Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0002796

Physical Location & Seq

Genomic Coordinates Reverse (-)

20390482 .. 20395828

Gene Structure 5347 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1090000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGGCTACACTGTTATCCGACCTTGTGTCTGGTGCAACCCATGTTCCCTCTAACTATGTCCGACCGGCACACGATCGTCCGAATCTGGACCAGGTCCAGTCCTCCGATCACTCCATTCCTCTCATCAATCTCCAAGGCCTTGAGGATTCTAGGCGCTCTGACATAATCAAACAGATAGGCCTTGCCTGCCAAGATTACGGTTTCTTTCAGGTCCAAAACCATGGAATTGAAGAGGCCGTGATCGGTAACATGCTGAGTGTATCAAAGGAGTTTTTCCATTTGCCAGAAAGTGAGAGGTTGAAGAGTTTCTCCGATGATCCACTTAAAACCACGAGGCTGTCGACGAGTTTCAATGTCAAAACTGAGGAGATCTCCAGTTGGAGAGACTACTTAAGGCTCCACTGCTACCCTCTAGAGGATTACATGCATGAATGGCCGTCCAACCCTCCATCTTTCAGAGAAGATGTGGCTGAGTATTGCAGGAATGTGAGAGGATTAGCAGTGAGACTGCTCGAAGCCATATCAGAAAGCTTAGGGTTAGAAGGGGATTACATGAACAAGGCACTGGGGAAGCATGGACAGCACATGGCAATCAATTACTATCCGACTTGTCCTCAGCCAGAGCTCACCTATGGCTTACCCGGTCATGCTGATCCTAATGTCATCACTGTTCTCCTTCAAGATGACGTGGCAGGCTTGCAGGTTCTCAACAATGGCAAATGGGTGGCTGTCAAACCCATCCCACATACTTTCATTGTCAACCTTGGTGATCAAATCCAGGTTCTTAGCAATGATCGTTACAAGAGTGTACTCCATCGGGCGGTGGTGAATTGCAACAAGGAAAGGATCTCCATCCCAACATTCTATTGCCCATCGTACGATGCCGTGATGGAACCAGCCCCACAACTGATTGATGATCGTCATCCTCCCCTCTACAGGAGCTTCACTTATGCTGAGTTCTATGAAAAATTCTGGGACCGTGGCCTTAACACTCGATCCTCTTTGGACTTGTTTAAGACCACTTCTCATTCTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

346

Amino Acids

39.21

Weight (kDa)

5.67

Isoelectric Point (pI)

