Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0002796

Physical Location & Seq

Genomic Coordinates Forward (+)

5943568 .. 5945039

Gene Structure 1472 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g10430.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGACCACAGCAAAGCTACTCCTTACAGACCTCATCCCCGTCGTCGACCATGTCCCTTCAAACTACATTCGCCCCATCTCCGACCGTCCAAACCTCGCCGACGTCCAAGCGTCGTCGGAGGGCTCCATCCCTCTCATTGATCTTCAGGGCCTCAACGGCCCCAACCACTCTGATATTATCCAACAGATTGCCCAAGCTTGCCAAAATGATGGCTTCTTTCAGGTTAAAAATCATGGGGTACCGGCGGAGATGATCGACGGCATGTTAAATATAGCAAGAGAGTTTTTCAGGTTGCCTGAGAGTGAGAGGATGAAGATGTACTCTGACGACCCTTCAAAGACTACAAGGCTGTCCACTAGTTTCAATGTCAAGACAGAAAAAACCGCTAACTGGAGAGACTTTCTCAGACTCCATTGCTACCCTCTTGAAGATTACGTCCATGAATGGCCTTCCAATCCTCCCTCTTTCAGGGAGGAAGTGGGTGAGTATTGCACAAGTGTTAGAGGACTAGTGCTGAAACTGCTGGAGGCCATATCAGAGAGCTTGGGACTGCAAAAGGACTACATTGTGAAAGCTTTAGGCAAGCAAGCACAACATATGGCTTTGAATTACTACCCACCATGTCCAGAGCCAGAGCTTACTTACGGCTTGCCTGGACACACCGACGGTAACCTAATCACGATTCTTCTCCAAGACGATGTACCTGGATTGCAAGTCCTTCGAAAGGGCAAGTGGGTTGCTGTGAACCCTATTCCCAACACTTACATTGTCAATATTGGTGATCAAATGCAGGTAATAAGCAATGATAGGTACAAGAGTGTGCTGCACAGAGCTGTAGTGAACTACAACAAAGAGAGAATTTCAGTTCCAACCTTCTACTGTCCATCACCTGATGCACTGATTGGCCCTGCCAAGGAGCTCGTCAGCCATGATCAACCAGCAGTGTACAGAAACTTCACATATGCAGAGTTCTATTCGAAATTCTGGGACAGAGGACTTGCCAAAGAATGCTGCTTAGACTTGTTTAAACAAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002229 GO:0002239 GO:0006082 GO:0006725 GO:0006950 GO:0006952 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009056 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009696 GO:0009719 GO:0009725 GO:0009751 GO:0009987 GO:0010033 GO:0010150 GO:0010817 GO:0014070 GO:0016054 GO:0016999 GO:0017001 GO:0017144 GO:0018958 GO:0019336 GO:0019439 GO:0019752 GO:0032501 GO:0032502 GO:0032787 GO:0042221 GO:0042445 GO:0042447 GO:0042493 GO:0042537 GO:0042737 GO:0043207 GO:0043436 GO:0044237 GO:0044248 GO:0044281 GO:0044282 GO:0046244 GO:0046395 GO:0046677 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0065008 GO:0071704 GO:0072329 GO:0090693 GO:0098542 GO:0099402 GO:1901360 GO:1901361 GO:1901575 GO:1901615 GO:1901616 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

346

Amino Acids

39.07

Weight (kDa)

5.74

Isoelectric Point (pI)

