Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0002796

Physical Location & Seq

Genomic Coordinates Reverse (-)

23721949 .. 23724287

Gene Structure 2339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G200200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGGCTGCCAAATTATTATCCGATCTTGCATCTGGTGTGACTTGTGTTCCCTCCAACTATGTCCGGCCTGTACATGATCGTCCAAGTCTCGACCAAGTCCAGCCCTCCGATCACTCTATCCCTCTCATCAATCTCCACGGTTTCGACGGTTCGAGGCGCCATGAAATAATCAACCAGATAGGCCTTGCCTGCCAAAATTATGGTTTCTTTCAGGTCCAAAACCATGCAATTGAAGAGGCCGTGATCGACAACATGTTGAAAGTAGCAAGGGAGTTTTTTCATCTGCCAGAAAGTGAAAGGCTCAAGTGTTTCTCCGAAGACCCGTTGAAGACCACAAGACTGTCCACCAGTTTCAATGTCAAAACTGAGGAGGTCTCTAGCTGGAGAGATTACTTGAGACTCCATTGCTACCCTCTCGAGGACTACATGCATGAATGGCCCTCCAACCCTCCGTCTTTCAGGGAAGATGTGGCTGAGTATTGCAGGAATGTCAAAGGATTAGCAGAGAGACTTCTGGAAGCCATATCAGAAAGCTTAGGCTTAGAAAAGGATTACATGAACAGGGCATTGGGGAAGCATGGGCAGCACATGGCCATCAATTACTATCCGCCTTGCCATCAGCCGGAGCTGACCTATGGCTTACCTGGTCATGCTGATCCTAATGTCGTCACCCTTCTCCTTCAAGATGACGTGGCAGGCTTGCAGGTCTTCAACAATGGCAGATGGGTTGCAGTCAAGCCCATGCCACATACGTTCATTGTCAACATTGGTGATCAAATCCAGGTTGTTAGTAATGATCGTTATAAGAGTGTACTCCATCGAGCAGTGGTGAATTGCGACAAGGAAAGGATCTCCATCCCAACATTCTATTGCCCATCGTATGATGCTGTGATGGAGCCAGCCCCCCAACTTGTTGATGATCATCACCCTCCCCTCTACAGGAGCTTTACCTACGCTGAGTTCTATGAGAAATTCTGGGACAGAGGCCTCAACACTCGATCCTCTTTGGACTTGTTTAAGACTACCTCTCATGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

346

Amino Acids

39.53

Weight (kDa)

5.84

Isoelectric Point (pI)