48.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	39 - 148	3.2e-27	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	194 - 291	3.8e-37	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10490 AT4G10500
fragaria_vesca	FvH4_5g10430 FvH4_7g17840
malus_domestica	MD01G1090000.v1.1 MD06G1124100.v1.1 MD14G1140400.v1.1 MD14G1140700.v1.1 MD14G1141000.v1.1 MD14G1141200.v1.1
prunus_persica	Prupe.2G199700_v2.0.a1 Prupe.2G200200_v2.0.a1 Prupe.2G200200_v2.0.a1 Prupe.2G200200_v2.0.a1 Prupe.5G134500_v2.0.a1 Prupe.5G134700_v2.0.a1
pyrus_communis	pycom01g11450 pycom06g11450 pycom14g11590
rosa_chinensis	RchiOBHm_Chr1g0361261 RchiOBHm_Chr7g0187801
rosa_laevigata	RLG00000004755 RLG00000027730
rosa_multiflora	Rmu_sc0002119.1_g000038 Rmu_sc0004483.1_g000038
rosa_roxburghii	Rroxscaffold_3G00267060 Rroxscaffold_4G00295120
rosa_rugosa	Rorug01G0287700 Rorug01G0287700 Rorug02G0186700 Rorug06G0484300
rosa_samantha	Rh1AG299000 Rh1BG262900 Rh1CG280300 Rh1DG292900 Rh7CG090300 Rh7DG091900
rosa_wichuraiana	Rw1G026450 Rw7G007720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	691
AccI	GTMKAC	1 cut(s)	341
AciI	CCGC	1 cut(s)	821
AclWI	GGATC	4 cut(s)	311, 647, 854, 990
AcoI	YGGCCR	1 cut(s)	434
AcsI	RAATTY	1 cut(s)	968
AfaI	GTAC	2 cut(s)	810, 878
AfiI	CCNNNNNNNGG	3 cut(s)	415, 820, 936
AflII	CTTAAG	1 cut(s)	391
AgsI	TTSAA	4 cut(s)	230, 301, 352, 680
AhdI	GACNNNNNGTC	1 cut(s)	25
AjiI	CACGTC	1 cut(s)	688
AjnI	CCWGG	2 cut(s)	90, 777
AluBI	AGCT	3 cut(s)	531, 625, 942
AluI	AGCT	3 cut(s)	531, 625, 942
Alw21I	GWGCWC	1 cut(s)	627
Alw26I	GTCTC	2 cut(s)	378, 499
AlwI	GGATC	4 cut(s)	311, 647, 854, 990
AoxI	GGCC	5 cut(s)	136, 178, 234, 434, 982
ApoI	RAATTY	1 cut(s)	968
Asp700I	GAANNNNTTC	1 cut(s)	305
AspLEI	GCGC	1 cut(s)	156
AspS9I	GGNCC	4 cut(s)	88, 94, 211, 976
AsuC2I	CCSGG	1 cut(s)	642
AsuHPI	GGTGA	3 cut(s)	619, 779, 838
AvaII	GGWCC	4 cut(s)	88, 94, 211, 976
BanII	GRGCYC	1 cut(s)	627
BauI	CACGAG	1 cut(s)	331
Bbv12I	GWGCWC	1 cut(s)	627
BbvCI	CCTCAGC	1 cut(s)	615
BccI	CCATC	6 cut(s)	457, 746, 822, 860, 880, 883
BceAI	ACGGC	3 cut(s)	221, 421, 869
BciT130I	CCWGG	2 cut(s)	92, 779
BclI	TGATCA	1 cut(s)	769
BcnI	CCSGG	1 cut(s)	642
BcoDI	GTCTC	2 cut(s)	378, 499
BfaI	CTAG	2 cut(s)	150, 413
BfmI	CTRYAG	1 cut(s)	934
BfoI	RGCGCY	1 cut(s)	157
BfrI	CTTAAG	1 cut(s)	391
BfuAI	ACCTGC	1 cut(s)	691
BglII	AGATCT	1 cut(s)	369
Bme1390I	CCNGG	3 cut(s)	92, 642, 779
Bme18I	GGWCC	4 cut(s)	88, 94, 211, 976
BmeRI	GACNNNNNGTC	1 cut(s)	25
BmgBI	CACGTC	1 cut(s)	688
BmgT120I	GGNCC	4 cut(s)	88, 94, 211, 976
