FvH4_7g17840

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Reverse (-)
15031817 .. 15033922
2106 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g17840.t1

Sequence Viewer

Length: 1038 bp
ATGGCAGCTCCAAAGTCGGCACTCACGTCCGACCTTGTATATGGTGCAACCCATGTTCCTTCTCAATACGTCCGACCCGAACATGATCGCCCCAATCTTGGCCAGGTCATCCAGTCCGATATTTCCATTCCTCTCATCGACTTGCAAGGTTTCGACGGCTCCCGGCACTCAGAAATCATTAAGCAGATCGGCCTCGCCTGCCAAGAGTCTGGATTTTTTCAGGTTAAAAACCATGGAATCGACGAGGCAGTGATCGATAACATGTTGGCTGTGGCAAAGGAGTTCTTCCATTTGCCAGAGAGTGAAAGGATGAAGGTTTACTCTGAAGACCCTTATAGAACAATAAGACTGTCGACTAGCTTCAATGTCAGAGCTGAGGAAATAGCTAGCTGGAGAGATTACCTAAGACTCCACTGCCACCCTCTAGAGGACTACATTCATGAGTGGCCAGCCAACCCTCCCTCTTTCAGGGAAGATGTGGGTGAGTATTGCAAGGAAGTCAGAGGCCTAGCAGTGAGACTCCTTCACGGCATATCGGAAAGCCTGGGACTAGAAGAACACTACATCAACAAGGCCCTAGCAAAGCATGGACAGCACATGGCGATCAATTACTACCCGCCGTGCCCTCAGCCGGAGCTGACCTACGGCTTACCGGGACATGCTGACCCGAACGTCGTCACCCTCCTCCTCCAAGACGACGTGGAAGGCTTGCAGGTTCTCAAGGGAGGGAAATGGGTTGCTGTCAAGCCCATTCCTCACACCTTCATCGTCAACCTCGGTGACCAAATCCAGGTTATAAGCAATGATCGCTACAAGAGTGTACTCCACCGAGCGGTGGTGAACAGCAACAAGGAAAGGATCTCTATCCCGACATTCTACTGCCCATCCTACGATGCTGTGATTGAACCGGCCCCGAAACTGGTCGACGATGATCATCCTGCCGTCTACCGGAGCTTCACTTACGGTGAATTCTACGGGAATTTCTGGGACAAGGGCCCTAATAAGAATGGAACCTGTTTGGGCATATTTAAAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

346

Amino Acids

38.96

Weight (kDa)

5.79

Isoelectric Point (pI)