47.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10490 AT4G10500
fragaria_vesca	FvH4_5g10430 FvH4_7g17840
malus_domestica	MD01G1090000.v1.1 MD06G1124100.v1.1 MD14G1140400.v1.1 MD14G1140700.v1.1 MD14G1141000.v1.1 MD14G1141200.v1.1
prunus_persica	Prupe.2G199700_v2.0.a1 Prupe.2G200200_v2.0.a1 Prupe.2G200200_v2.0.a1 Prupe.2G200200_v2.0.a1 Prupe.5G134500_v2.0.a1 Prupe.5G134700_v2.0.a1
pyrus_communis	pycom01g11450 pycom06g11450 pycom14g11590
rosa_chinensis	RchiOBHm_Chr1g0361261 RchiOBHm_Chr7g0187801
rosa_laevigata	RLG00000004755 RLG00000027730
rosa_multiflora	Rmu_sc0002119.1_g000038 Rmu_sc0004483.1_g000038
rosa_roxburghii	Rroxscaffold_3G00267060 Rroxscaffold_4G00295120
rosa_rugosa	Rorug01G0287700 Rorug01G0287700 Rorug02G0186700 Rorug06G0484300
rosa_samantha	Rh1AG299000 Rh1BG262900 Rh1CG280300 Rh1DG292900 Rh7CG090300 Rh7DG091900
rosa_wichuraiana	Rw1G026450 Rw7G007720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	804
Acc36I	ACCTGC	1 cut(s)	694
AccB1I	GGYRCC	1 cut(s)	156
AciI	CCGC	1 cut(s)	608
AclWI	GGATC	3 cut(s)	650, 857, 993
AcoI	YGGCCR	1 cut(s)	591
AcsI	RAATTY	1 cut(s)	971
AcyI	GRCGYC	1 cut(s)	157
AfaI	GTAC	2 cut(s)	72, 813
AfiI	CCNNNNNNNGG	3 cut(s)	418, 622, 939
AflIII	ACRYGT	1 cut(s)	252
AgsI	TTSAA	6 cut(s)	233, 259, 328, 355, 683, 712
AjiI	CACGTC	1 cut(s)	691
AjnI	CCWGG	2 cut(s)	643, 780
AjuI	GAANNNNNNNTTGG	2 cut(s)	551, 583
AluBI	AGCT	4 cut(s)	381, 534, 628, 945
AluI	AGCT	4 cut(s)	381, 534, 628, 945
Alw26I	GTCTC	4 cut(s)	92, 379, 391, 502
AlwI	GGATC	3 cut(s)	650, 857, 993
Ama87I	CYCGRG	1 cut(s)	416
AoxI	GGCC	6 cut(s)	65, 181, 237, 437, 591, 985
ApeKI	GCWGC	2 cut(s)	5, 583
ApoI	RAATTY	1 cut(s)	971
AspLEI	GCGC	1 cut(s)	159
AspS9I	GGNCC	2 cut(s)	214, 438
AsuHPI	GGTGA	4 cut(s)	661, 782, 841, 917
AvaI	CYCGRG	1 cut(s)	416
AvaII	GGWCC	1 cut(s)	214
BalI	TGGCCA	1 cut(s)	593
BanI	GGYRCC	1 cut(s)	156
BbsI	GAAGAC	3 cut(s)	324, 335, 700
BbvI	GCAGC	1 cut(s)	595
BccI	CCATC	7 cut(s)	602, 624, 717, 825, 863, 883, 886
BceAI	ACGGC	1 cut(s)	224
BciT130I	CCWGG	2 cut(s)	645, 782
BclI	TGATCA	2 cut(s)	772, 919
BcoDI	GTCTC	4 cut(s)	92, 379, 391, 502
BfaI	CTAG	1 cut(s)	378
BfmI	CTRYAG	1 cut(s)	937
BfoI	RGCGCY	1 cut(s)	160
BfuAI	ACCTGC	1 cut(s)	694
BisI	GCNGC	2 cut(s)	6, 584
BlsI	GCNGC	2 cut(s)	7, 585
Bme1390I	CCNGG	2 cut(s)	645, 782
Bme18I	GGWCC	1 cut(s)	214
BmeT110I	CYCGRG	1 cut(s)	416