41.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	43 - 151	1.1e-30	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	198 - 295	1.5e-37	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10490 AT4G10500
fragaria_vesca	FvH4_5g10430 FvH4_7g17840
malus_domestica	MD01G1090000.v1.1 MD06G1124100.v1.1 MD14G1140400.v1.1 MD14G1140700.v1.1 MD14G1141000.v1.1 MD14G1141200.v1.1
prunus_persica	Prupe.2G199700_v2.0.a1 Prupe.2G200200_v2.0.a1 Prupe.2G200200_v2.0.a1 Prupe.2G200200_v2.0.a1 Prupe.5G134500_v2.0.a1 Prupe.5G134700_v2.0.a1
pyrus_communis	pycom01g11450 pycom06g11450 pycom14g11590
rosa_chinensis	RchiOBHm_Chr1g0361261 RchiOBHm_Chr7g0187801
rosa_laevigata	RLG00000004755 RLG00000027730
rosa_multiflora	Rmu_sc0002119.1_g000038 Rmu_sc0004483.1_g000038
rosa_roxburghii	Rroxscaffold_3G00267060 Rroxscaffold_4G00295120
rosa_rugosa	Rorug01G0287700 Rorug01G0287700 Rorug02G0186700 Rorug06G0484300
rosa_samantha	Rh1AG299000 Rh1BG262900 Rh1CG280300 Rh1DG292900 Rh7CG090300 Rh7DG091900
rosa_wichuraiana	Rw1G026450 Rw7G007720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	105
Acc36I	ACCTGC	1 cut(s)	781
Acc65I	GGTACC	1 cut(s)	238
AccB1I	GGYRCC	1 cut(s)	238
AccI	GTMKAC	1 cut(s)	45
AciI	CCGC	2 cut(s)	245, 384
AcsI	RAATTY	3 cut(s)	858, 980, 1032
AcuI	CTGAAG	1 cut(s)	128
AcyI	GRCGYC	1 cut(s)	102
AfaI	GTAC	5 cut(s)	240, 320, 702, 812, 947
AfiI	CCNNNNNNNGG	4 cut(s)	390, 468, 724, 913
AgsI	TTSAA	5 cut(s)	60, 336, 364, 428, 607
AhlI	ACTAGT	2 cut(s)	356, 508
AjnI	CCWGG	2 cut(s)	652, 703
AluBI	AGCT	7 cut(s)	16, 197, 543, 575, 637, 833, 919
AluI	AGCT	7 cut(s)	16, 197, 543, 575, 637, 833, 919
Alw21I	GWGCWC	1 cut(s)	921
Alw26I	GTCTC	1 cut(s)	390
AoxI	GGCC	5 cut(s)	148, 157, 446, 528, 904
ApeKI	GCWGC	2 cut(s)	823, 1011
ApoI	RAATTY	3 cut(s)	858, 980, 1032
Asp718I	GGTACC	1 cut(s)	238
AspS9I	GGNCC	3 cut(s)	148, 158, 905
AsuHPI	GGTGA	3 cut(s)	494, 791, 879
AsuII	TTCGAA	2 cut(s)	721, 977
BaeI	ACNNNNGTAYC	2 cut(s)	802, 835
BanI	GGYRCC	1 cut(s)	238
BanII	GRGCYC	2 cut(s)	125, 921
BarI	GAAGNNNNNNTAC	2 cut(s)	938, 970
Bbv12I	GWGCWC	1 cut(s)	921
BbvI	GCAGC	2 cut(s)	810, 998
BccI	CCATC	4 cut(s)	83, 134, 203, 892
BceAI	ACGGC	3 cut(s)	172, 274, 661
BcgI	CGANNNNNNTGC	2 cut(s)	701, 735
BciT130I	CCWGG	2 cut(s)	654, 705
BclI	TGATCA	2 cut(s)	781, 931
BcoDI	GTCTC	1 cut(s)	390
BcuI	ACTAGT	2 cut(s)	356, 508
BfaI	CTAG	2 cut(s)	357, 509
BfmI	CTRYAG	1 cut(s)	834
BfuAI	ACCTGC	1 cut(s)	781
BglI	GCCNNNNNGGC	1 cut(s)	156
BisI	GCNGC	2 cut(s)	824, 1012
BlsI	GCNGC	2 cut(s)	825, 1013
Bme1390I	CCNGG	2 cut(s)	654, 705