39.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 43 - 151 3e-29 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 198 - 295 8.2e-38 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 797
AasI GACNNNNNNGTC 1 cut(s) 671
Acc36I ACCTGC 1 cut(s) 703
AccBSI CCGCTC 1 cut(s) 833
AccI GTMKAC 3 cut(s) 353, 924, 945
AciI CCGC 2 cut(s) 617, 833
AclWI GGATC 1 cut(s) 866
AcoI YGGCCR 2 cut(s) 100, 446
AcsI RAATTY 2 cut(s) 968, 979
AcuI CTGAAG 1 cut(s) 345
AfaI GTAC 1 cut(s) 822
AfiI CCNNNNNNNGG 9 cut(s) 98, 427, 468, 631, 790, 832, 835, 919, 948
AflIII ACRYGT 1 cut(s) 261
AgsI TTSAA 2 cut(s) 364, 905
AjiI CACGTC 2 cut(s) 27, 700
AjnI CCWGG 3 cut(s) 102, 543, 789
AluBI AGCT 7 cut(s) 8, 360, 374, 386, 390, 637, 954
AluI AGCT 7 cut(s) 8, 360, 374, 386, 390, 637, 954
Alw26I GTCTC 1 cut(s) 511
AlwI GGATC 1 cut(s) 866
AoxI GGCC 7 cut(s) 100, 190, 446, 505, 573, 909, 994
ApaI GGGCCC 1 cut(s) 998
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 2 cut(s) 968, 979
AspS9I GGNCC 4 cut(s) 574, 910, 994, 995
AsuC2I CCSGG 2 cut(s) 163, 654
AsuHPI GGTGA 5 cut(s) 494, 670, 791, 850, 977
AsuNHI GCTAGC 1 cut(s) 386
BaeGI GKGCMC 2 cut(s) 626, 998
BalI TGGCCA 2 cut(s) 102, 448
BanII GRGCYC 1 cut(s) 998
BbsI GAAGAC 1 cut(s) 333
BbvCI CCTCAGC 2 cut(s) 375, 627
BbvI GCAGC 1 cut(s) 17
BccI CCATC 1 cut(s) 892
BceAI ACGGC 5 cut(s) 172, 544, 604, 661, 926
BciT130I CCWGG 3 cut(s) 104, 545, 791
BclI TGATCA 1 cut(s) 931
BcnI CCSGG 2 cut(s) 163, 654
BcoDI GTCTC 1 cut(s) 511
BfaI CTAG 6 cut(s) 357, 387, 425, 509, 551, 578
BfuAI ACCTGC 1 cut(s) 703
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme1390I CCNGG 5 cut(s) 104, 163, 545, 654, 791
BmgBI CACGTC 2 cut(s) 27, 700
BmgT120I GGNCC 4 cut(s) 574, 910, 994, 995
BmiI GGNNCC 4 cut(s) 160, 912, 996, 1012
BmrFI CCNGG 5 cut(s) 104, 163, 545, 654, 791
BmsI GCATC 1 cut(s) 883
BmtI GCTAGC 1 cut(s) 390
BpiI GAAGAC 1 cut(s) 333
BpmI CTGGAG 1 cut(s) 412
Bpu10I CCTNAGC 2 cut(s) 375, 627
BpuEI CTTGAG 1 cut(s) 704
BpuMI CCSGG 2 cut(s) 163, 654
Bsa29I ATCGAT 1 cut(s) 255
BsaBI GATNNNNATC 2 cut(s) 863, 933
BsaJI CCNNGG 3 cut(s) 232, 544, 775
BsaWI WCCGGW 1 cut(s) 948
Bsc4I CCNNNNNNNGG 9 cut(s) 98, 427, 468, 631, 790, 832, 835, 919, 948
Bse118I RCCGGY 1 cut(s) 907
Bse1I ACTGG 2 cut(s) 112, 924
Bse3DI GCAATG 1 cut(s) 808
Bse8I GATNNNNATC 2 cut(s) 863, 933
BseBI CCWGG 3 cut(s) 104, 545, 791
BseCI ATCGAT 1 cut(s) 255
BseDI CCNNGG 3 cut(s) 232, 544, 775
BseGI GGATG 4 cut(s) 108, 315, 884, 934
BseJI GATNNNNATC 2 cut(s) 863, 933
BseLI CCNNNNNNNGG 9 cut(s) 98, 427, 468, 631, 790, 832, 835, 919, 948
BseMI GCAATG 1 cut(s) 808
