	GCAGC	1 cut(s)	894
LweI	GCATC	3 cut(s)	190, 861, 967
MaeI	CTAG	1 cut(s)	278
MalI	GATC	3 cut(s)	12, 225, 950
MboI	GATC	3 cut(s)	10, 223, 948
MboII	GAAGA	3 cut(s)	57, 292, 409
MflI	RGATCY	1 cut(s)	10
MhlI	GDGCHC	1 cut(s)	1005
MluCI	AATT	8 cut(s)	374, 464, 691, 759, 879, 925, 931, 1064
MmeI	TCCRAC	3 cut(s)	189, 289, 495
MseI	TTAA	2 cut(s)	420, 654
MslI	CAYNNNNRTG	1 cut(s)	581
MspR9I	CCNGG	5 cut(s)	305, 430, 738, 789, 997
MvaI	CCWGG	5 cut(s)	305, 430, 738, 789, 997
MwoI	GCNNNNNNNGC	4 cut(s)	604, 676, 793, 977
NdeI	CATATG	2 cut(s)	681, 1045
NdeII	GATC	3 cut(s)	10, 223, 948
NlaIII	CATG	9 cut(s)	121, 137, 285, 320, 349, 708, 1016, 1030, 1122
NlaIV	GGNNCC	2 cut(s)	12, 786
NspI	RCATGY	2 cut(s)	285, 349
NspV	TTCGAA	1 cut(s)	1059
OliI	CACNNNNGTG	1 cut(s)	581
PaeI	GCATGC	1 cut(s)	285
PciI	ACATGT	1 cut(s)	345
PflFI	GACNNNGTC	1 cut(s)	518
PkrI	GCNGC	1 cut(s)	909
PpuMI	RGGWCCY	2 cut(s)	232, 799
PscI	ACATGT	1 cut(s)	345
Psp124BI	GAGCTC	1 cut(s)	1005
Psp5II	RGGWCCY	2 cut(s)	232, 799
Psp6I	CCWGG	5 cut(s)	303, 428, 736, 787, 995
PspGI	CCWGG	5 cut(s)	303, 428, 736, 787, 995
PspN4I	GGNNCC	2 cut(s)	12, 786
PspPI	GGNCC	3 cut(s)	232, 799, 989
PspPPI	RGGWCCY	2 cut(s)	232, 799
PsuI	RGATCY	1 cut(s)	10
PsyI	GACNNNGTC	1 cut(s)	518
RsaI	GTAC	3 cut(s)	404, 572, 896
RsaNI	GTAC	3 cut(s)	403, 571, 895
RseI	CAYNNNNRTG	1 cut(s)	581
SacI	GAGCTC	1 cut(s)	1005
SaqAI	TTAA	2 cut(s)	420, 654
SatI	GCNGC	1 cut(s)	908
Sau3AI	GATC	3 cut(s)	10, 223, 948
Sau96I	GGNCC	3 cut(s)	232, 799, 989
ScaI	AGTACT	1 cut(s)	572
ScrFI	CCNGG	5 cut(s)	305, 430, 738, 789, 997
SduI	GDGCHC	1 cut(s)	1005
SfaNI	GCATC	3 cut(s)	190, 861, 967
SfuI	TTCGAA	1 cut(s)	1059
SinI	GGWCC	2 cut(s)	232, 799
SmiMI	CAYNNNNRTG	1 cut(s)	581
SmlI	CTYRAG	2 cut(s)	227, 608
SmoI	CTYRAG	2 cut(s)	227, 608
SphI	GCATGC	1 cut(s)	285
Sse9I	AATT	8 cut(s)	374, 464, 691, 759, 879, 925, 931, 1064
SspI	AATATT	1 cut(s)	859
SspMI	CTAG	1 cut(s)	278
SstI	GAGCTC	1 cut(s)	1005
StyD4I	CCNGG	5 cut(s)	303, 428, 736, 787, 995
TaaI	ACNGT	3 cut(s)	170, 890, 965
TaqI	TCGA	2 cut(s)	947, 1059
TasI	AATT	8 cut(s)	374, 464, 691, 759, 879, 925, 931, 1064
TatI	WGTACW	2 cut(s)	402, 570
Tru1I	TTAA	2 cut(s)	420, 654
Tru9I	TTAA	2 cut(s)	420, 654
TscAI	CASTG	1 cut(s)	187
TseI	GCWGC	1 cut(s)	907
TspDTI	ATGAA	1 cut(s)	838
TspRI	CASTG	1 cut(s)	187
Tth111I	GACNNNGTC	1 cut(s)	518
VpaK11BI	GGWCC	2 cut(s)	232, 799
XapI	RAATTY	2 cut(s)	374, 1064
XceI	RCATGY	2 cut(s)	285, 349
XspI	CTAG	1 cut(s)	278
ZrmI	AGTACT	1 cut(s)	572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.