BmiI	GGNNCC	3 cut(s)	398, 894, 977
BmrFI	CCNGG	3 cut(s)	92, 642, 779
BmrI	ACTGGG	1 cut(s)	575
BmsI	GCATC	1 cut(s)	871
BmuI	ACTGGG	1 cut(s)	575
BplI	GAGNNNNNCTC	2 cut(s)	356, 388
BpmI	CTGGAG	1 cut(s)	358
Bpu10I	CCTNAGC	2 cut(s)	532, 615
BpuEI	CTTGAG	1 cut(s)	161
BpuMI	CCSGG	1 cut(s)	642
BsaBI	GATNNNNATC	2 cut(s)	851, 921
BsaJI	CCNNGG	4 cut(s)	133, 220, 763, 979
Bsc4I	CCNNNNNNNGG	3 cut(s)	415, 820, 936
Bse118I	RCCGGY	1 cut(s)	64
Bse1I	ACTGG	3 cut(s)	97, 375, 570
Bse3DI	GCAATG	1 cut(s)	796
Bse8I	GATNNNNATC	2 cut(s)	851, 921
BseBI	CCWGG	2 cut(s)	92, 779
BseDI	CCNNGG	4 cut(s)	133, 220, 763, 979
BseGI	GGATG	3 cut(s)	738, 852, 922
BseJI	GATNNNNATC	2 cut(s)	851, 921
BseLI	CCNNNNNNNGG	3 cut(s)	415, 820, 936
BseMI	GCAATG	1 cut(s)	796
BseMII	CTCAG	5 cut(s)	245, 354, 462, 629, 945
BseNI	ACTGG	3 cut(s)	97, 375, 570
BseRI	GAGGAG	1 cut(s)	380
Bsh1285I	CGRYCG	2 cut(s)	65, 76
BshFI	GGCC	5 cut(s)	138, 180, 236, 436, 984
BsiEI	CGRYCG	2 cut(s)	65, 76
BsiHKAI	GWGCWC	1 cut(s)	627
BsiSI	CCGG	2 cut(s)	65, 642
BsiWI	CGTACG	1 cut(s)	876
BslFI	GGGAC	1 cut(s)	989
BslI	CCNNNNNNNGG	3 cut(s)	415, 820, 936
BsmAI	GTCTC	2 cut(s)	378, 499
BsmFI	GGGAC	1 cut(s)	989
BsnI	GGCC	5 cut(s)	138, 180, 236, 436, 984
Bsp1286I	GDGCHC	1 cut(s)	627
Bsp19I	CCATGG	1 cut(s)	220
BspACI	CCGC	1 cut(s)	821
BspANI	GGCC	5 cut(s)	138, 180, 236, 436, 984
BspCNI	CTCAG	5 cut(s)	246, 355, 463, 628, 946
BspLI	GGNNCC	3 cut(s)	398, 894, 977
BspMI	ACCTGC	1 cut(s)	691
BspPI	GGATC	4 cut(s)	311, 647, 854, 990
BspTI	CTTAAG	1 cut(s)	391
BsrDI	GCAATG	1 cut(s)	796
BsrFI	RCCGGY	1 cut(s)	64
BsrI	ACTGG	3 cut(s)	97, 375, 570
BssAI	RCCGGY	1 cut(s)	64
BssECI	CCNNGG	4 cut(s)	133, 220, 763, 979
BssSI	CACGAG	1 cut(s)	331
BssT1I	CCWWGG	3 cut(s)	133, 220, 763
Bst2BI	CACGAG	1 cut(s)	331
Bst2UI	CCWGG	2 cut(s)	92, 779
Bst4CI	ACNGT	4 cut(s)	12, 200, 670, 980
Bst6I	CTCTTC	2 cut(s)	225, 296
BstAFI	CTTAAG	1 cut(s)	391
BstC8I	GCNNGC	3 cut(s)	187, 694, 698
BstDEI	CTNAG	7 cut(s)	254, 363, 471, 532, 615, 785, 954
BstDSI	CCRYGG	2 cut(s)	220, 979
BstF5I	GGATG	3 cut(s)	738, 852, 922
BstH2I	RGCGCY	1 cut(s)	157
BstHHI	GCGC	1 cut(s)	156
BstMAI	GTCTC	2 cut(s)	378, 499
BstMCI	CGRYCG	2 cut(s)	65, 76
BstMWI	GCNNNNNNNGC	3 cut(s)	186, 433, 580
BstNI	CCWGG	2 cut(s)	92, 779
BstNSI	RCATGY	2 cut(s)	253, 427
BstSCI	CCNGG	3 cut(s)	90, 640, 777
BstSFI	CTRYAG	1 cut(s)	934
BstX2I	RGATCY	2 cut(s)	369, 846
BstXI	CCANNNNNNTGG	1 cut(s)	221
BstYI	RGATCY	2 cut(s)	369, 846
BsuRI	GGCC	5 cut(s)	138, 180, 236, 436, 984
BtgI	CCRYGG	2 cut(s)	220, 979
BtrI	CACGTC	1 cut(s)	688
BtsCI	GGATG	3 cut(s)	738, 852, 922