BmgT120I	GGNCC	3 cut(s)	148, 158, 905
BmiI	GGNNCC	3 cut(s)	124, 160, 240
BmrFI	CCNGG	2 cut(s)	654, 705
BmsI	GCATC	1 cut(s)	883
BplI	GAGNNNNNCTC	2 cut(s)	387, 419
BpmI	CTGGAG	2 cut(s)	412, 545
Bpu14I	TTCGAA	2 cut(s)	721, 977
BsaHI	GRCGYC	1 cut(s)	102
BsaJI	CCNNGG	1 cut(s)	912
Bsc4I	CCNNNNNNNGG	4 cut(s)	390, 468, 724, 913
Bse118I	RCCGGY	1 cut(s)	241
Bse1I	ACTGG	1 cut(s)	395
Bse3DI	GCAATG	2 cut(s)	412, 808
BseBI	CCWGG	2 cut(s)	654, 705
BseDI	CCNNGG	1 cut(s)	912
BseGI	GGATG	3 cut(s)	33, 126, 315
BseLI	CCNNNNNNNGG	4 cut(s)	390, 468, 724, 913
BseMI	GCAATG	2 cut(s)	412, 808
BseMII	CTCAG	2 cut(s)	288, 418
BseNI	ACTGG	1 cut(s)	395
BseXI	GCAGC	2 cut(s)	810, 998
BsgI	GTGCAG	1 cut(s)	809
Bsh1285I	CGRYCG	1 cut(s)	85
BshFI	GGCC	5 cut(s)	150, 159, 448, 530, 906
BshNI	GGYRCC	1 cut(s)	238
BsiEI	CGRYCG	1 cut(s)	85
BsiHKAI	GWGCWC	1 cut(s)	921
BsiSI	CCGG	1 cut(s)	242
BslFI	GGGAC	3 cut(s)	38, 561, 1001
BslI	CCNNNNNNNGG	4 cut(s)	390, 468, 724, 913
BsmAI	GTCTC	1 cut(s)	390
BsmFI	GGGAC	3 cut(s)	38, 561, 1001
BsmI	GAATGC	1 cut(s)	1013
BsnI	GGCC	5 cut(s)	150, 159, 448, 530, 906
Bsp119I	TTCGAA	2 cut(s)	721, 977
Bsp1286I	GDGCHC	2 cut(s)	125, 921
Bsp1407I	TGTACA	1 cut(s)	945
Bsp143I	GATC	4 cut(s)	139, 252, 781, 931
BspACI	CCGC	2 cut(s)	245, 384
BspANI	GGCC	5 cut(s)	150, 159, 448, 530, 906
BspCNI	CTCAG	2 cut(s)	289, 417
BspLI	GGNNCC	3 cut(s)	124, 160, 240
BspMI	ACCTGC	1 cut(s)	781
BspT104I	TTCGAA	2 cut(s)	721, 977
BspT107I	GGYRCC	1 cut(s)	238
BsrDI	GCAATG	2 cut(s)	412, 808
BsrFI	RCCGGY	1 cut(s)	241
BsrGI	TGTACA	1 cut(s)	945
BsrI	ACTGG	1 cut(s)	395
BssAI	RCCGGY	1 cut(s)	241
BssECI	CCNNGG	1 cut(s)	912
BssMI	GATC	4 cut(s)	139, 252, 781, 931
BssNI	GRCGYC	1 cut(s)	102
BssT1I	CCWWGG	1 cut(s)	912
Bst2UI	CCWGG	2 cut(s)	654, 705
Bst4CI	ACNGT	3 cut(s)	86, 668, 881
BstACI	GRCGYC	1 cut(s)	102
BstAUI	TGTACA	1 cut(s)	945
BstBI	TTCGAA	2 cut(s)	721, 977
BstC8I	GCNNGC	4 cut(s)	199, 584, 588, 650
BstDEI	CTNAG	3 cut(s)	297, 404, 1015
BstEII	GGTNACC	1 cut(s)	668
BstENI	CCTNNNNNAGG	2 cut(s)	466, 722
BstF5I	GGATG	3 cut(s)	33, 126, 315
BstKTI	GATC	4 cut(s)	142, 255, 784, 934
BstMAI	GTCTC	1 cut(s)	390
BstMBI	GATC	4 cut(s)	139, 252, 781, 931
BstMCI	CGRYCG	1 cut(s)	85
BstMWI	GCNNNNNNNGC	2 cut(s)	156, 520
BstNI	CCWGG	2 cut(s)	654, 705
BstNSI	RCATGY	1 cut(s)	265
BstPI	GGTNACC	1 cut(s)	668
BstSCI	CCNGG	2 cut(s)	652, 703
BstSFI	CTRYAG	1 cut(s)	834
BstV1I	GCAGC	2 cut(s)	810, 998
BstXI	CCANNNNNNTGG	1 cut(s)	209
BsuRI	GGCC	5 cut(s)	150, 159, 448, 530, 906
BtsCI	GGATG	3 cut(s)	33, 126, 315