BseMII CTCAG 3 cut(s) 183, 366, 641
BseNI ACTGG 2 cut(s) 112, 924
BseRI GAGGAG 2 cut(s) 674, 677
BseSI GKGCMC 2 cut(s) 626, 998
BseXI GCAGC 1 cut(s) 17
BshFI GGCC 7 cut(s) 102, 192, 448, 507, 575, 911, 996
BshVI ATCGAT 1 cut(s) 255
BsiSI CCGG 5 cut(s) 163, 632, 653, 908, 949
BslFI GGGAC 3 cut(s) 561, 669, 1001
BslI CCNNNNNNNGG 9 cut(s) 98, 427, 468, 631, 790, 832, 835, 919, 948
BsmAI GTCTC 1 cut(s) 511
BsmFI GGGAC 3 cut(s) 561, 669, 1001
BsnI GGCC 7 cut(s) 102, 192, 448, 507, 575, 911, 996
Bsp120I GGGCCC 1 cut(s) 994
Bsp1286I GDGCHC 2 cut(s) 626, 998
Bsp143I GATC 7 cut(s) 85, 186, 252, 603, 805, 858, 931
Bsp19I CCATGG 1 cut(s) 232
BspACI CCGC 2 cut(s) 617, 833
BspANI GGCC 7 cut(s) 102, 192, 448, 507, 575, 911, 996
BspCNI CTCAG 3 cut(s) 182, 367, 640
BspDI ATCGAT 1 cut(s) 255
BspHI TCATGA 1 cut(s) 439
BspLI GGNNCC 4 cut(s) 160, 912, 996, 1012
BspMI ACCTGC 1 cut(s) 703
BspOI GCTAGC 1 cut(s) 390
BspPI GGATC 1 cut(s) 866
BsrBI CCGCTC 1 cut(s) 833
BsrDI GCAATG 1 cut(s) 808
BsrFI RCCGGY 1 cut(s) 907
BsrI ACTGG 2 cut(s) 112, 924
BssAI RCCGGY 1 cut(s) 907
BssECI CCNNGG 3 cut(s) 232, 544, 775
BssMI GATC 7 cut(s) 85, 186, 252, 603, 805, 858, 931
BssT1I CCWWGG 1 cut(s) 232
Bst2UI CCWGG 3 cut(s) 104, 545, 791
Bst4CI ACNGT 2 cut(s) 351, 965
BstC8I GCNNGC 4 cut(s) 199, 388, 450, 710
BstDEI CTNAG 4 cut(s) 169, 375, 404, 627
BstDSI CCRYGG 1 cut(s) 232
BstEII GGTNACC 1 cut(s) 779
BstENI CCTNNNNNAGG 1 cut(s) 466
BstF5I GGATG 4 cut(s) 108, 315, 884, 934
BstKTI GATC 7 cut(s) 88, 189, 255, 606, 808, 861, 934
BstMAI GTCTC 1 cut(s) 511
BstMBI GATC 7 cut(s) 85, 186, 252, 603, 805, 858, 931
BstMWI GCNNNNNNNGC 3 cut(s) 198, 592, 807
BstNI CCWGG 3 cut(s) 104, 545, 791
BstNSI RCATGY 2 cut(s) 265, 662
BstPI GGTNACC 1 cut(s) 779
BstSCI CCNGG 5 cut(s) 102, 161, 543, 652, 789
BstSLI GKGCMC 2 cut(s) 626, 998
BstV1I GCAGC 1 cut(s) 17
BstV2I GAAGAC 1 cut(s) 333
BstX2I RGATCY 1 cut(s) 858
BstXI CCANNNNNNTGG 1 cut(s) 209
BstYI RGATCY 1 cut(s) 858
Bsu15I ATCGAT 1 cut(s) 255
BsuRI GGCC 7 cut(s) 102, 192, 448, 507, 575, 911, 996
BsuTUI ATCGAT 1 cut(s) 255
BtgI CCRYGG 1 cut(s) 232
BtrI CACGTC 2 cut(s) 27, 700
BtsCI GGATG 4 cut(s) 108, 315, 884, 934
BtsI GCAGTG 3 cut(s) 255, 412, 519
BtsIMutI CAGTG 3 cut(s) 255, 412, 519
BveI ACCTGC 1 cut(s) 703
Cac8I GCNNGC 4 cut(s) 199, 388, 450, 710
CciI TCATGA 1 cut(s) 439
Cfr10I RCCGGY 1 cut(s) 907
Cfr13I GGNCC 4 cut(s) 574, 910, 994, 995
ClaI ATCGAT 1 cut(s) 255
Csp6I GTAC 1 cut(s) 821
CviAII CATG 8 cut(s) 53, 83, 233, 262, 440, 587, 598, 659
CviQI GTAC 1 cut(s) 821
DdeI CTNAG 4 cut(s) 169, 375, 404, 627
DpnI GATC 7 cut(s) 87, 188, 254, 605, 807, 860, 933