BmgBI	CACGTC	1 cut(s)	691
BmgT120I	GGNCC	2 cut(s)	214, 438
BmiI	GGNNCC	2 cut(s)	158, 897
BmrFI	CCNGG	2 cut(s)	645, 782
BmsI	GCATC	2 cut(s)	38, 874
BpiI	GAAGAC	3 cut(s)	324, 335, 700
BplI	GAGNNNNNCTC	2 cut(s)	359, 391
BpmI	CTGGAG	1 cut(s)	403
Bpu10I	CCTNAGC	1 cut(s)	535
BpuEI	CTTGAG	2 cut(s)	287, 415
BsaBI	GATNNNNATC	2 cut(s)	854, 921
BsaHI	GRCGYC	1 cut(s)	157
BsaI	GGTCTC	1 cut(s)	379
BsaJI	CCNNGG	1 cut(s)	136
Bsc4I	CCNNNNNNNGG	3 cut(s)	418, 622, 939
Bse1I	ACTGG	1 cut(s)	348
Bse3DI	GCAATG	1 cut(s)	403
Bse8I	GATNNNNATC	2 cut(s)	854, 921
BseBI	CCWGG	2 cut(s)	645, 782
BseDI	CCNNGG	1 cut(s)	136
BseGI	GGATG	1 cut(s)	855
BseJI	GATNNNNATC	2 cut(s)	854, 921
BseLI	CCNNNNNNNGG	3 cut(s)	418, 622, 939
BseMI	GCAATG	1 cut(s)	403
BseMII	CTCAG	3 cut(s)	357, 465, 948
BseNI	ACTGG	1 cut(s)	348
BseRI	GAGGAG	1 cut(s)	383
BseXI	GCAGC	1 cut(s)	595
BshFI	GGCC	6 cut(s)	67, 183, 239, 439, 593, 987
BshNI	GGYRCC	1 cut(s)	156
BsiHKCI	CYCGRG	1 cut(s)	416
BsiSI	CCGG	2 cut(s)	64, 623
BslFI	GGGAC	1 cut(s)	992
BslI	CCNNNNNNNGG	3 cut(s)	418, 622, 939
BsmAI	GTCTC	4 cut(s)	92, 379, 391, 502
BsmFI	GGGAC	1 cut(s)	992
BsnI	GGCC	6 cut(s)	67, 183, 239, 439, 593, 987
Bso31I	GGTCTC	1 cut(s)	379
BsoBI	CYCGRG	1 cut(s)	416
Bsp1407I	TGTACA	1 cut(s)	70
BspACI	CCGC	1 cut(s)	608
BspANI	GGCC	6 cut(s)	67, 183, 239, 439, 593, 987
BspCNI	CTCAG	3 cut(s)	358, 466, 949
BspLI	GGNNCC	2 cut(s)	158, 897
BspMI	ACCTGC	1 cut(s)	694
BspPI	GGATC	3 cut(s)	650, 857, 993
BspT107I	GGYRCC	1 cut(s)	156
BspTNI	GGTCTC	1 cut(s)	379
BsrDI	GCAATG	1 cut(s)	403
BsrGI	TGTACA	1 cut(s)	70
BsrI	ACTGG	1 cut(s)	348
BssECI	CCNNGG	1 cut(s)	136
BssNI	GRCGYC	1 cut(s)	157
Bst2UI	CCWGG	2 cut(s)	645, 782
Bst4CI	ACNGT	3 cut(s)	140, 149, 342
Bst6I	CTCTTC	1 cut(s)	228
BstACI	GRCGYC	1 cut(s)	157
BstAUI	TGTACA	1 cut(s)	70
BstC8I	GCNNGC	4 cut(s)	190, 697, 701, 900
BstDEI	CTNAG	5 cut(s)	366, 474, 535, 541, 957
BstDSI	CCRYGG	1 cut(s)	136
BstF5I	GGATG	1 cut(s)	855
BstH2I	RGCGCY	1 cut(s)	160
BstHHI	GCGC	1 cut(s)	159
BstMAI	GTCTC	4 cut(s)	92, 379, 391, 502
BstMWI	GCNNNNNNNGC	3 cut(s)	189, 436, 583
BstNI	CCWGG	2 cut(s)	645, 782
BstNSI	RCATGY	2 cut(s)	256, 430
BstSCI	CCNGG	2 cut(s)	643, 780
BstSFI	CTRYAG	1 cut(s)	937
BstV1I	GCAGC	1 cut(s)	595
BstV2I	GAAGAC	3 cut(s)	324, 335, 700
BstX2I	RGATCY	1 cut(s)	849
BstXI	CCANNNNNNTGG	1 cut(s)	200
BstYI	RGATCY	1 cut(s)	849