BtsI	GCAGTG	2 cut(s)	400, 507
BtsIMutI	CAGTG	5 cut(s)	8, 400, 507, 563, 666
BveI	ACCTGC	1 cut(s)	691
Cac8I	GCNNGC	3 cut(s)	187, 694, 698
CfoI	GCGC	1 cut(s)	156
Cfr10I	RCCGGY	1 cut(s)	64
Cfr13I	GGNCC	4 cut(s)	88, 94, 211, 976
CsiI	ACCWGGT	1 cut(s)	90
Csp6I	GTAC	2 cut(s)	809, 877
CviAII	CATG	9 cut(s)	41, 221, 250, 424, 428, 553, 575, 586, 647
CviQI	GTAC	2 cut(s)	809, 877
DdeI	CTNAG	7 cut(s)	254, 363, 471, 532, 615, 785, 954
DriI	GACNNNNNGTC	1 cut(s)	25
EaeI	YGGCCR	1 cut(s)	434
Eam1104I	CTCTTC	2 cut(s)	225, 296
Eam1105I	GACNNNNNGTC	1 cut(s)	25
EarI	CTCTTC	2 cut(s)	225, 296
Ecl136II	GAGCTC	1 cut(s)	625
Eco130I	CCWWGG	3 cut(s)	133, 220, 763
Eco147I	AGGCCT	2 cut(s)	138, 180
Eco24I	GRGCYC	1 cut(s)	627
Eco47I	GGWCC	4 cut(s)	88, 94, 211, 976
Eco53kI	GAGCTC	1 cut(s)	625
EcoICRI	GAGCTC	1 cut(s)	625
EcoRII	CCWGG	2 cut(s)	90, 777
EcoT14I	CCWWGG	3 cut(s)	133, 220, 763
EcoT22I	ATGCAT	1 cut(s)	429
EcoT38I	GRGCYC	1 cut(s)	627
ErhI	CCWWGG	3 cut(s)	133, 220, 763
FaeI	CATG	9 cut(s)	44, 224, 253, 427, 431, 556, 578, 589, 650
FaqI	GGGAC	1 cut(s)	989
FatI	CATG	9 cut(s)	40, 220, 249, 423, 427, 552, 574, 585, 646
FbaI	TGATCA	1 cut(s)	769
FblI	GTMKAC	1 cut(s)	341
FokI	GGATG	3 cut(s)	725, 839, 909
FriOI	GRGCYC	1 cut(s)	627
FspBI	CTAG	2 cut(s)	150, 413
GlaI	GCGC	1 cut(s)	155
GsuI	CTGGAG	1 cut(s)	358
HaeII	RGCGCY	1 cut(s)	157
HaeIII	GGCC	5 cut(s)	138, 180, 236, 436, 984
HapII	CCGG	2 cut(s)	65, 642
HhaI	GCGC	1 cut(s)	156
Hin1II	CATG	9 cut(s)	44, 224, 253, 427, 431, 556, 578, 589, 650
Hin6I	GCGC	1 cut(s)	154
HinP1I	GCGC	1 cut(s)	154
HincII	GTYRAC	2 cut(s)	342, 760
HindII	GTYRAC	2 cut(s)	342, 760
HindIII	AAGCTT	1 cut(s)	529
HinfI	GANTC	2 cut(s)	82, 146
HpaII	CCGG	2 cut(s)	65, 642
HphI	GGTGA	3 cut(s)	619, 779, 838
Hpy166II	GTNNAC	3 cut(s)	342, 760, 809
Hpy188I	TCNGA	9 cut(s)	19, 62, 81, 106, 160, 313, 458, 526, 606
Hpy188III	TCNNGA	3 cut(s)	86, 413, 680
Hpy8I	GTNNAC	3 cut(s)	342, 760, 809
Hpy99I	CGWCG	1 cut(s)	346
HpyAV	CCTTC	2 cut(s)	536, 686
HpyCH4III	ACNGT	4 cut(s)	12, 200, 670, 980
HpyCH4IV	ACGT	1 cut(s)	687
HpyCH4V	TGCA	5 cut(s)	35, 427, 480, 700, 834
HpyF10VI	GCNNNNNNNGC	3 cut(s)	186, 433, 580
HpyF3I	CTNAG	7 cut(s)	254, 363, 471, 532, 615, 785, 954
HpySE526I	ACGT	1 cut(s)	687
Hsp92II	CATG	9 cut(s)	44, 224, 253, 427, 431, 556, 578, 589, 650
HspAI	GCGC	1 cut(s)	154
Ksp22I	TGATCA	1 cut(s)	769
LmnI	GCTCC	2 cut(s)	402, 939
LweI	GCATC	1 cut(s)	871
MabI	ACCWGGT	1 cut(s)	90
MaeI	CTAG	2 cut(s)	150, 413
MaeII	ACGT	1 cut(s)	687
MaeIII	GTNAC	2 cut(s)	245, 797
MboII	GAAGA	3 cut(s)	242, 313, 473