BtsI	GCAGTG	1 cut(s)	948
BtsIMutI	CAGTG	2 cut(s)	896, 948
BveI	ACCTGC	1 cut(s)	781
Cac8I	GCNNGC	4 cut(s)	199, 584, 588, 650
Cfr10I	RCCGGY	1 cut(s)	241
Cfr13I	GGNCC	3 cut(s)	148, 158, 905
CseI	GACGC	1 cut(s)	99
Csp6I	GTAC	5 cut(s)	239, 319, 701, 811, 946
CviAII	CATG	6 cut(s)	50, 233, 262, 440, 621, 929
CviQI	GTAC	5 cut(s)	239, 319, 701, 811, 946
DdeI	CTNAG	3 cut(s)	297, 404, 1015
DpnI	GATC	4 cut(s)	141, 254, 783, 933
DpnII	GATC	4 cut(s)	139, 252, 781, 931
DraI	TTTAAA	1 cut(s)	1027
EciI	GGCGGA	1 cut(s)	260
Ecl136II	GAGCTC	1 cut(s)	919
Eco130I	CCWWGG	1 cut(s)	912
Eco24I	GRGCYC	2 cut(s)	125, 921
Eco53kI	GAGCTC	1 cut(s)	919
Eco57I	CTGAAG	1 cut(s)	128
Eco91I	GGTNACC	1 cut(s)	668
EcoICRI	GAGCTC	1 cut(s)	919
EcoNI	CCTNNNNNAGG	2 cut(s)	466, 722
EcoO109I	RGGNCCY	1 cut(s)	148
EcoO65I	GGTNACC	1 cut(s)	668
EcoRII	CCWGG	2 cut(s)	652, 703
EcoT14I	CCWWGG	1 cut(s)	912
EcoT38I	GRGCYC	2 cut(s)	125, 921
ErhI	CCWWGG	1 cut(s)	912
FaeI	CATG	6 cut(s)	53, 236, 265, 443, 624, 932
FaqI	GGGAC	3 cut(s)	38, 561, 1001
FatI	CATG	6 cut(s)	49, 232, 261, 439, 620, 928
FauNDI	CATATG	2 cut(s)	597, 961
FbaI	TGATCA	2 cut(s)	781, 931
FblI	GTMKAC	1 cut(s)	45
Fnu4HI	GCNGC	2 cut(s)	824, 1012
FokI	GGATG	3 cut(s)	20, 113, 322
FriOI	GRGCYC	2 cut(s)	125, 921
Fsp4HI	GCNGC	2 cut(s)	824, 1012
FspBI	CTAG	2 cut(s)	357, 509
GluI	GCNGC	2 cut(s)	824, 1012
GsuI	CTGGAG	2 cut(s)	412, 545
HaeIII	GGCC	5 cut(s)	150, 159, 448, 530, 906
HapII	CCGG	1 cut(s)	242
HgaI	GACGC	1 cut(s)	99
Hin1I	GRCGYC	1 cut(s)	102
Hin1II	CATG	6 cut(s)	53, 236, 265, 443, 624, 932
HincII	GTYRAC	1 cut(s)	46
HindII	GTYRAC	1 cut(s)	46
HindIII	AAGCTT	2 cut(s)	195, 573
HinfI	GANTC	2 cut(s)	408, 682
HpaII	CCGG	1 cut(s)	242
HphI	GGTGA	3 cut(s)	494, 791, 879
Hpy166II	GTNNAC	5 cut(s)	46, 354, 745, 841, 946
Hpy188I	TCNGA	6 cut(s)	82, 118, 172, 325, 407, 538
Hpy188III	TCNNGA	4 cut(s)	370, 425, 626, 679
Hpy8I	GTNNAC	5 cut(s)	46, 354, 745, 841, 946
Hpy99I	CGWCG	7 cut(s)	44, 47, 104, 115, 118, 260, 668
HpyAV	CCTTC	5 cut(s)	66, 342, 459, 728, 883
HpyCH4III	ACNGT	3 cut(s)	86, 668, 881
HpyCH4IV	ACGT	2 cut(s)	102, 435
HpyCH4V	TGCA	7 cut(s)	492, 553, 712, 790, 826, 896, 965
HpyF10VI	GCNNNNNNNGC	2 cut(s)	156, 520
HpyF3I	CTNAG	3 cut(s)	297, 404, 1015
HpySE526I	ACGT	2 cut(s)	102, 435
Hsp92I	GRCGYC	1 cut(s)	102
Hsp92II	CATG	6 cut(s)	53, 236, 265, 443, 624, 932
KpnI	GGTACC	1 cut(s)	242
Ksp22I	TGATCA	2 cut(s)	781, 931
Kzo9I	GATC	4 cut(s)	139, 252, 781, 931
LmnI	GCTCC	2 cut(s)	128, 916
Lsp1109I	GCAGC	2 cut(s)	810, 998
LweI	GCATC	1 cut(s)	883