BsuRI	GGCC	6 cut(s)	67, 183, 239, 439, 593, 987
BtgI	CCRYGG	1 cut(s)	136
BtrI	CACGTC	1 cut(s)	691
BtsCI	GGATG	1 cut(s)	855
BtsI	GCAGTG	1 cut(s)	831
BtsIMutI	CAGTG	1 cut(s)	831
BveI	ACCTGC	1 cut(s)	694
Cac8I	GCNNGC	4 cut(s)	190, 697, 701, 900
CfoI	GCGC	1 cut(s)	159
Cfr13I	GGNCC	2 cut(s)	214, 438
CsiI	ACCWGGT	1 cut(s)	643
Csp6I	GTAC	2 cut(s)	71, 812
CviQI	GTAC	2 cut(s)	71, 812
DdeI	CTNAG	5 cut(s)	366, 474, 535, 541, 957
DinI	GGCGCC	1 cut(s)	158
EaeI	YGGCCR	1 cut(s)	591
Eam1104I	CTCTTC	1 cut(s)	228
EarI	CTCTTC	1 cut(s)	228
EciI	GGCGGA	1 cut(s)	597
Eco147I	AGGCCT	2 cut(s)	183, 987
Eco31I	GGTCTC	1 cut(s)	379
Eco47I	GGWCC	1 cut(s)	214
Eco88I	CYCGRG	1 cut(s)	416
EcoRII	CCWGG	2 cut(s)	643, 780
EcoT22I	ATGCAT	1 cut(s)	432
EgeI	GGCGCC	1 cut(s)	158
EheI	GGCGCC	1 cut(s)	158
FaqI	GGGAC	1 cut(s)	992
FbaI	TGATCA	2 cut(s)	772, 919
Fnu4HI	GCNGC	2 cut(s)	6, 584
FokI	GGATG	1 cut(s)	842
Fsp4HI	GCNGC	2 cut(s)	6, 584
FspBI	CTAG	1 cut(s)	378
GlaI	GCGC	1 cut(s)	158
GluI	GCNGC	2 cut(s)	6, 584
GsuI	CTGGAG	1 cut(s)	403
HaeII	RGCGCY	1 cut(s)	160
HaeIII	GGCC	6 cut(s)	67, 183, 239, 439, 593, 987
HapII	CCGG	2 cut(s)	64, 623
HhaI	GCGC	1 cut(s)	159
Hin1I	GRCGYC	1 cut(s)	157
Hin6I	GCGC	1 cut(s)	157
HinP1I	GCGC	1 cut(s)	157
HincII	GTYRAC	1 cut(s)	763
HindII	GTYRAC	1 cut(s)	763
HindIII	AAGCTT	1 cut(s)	532
HinfI	GANTC	1 cut(s)	399
HpaII	CCGG	2 cut(s)	64, 623
HphI	GGTGA	4 cut(s)	661, 782, 841, 917
Hpy166II	GTNNAC	3 cut(s)	345, 763, 812
Hpy188I	TCNGA	4 cut(s)	22, 109, 316, 529
Hpy188III	TCNNGA	4 cut(s)	89, 416, 515, 683
Hpy8I	GTNNAC	3 cut(s)	345, 763, 812
Hpy99I	CGWCG	1 cut(s)	149
HpyAV	CCTTC	2 cut(s)	683, 689
HpyCH4III	ACNGT	3 cut(s)	140, 149, 342
HpyCH4IV	ACGT	2 cut(s)	690, 752
HpyCH4V	TGCA	6 cut(s)	29, 227, 430, 483, 703, 731
HpyF10VI	GCNNNNNNNGC	3 cut(s)	189, 436, 583
HpyF3I	CTNAG	5 cut(s)	366, 474, 535, 541, 957
HpySE526I	ACGT	2 cut(s)	690, 752
Hsp92I	GRCGYC	1 cut(s)	157
HspAI	GCGC	1 cut(s)	157
KasI	GGCGCC	1 cut(s)	156
Ksp22I	TGATCA	2 cut(s)	772, 919
LmnI	GCTCC	3 cut(s)	625, 895, 942
Lsp1109I	GCAGC	1 cut(s)	595
LweI	GCATC	2 cut(s)	38, 874
MabI	ACCWGGT	1 cut(s)	643
MaeI	CTAG	1 cut(s)	378
MaeII	ACGT	2 cut(s)	690, 752
MaeIII	GTNAC	2 cut(s)	37, 667
MboII	GAAGA	5 cut(s)	245, 329, 340, 476, 700
MfeI	CAATTG	1 cut(s)	228
MflI	RGATCY	1 cut(s)	849
MlsI	TGGCCA	1 cut(s)	593
MluCI	AATT	6 cut(s)	11, 196, 228, 598, 832, 971
MluNI	TGGCCA	1 cut(s)	593