DpnII GATC 7 cut(s) 85, 186, 252, 603, 805, 858, 931
DraI TTTAAA 1 cut(s) 1030
DrdI GACNNNNNNGTC 1 cut(s) 671
DseDI GACNNNNNNGTC 1 cut(s) 671
EaeI YGGCCR 2 cut(s) 100, 446
Eco130I CCWWGG 1 cut(s) 232
Eco147I AGGCCT 1 cut(s) 507
Eco24I GRGCYC 1 cut(s) 998
Eco57I CTGAAG 1 cut(s) 345
Eco91I GGTNACC 1 cut(s) 779
EcoNI CCTNNNNNAGG 1 cut(s) 466
EcoO109I RGGNCCY 3 cut(s) 574, 994, 995
EcoO65I GGTNACC 1 cut(s) 779
EcoRI GAATTC 1 cut(s) 968
EcoRII CCWGG 3 cut(s) 102, 543, 789
EcoT14I CCWWGG 1 cut(s) 232
EcoT38I GRGCYC 1 cut(s) 998
ErhI CCWWGG 1 cut(s) 232
FaeI CATG 8 cut(s) 56, 86, 236, 265, 443, 590, 601, 662
FalI AAGNNNNNCTT 2 cut(s) 269, 301
FaqI GGGAC 3 cut(s) 561, 669, 1001
FatI CATG 8 cut(s) 52, 82, 232, 261, 439, 586, 597, 658
FauI CCCGC 1 cut(s) 624
FbaI TGATCA 1 cut(s) 931
FblI GTMKAC 3 cut(s) 353, 924, 945
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 4 cut(s) 95, 322, 871, 921
FriOI GRGCYC 1 cut(s) 998
Fsp4HI GCNGC 1 cut(s) 6
FspBI CTAG 6 cut(s) 357, 387, 425, 509, 551, 578
GluI GCNGC 1 cut(s) 6
GsuI CTGGAG 1 cut(s) 412
HaeIII GGCC 7 cut(s) 102, 192, 448, 507, 575, 911, 996
HapII CCGG 5 cut(s) 163, 632, 653, 908, 949
Hin1II CATG 8 cut(s) 56, 86, 236, 265, 443, 590, 601, 662
HincII GTYRAC 3 cut(s) 354, 772, 925
HindII GTYRAC 3 cut(s) 354, 772, 925
HinfI GANTC 4 cut(s) 206, 237, 408, 519
HpaII CCGG 5 cut(s) 163, 632, 653, 908, 949
HphI GGTGA 5 cut(s) 494, 670, 791, 850, 977
Hpy166II GTNNAC 7 cut(s) 319, 354, 772, 821, 841, 925, 946
Hpy188I TCNGA 8 cut(s) 31, 74, 118, 172, 325, 371, 503, 538
Hpy188III TCNNGA 4 cut(s) 210, 425, 440, 868
Hpy8I GTNNAC 7 cut(s) 319, 354, 772, 821, 841, 925, 946
Hpy99I CGWCG 5 cut(s) 158, 245, 677, 701, 929
HpyAV CCTTC 5 cut(s) 69, 307, 533, 698, 772
HpyCH4III ACNGT 2 cut(s) 351, 965
HpyCH4IV ACGT 4 cut(s) 26, 69, 672, 699
HpyCH4V TGCA 4 cut(s) 47, 145, 492, 712
HpyF10VI GCNNNNNNNGC 3 cut(s) 198, 592, 807
HpyF3I CTNAG 4 cut(s) 169, 375, 404, 627
HpySE526I ACGT 4 cut(s) 26, 69, 672, 699
Hsp92II CATG 8 cut(s) 56, 86, 236, 265, 443, 590, 601, 662
Ksp22I TGATCA 1 cut(s) 931
Kzo9I GATC 7 cut(s) 85, 186, 252, 603, 805, 858, 931
LmnI GCTCC 4 cut(s) 13, 164, 634, 951
Lsp1109I GCAGC 1 cut(s) 17
LweI GCATC 1 cut(s) 883
MaeI CTAG 6 cut(s) 357, 387, 425, 509, 551, 578
MaeII ACGT 4 cut(s) 26, 69, 672, 699
MaeIII GTNAC 2 cut(s) 676, 779
MalI GATC 7 cut(s) 87, 188, 254, 605, 807, 860, 933
MbiI CCGCTC 1 cut(s) 833
MboI GATC 7 cut(s) 85, 186, 252, 603, 805, 858, 931
MboII GAAGA 4 cut(s) 277, 338, 485, 566
MflI RGATCY 1 cut(s) 858
MhlI GDGCHC 2 cut(s) 626, 998
MlsI TGGCCA 2 cut(s) 102, 448
MluCI AATT 4 cut(s) 607, 968, 979, 1033