MaeI	CTAG	2 cut(s)	357, 509
MaeII	ACGT	2 cut(s)	102, 435
MaeIII	GTNAC	1 cut(s)	668
MalI	GATC	4 cut(s)	141, 254, 783, 933
MboI	GATC	4 cut(s)	139, 252, 781, 931
MboII	GAAGA	4 cut(s)	134, 325, 440, 677
MhlI	GDGCHC	2 cut(s)	125, 921
MluCI	AATT	4 cut(s)	607, 858, 980, 1032
MlyI	GAGTC	1 cut(s)	402
MmeI	TCCRAC	4 cut(s)	96, 105, 205, 893
MseI	TTAA	3 cut(s)	225, 266, 1026
MspI	CCGG	1 cut(s)	242
MspR9I	CCNGG	2 cut(s)	654, 705
MssI	GTTTAAAC	1 cut(s)	1027
Mva1269I	GAATGC	1 cut(s)	1013
MvaI	CCWGG	2 cut(s)	654, 705
MwoI	GCNNNNNNNGC	2 cut(s)	156, 520
NdeI	CATATG	2 cut(s)	597, 961
NdeII	GATC	4 cut(s)	139, 252, 781, 931
NlaIII	CATG	6 cut(s)	53, 236, 265, 443, 624, 932
NlaIV	GGNNCC	3 cut(s)	124, 160, 240
NspI	RCATGY	1 cut(s)	265
NspV	TTCGAA	2 cut(s)	721, 977
PctI	GAATGC	1 cut(s)	1013
PfeI	GAWTC	1 cut(s)	682
PflFI	GACNNNGTC	1 cut(s)	50
PkrI	GCNGC	2 cut(s)	825, 1013
PleI	GAGTC	1 cut(s)	402
PmeI	GTTTAAAC	1 cut(s)	1027
PpsI	GAGTC	1 cut(s)	402
Psp124BI	GAGCTC	1 cut(s)	921
Psp6I	CCWGG	2 cut(s)	652, 703
PspEI	GGTNACC	1 cut(s)	668
PspGI	CCWGG	2 cut(s)	652, 703
PspN4I	GGNNCC	3 cut(s)	124, 160, 240
PspPI	GGNCC	3 cut(s)	148, 158, 905
PsyI	GACNNNGTC	1 cut(s)	50
RsaI	GTAC	5 cut(s)	240, 320, 702, 812, 947
RsaNI	GTAC	5 cut(s)	239, 319, 701, 811, 946
SacI	GAGCTC	1 cut(s)	921
SalI	GTCGAC	1 cut(s)	44
SaqAI	TTAA	3 cut(s)	225, 266, 1026
SatI	GCNGC	2 cut(s)	824, 1012
Sau3AI	GATC	4 cut(s)	139, 252, 781, 931
Sau96I	GGNCC	3 cut(s)	148, 158, 905
SchI	GAGTC	1 cut(s)	402
ScrFI	CCNGG	2 cut(s)	654, 705
SduI	GDGCHC	2 cut(s)	125, 921
SfaNI	GCATC	1 cut(s)	883
SfcI	CTRYAG	1 cut(s)	834
SfiI	GGCCNNNNNGGCC	1 cut(s)	156
SfuI	TTCGAA	2 cut(s)	721, 977
SpeI	ACTAGT	2 cut(s)	356, 508
Sse9I	AATT	4 cut(s)	607, 858, 980, 1032
SsiI	CCGC	2 cut(s)	245, 384
SspI	AATATT	1 cut(s)	775
SspMI	CTAG	2 cut(s)	357, 509
SstI	GAGCTC	1 cut(s)	921
StyD4I	CCNGG	2 cut(s)	652, 703
StyI	CCWWGG	1 cut(s)	912
TaaI	ACNGT	3 cut(s)	86, 668, 881
TaiI	ACGT	2 cut(s)	105, 438
TaqI	TCGA	4 cut(s)	45, 255, 721, 977
TasI	AATT	4 cut(s)	607, 858, 980, 1032
TatI	WGTACW	2 cut(s)	318, 945
TfiI	GAWTC	1 cut(s)	682
Tru1I	TTAA	3 cut(s)	225, 266, 1026
Tru9I	TTAA	3 cut(s)	225, 266, 1026
TscAI	CASTG	2 cut(s)	903, 948
TseI	GCWGC	2 cut(s)	823, 1011
TspDTI	ATGAA	2 cut(s)	326, 456
TspRI	CASTG	2 cut(s)	903, 948
Tth111I	GACNNNGTC	1 cut(s)	50
XagI	CCTNNNNNAGG	2 cut(s)	466, 722
XapI	RAATTY	3 cut(s)	858, 980, 1032
XceI	RCATGY	1 cut(s)	265
XmiI	GTMKAC	1 cut(s)	45
XspI	CTAG	2 cut(s)	357, 509
ZraI	GACGTC	1 cut(s)	103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.