Mly113I	GGCGCC	1 cut(s)	157
MlyI	GAGTC	1 cut(s)	393
MmeI	TCCRAC	2 cut(s)	78, 468
Mox20I	TGGCCA	1 cut(s)	593
Mph1103I	ATGCAT	1 cut(s)	432
MscI	TGGCCA	1 cut(s)	593
MseI	TTAA	2 cut(s)	1017, 1036
Msp20I	TGGCCA	1 cut(s)	593
MspI	CCGG	2 cut(s)	64, 623
MspR9I	CCNGG	2 cut(s)	645, 782
MunI	CAATTG	1 cut(s)	228
MvaI	CCWGG	2 cut(s)	645, 782
MwoI	GCNNNNNNNGC	3 cut(s)	189, 436, 583
NarI	GGCGCC	1 cut(s)	157
NlaIV	GGNNCC	2 cut(s)	158, 897
NmuCI	GTSAC	2 cut(s)	37, 667
NsiI	ATGCAT	1 cut(s)	432
NspI	RCATGY	2 cut(s)	256, 430
PaeR7I	CTCGAG	1 cut(s)	416
PceI	AGGCCT	2 cut(s)	183, 987
PciI	ACATGT	1 cut(s)	252
PflFI	GACNNNGTC	1 cut(s)	95
PkrI	GCNGC	2 cut(s)	7, 585
PleI	GAGTC	1 cut(s)	393
PluTI	GGCGCC	1 cut(s)	160
PpsI	GAGTC	1 cut(s)	393
PscI	ACATGT	1 cut(s)	252
PsiI	TTATAA	1 cut(s)	804
Psp6I	CCWGG	2 cut(s)	643, 780
PspGI	CCWGG	2 cut(s)	643, 780
PspN4I	GGNNCC	2 cut(s)	158, 897
PspPI	GGNCC	2 cut(s)	214, 438
PsuI	RGATCY	1 cut(s)	849
PsyI	GACNNNGTC	1 cut(s)	95
RsaI	GTAC	2 cut(s)	72, 813
RsaNI	GTAC	2 cut(s)	71, 812
SaqAI	TTAA	2 cut(s)	1017, 1036
SatI	GCNGC	2 cut(s)	6, 584
Sau96I	GGNCC	2 cut(s)	214, 438
SchI	GAGTC	1 cut(s)	393
ScrFI	CCNGG	2 cut(s)	645, 782
SexAI	ACCWGGT	1 cut(s)	643
SfaNI	GCATC	2 cut(s)	38, 874
SfcI	CTRYAG	1 cut(s)	937
SfoI	GGCGCC	1 cut(s)	158
Sfr274I	CTCGAG	1 cut(s)	416
SinI	GGWCC	1 cut(s)	214
SlaI	CTCGAG	1 cut(s)	416
SmlI	CTYRAG	3 cut(s)	302, 394, 416
SmoI	CTYRAG	3 cut(s)	302, 394, 416
Sse9I	AATT	6 cut(s)	11, 196, 228, 598, 832, 971
SseBI	AGGCCT	2 cut(s)	183, 987
SsiI	CCGC	1 cut(s)	608
SspDI	GGCGCC	1 cut(s)	156
SspMI	CTAG	1 cut(s)	378
StuI	AGGCCT	2 cut(s)	183, 987
StyD4I	CCNGG	2 cut(s)	643, 780
TaaI	ACNGT	3 cut(s)	140, 149, 342
TaiI	ACGT	2 cut(s)	693, 755
TaqI	TCGA	7 cut(s)	90, 144, 152, 246, 417, 820, 997
TasI	AATT	6 cut(s)	11, 196, 228, 598, 832, 971
TatI	WGTACW	2 cut(s)	70, 811
Tru1I	TTAA	2 cut(s)	1017, 1036
Tru9I	TTAA	2 cut(s)	1017, 1036
TscAI	CASTG	1 cut(s)	831
TseFI	GTSAC	2 cut(s)	37, 667
TseI	GCWGC	2 cut(s)	5, 583
Tsp45I	GTSAC	2 cut(s)	37, 667
TspDTI	ATGAA	5 cut(s)	177, 269, 447, 572, 745
TspGWI	ACGGA	1 cut(s)	441
TspRI	CASTG	1 cut(s)	831
Tth111I	GACNNNGTC	1 cut(s)	95
VpaK11BI	GGWCC	1 cut(s)	214
XapI	RAATTY	1 cut(s)	971
XceI	RCATGY	2 cut(s)	256, 430
XhoI	CTCGAG	1 cut(s)	416
XspI	CTAG	1 cut(s)	378
Zsp2I	ATGCAT	1 cut(s)	432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.