MluNI TGGCCA 2 cut(s) 102, 448
MlyI GAGTC 3 cut(s) 215, 402, 513
MmeI TCCRAC 2 cut(s) 54, 97
Mox20I TGGCCA 2 cut(s) 102, 448
MscI TGGCCA 2 cut(s) 102, 448
MseI TTAA 3 cut(s) 180, 225, 1029
Msp20I TGGCCA 2 cut(s) 102, 448
MspI CCGG 5 cut(s) 163, 632, 653, 908, 949
MspR9I CCNGG 5 cut(s) 104, 163, 545, 654, 791
MvaI CCWGG 3 cut(s) 104, 545, 791
MwoI GCNNNNNNNGC 3 cut(s) 198, 592, 807
NciI CCSGG 2 cut(s) 163, 654
NcoI CCATGG 1 cut(s) 232
NdeII GATC 7 cut(s) 85, 186, 252, 603, 805, 858, 931
NheI GCTAGC 1 cut(s) 386
NlaIII CATG 8 cut(s) 56, 86, 236, 265, 443, 590, 601, 662
NlaIV GGNNCC 4 cut(s) 160, 912, 996, 1012
NmuCI GTSAC 2 cut(s) 676, 779
NspI RCATGY 2 cut(s) 265, 662
PagI TCATGA 1 cut(s) 439
PceI AGGCCT 1 cut(s) 507
PciI ACATGT 1 cut(s) 261
PcsI WCGNNNNNNNCGW 2 cut(s) 23, 75
PfeI GAWTC 1 cut(s) 237
PkrI GCNGC 1 cut(s) 7
PleI GAGTC 3 cut(s) 214, 402, 513
PpsI GAGTC 3 cut(s) 214, 402, 513
PscI ACATGT 1 cut(s) 261
PsiI TTATAA 1 cut(s) 797
Psp6I CCWGG 3 cut(s) 102, 543, 789
PspEI GGTNACC 1 cut(s) 779
PspGI CCWGG 3 cut(s) 102, 543, 789
PspN4I GGNNCC 4 cut(s) 160, 912, 996, 1012
PspOMI GGGCCC 1 cut(s) 994
PspPI GGNCC 4 cut(s) 574, 910, 994, 995
PsuI RGATCY 1 cut(s) 858
RsaI GTAC 1 cut(s) 822
RsaNI GTAC 1 cut(s) 821
SalI GTCGAC 2 cut(s) 352, 923
SaqAI TTAA 3 cut(s) 180, 225, 1029
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 7 cut(s) 85, 186, 252, 603, 805, 858, 931
Sau96I GGNCC 4 cut(s) 574, 910, 994, 995
SchI GAGTC 3 cut(s) 215, 402, 513
ScrFI CCNGG 5 cut(s) 104, 163, 545, 654, 791
SduI GDGCHC 2 cut(s) 626, 998
SfaNI GCATC 1 cut(s) 883
SmlI CTYRAG 1 cut(s) 719
SmoI CTYRAG 1 cut(s) 719
Sse9I AATT 4 cut(s) 607, 968, 979, 1033
SseBI AGGCCT 1 cut(s) 507
SsiI CCGC 2 cut(s) 617, 833
SspMI CTAG 6 cut(s) 357, 387, 425, 509, 551, 578
StuI AGGCCT 1 cut(s) 507
StyD4I CCNGG 5 cut(s) 102, 161, 543, 652, 789
StyI CCWWGG 1 cut(s) 232
TaaI ACNGT 2 cut(s) 351, 965
TaiI ACGT 4 cut(s) 29, 72, 675, 702
TaqI TCGA 6 cut(s) 138, 153, 240, 255, 353, 924
TasI AATT 4 cut(s) 607, 968, 979, 1033
TatI WGTACW 1 cut(s) 820
TfiI GAWTC 1 cut(s) 237
Tru1I TTAA 3 cut(s) 180, 225, 1029
Tru9I TTAA 3 cut(s) 180, 225, 1029
TscAI CASTG 3 cut(s) 255, 419, 519
TseFI GTSAC 2 cut(s) 676, 779
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 2 cut(s) 676, 779
TspDTI ATGAA 3 cut(s) 326, 428, 754
TspRI CASTG 3 cut(s) 255, 419, 519
XagI CCTNNNNNAGG 1 cut(s) 466
XapI RAATTY 2 cut(s) 968, 979
XbaI TCTAGA 1 cut(s) 424
XceI RCATGY 2 cut(s) 265, 662
XmiI GTMKAC 3 cut(s) 353, 924, 945
XspI CTAG 6 cut(s) 357, 387, 425, 509, 551, 578
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.