MflI	RGATCY	2 cut(s)	369, 846
MhlI	GDGCHC	1 cut(s)	627
MluCI	AATT	4 cut(s)	225, 595, 829, 968
MmeI	TCCRAC	5 cut(s)	42, 85, 359, 465, 629
Mph1103I	ATGCAT	1 cut(s)	429
MroXI	GAANNNNTTC	1 cut(s)	305
MseI	TTAA	5 cut(s)	324, 392, 987, 1014, 1036
MspCI	CTTAAG	1 cut(s)	391
MspI	CCGG	2 cut(s)	65, 642
MspR9I	CCNGG	3 cut(s)	92, 642, 779
MvaI	CCWGG	2 cut(s)	92, 779
MwoI	GCNNNNNNNGC	3 cut(s)	186, 433, 580
NciI	CCSGG	1 cut(s)	642
NcoI	CCATGG	1 cut(s)	220
NlaIII	CATG	9 cut(s)	44, 224, 253, 427, 431, 556, 578, 589, 650
NlaIV	GGNNCC	3 cut(s)	398, 894, 977
NsiI	ATGCAT	1 cut(s)	429
NspI	RCATGY	2 cut(s)	253, 427
PceI	AGGCCT	2 cut(s)	138, 180
PcsI	WCGNNNNNNNCGW	1 cut(s)	338
PdmI	GAANNNNTTC	1 cut(s)	305
PfeI	GAWTC	2 cut(s)	82, 146
Pfl23II	CGTACG	1 cut(s)	876
PflFI	GACNNNGTC	1 cut(s)	92
Ple19I	CGATCG	1 cut(s)	76
Psp124BI	GAGCTC	1 cut(s)	627
Psp6I	CCWGG	2 cut(s)	90, 777
PspGI	CCWGG	2 cut(s)	90, 777
PspLI	CGTACG	1 cut(s)	876
PspN4I	GGNNCC	3 cut(s)	398, 894, 977
PspPI	GGNCC	4 cut(s)	88, 94, 211, 976
PsuI	RGATCY	2 cut(s)	369, 846
PsyI	GACNNNGTC	1 cut(s)	92
PvuI	CGATCG	1 cut(s)	76
RsaI	GTAC	2 cut(s)	810, 878
RsaNI	GTAC	2 cut(s)	809, 877
SacI	GAGCTC	1 cut(s)	627
SalI	GTCGAC	1 cut(s)	340
SaqAI	TTAA	5 cut(s)	324, 392, 987, 1014, 1036
Sau96I	GGNCC	4 cut(s)	88, 94, 211, 976
ScrFI	CCNGG	3 cut(s)	92, 642, 779
SduI	GDGCHC	1 cut(s)	627
SexAI	ACCWGGT	1 cut(s)	90
SfaNI	GCATC	1 cut(s)	871
SfcI	CTRYAG	1 cut(s)	934
SinI	GGWCC	4 cut(s)	88, 94, 211, 976
SmlI	CTYRAG	2 cut(s)	140, 391
SmoI	CTYRAG	2 cut(s)	140, 391
Sse9I	AATT	4 cut(s)	225, 595, 829, 968
SseBI	AGGCCT	2 cut(s)	138, 180
SsiI	CCGC	1 cut(s)	821
SspMI	CTAG	2 cut(s)	150, 413
SstI	GAGCTC	1 cut(s)	627
StuI	AGGCCT	2 cut(s)	138, 180
StyD4I	CCNGG	3 cut(s)	90, 640, 777
StyI	CCWWGG	3 cut(s)	133, 220, 763
TaaI	ACNGT	4 cut(s)	12, 200, 670, 980
TaiI	ACGT	1 cut(s)	690
TaqI	TCGA	3 cut(s)	341, 513, 994
TasI	AATT	4 cut(s)	225, 595, 829, 968
TatI	WGTACW	1 cut(s)	808
TfiI	GAWTC	2 cut(s)	82, 146
Tru1I	TTAA	5 cut(s)	324, 392, 987, 1014, 1036
Tru9I	TTAA	5 cut(s)	324, 392, 987, 1014, 1036
TscAI	CASTG	5 cut(s)	15, 407, 507, 570, 673
TspDTI	ATGAA	4 cut(s)	444, 569, 742, 978
TspRI	CASTG	5 cut(s)	15, 407, 507, 570, 673
Tth111I	GACNNNGTC	1 cut(s)	92
Vha464I	CTTAAG	1 cut(s)	391
VpaK11BI	GGWCC	4 cut(s)	88, 94, 211, 976
XapI	RAATTY	1 cut(s)	968
XbaI	TCTAGA	1 cut(s)	412
XceI	RCATGY	2 cut(s)	253, 427
XmiI	GTMKAC	1 cut(s)	341
XmnI	GAANNNNTTC	1 cut(s)	305
XspI	CTAG	2 cut(s)	150, 413
Zsp2I	ATGCAT	1 cut(s)	429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.