Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0002796

Physical Location & Seq

Genomic Coordinates Reverse (-)

39593855 .. 39596696

Gene Structure 2842 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG262900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGCACCTCCAAATTCAGCACTCATATCCGACCTTGTATCTGGTGCAACCCATGTTCCTTCTCAATTCGTCCGACCCGAACATGATCGTCCCAATCTTGACCAGGTCATTCAGTCCTCTGATATGTCCATTCCTCTCATCGACCTCCAAGATTTCGACGGCTCACGGCGCTCAGAAATCATTAAGCAGATCGGCCTTGCCTGCCAAGACTATGGCTTTTTTCAGGTTAAAAACCATGGAATTAACGAGGCAGTGATCGATAACTTGTTGGCTGTGGCAAAGGAGTTTTTCCATTTGCCAGAGAGTGAAAGGATGAAGGTTTACTCTGAAGACCCTTATAAGACCATAAGACTGTCGACTAGCTTCAATGTCAGAGTTGAGGAAGTATCCTGCTGGAGAGATTACCTAAGACTCCACTGCCACCCTCTAGAGGATTACATTCATGAGTGGCCAGCCAACCCTCCCTCTTTCAGGGAAGATGTGGCAGAGTATTGCAAGAAAGTCAGAGGCCTTGCAGTGAGACTCCTTCAAGGCATATCTGAAAGCCTGGGACTGGAACGAGACTACATCAACAAGGCCCTAGCAAAGCATGGGCAGCACATGGCGATCAATTACTATCCACCATGCCCTCAGCCAGAGCTGACCTACGGCTTACCCGGGCATGCTGACCCGAACGTTATCACCCTCCTCCTCCAGGACGACGTGGGAGGCTTGCAGGTTCTCAAGGGCGGGAAATGGGTTGCTGTCAAGCCCATTCCTCACACCTTCATCGTCAACCTCGGCGACCAAATGCAGGTCAGAACTAGAAACTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

271

Amino Acids

30.65

Weight (kDa)

5.87

Isoelectric Point (pI)

47.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	44 - 152	6.3e-30	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	199 - 268	7.3e-25	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10490 AT4G10500
fragaria_vesca	FvH4_5g10430 FvH4_7g17840
malus_domestica	MD01G1090000.v1.1 MD06G1124100.v1.1 MD14G1140400.v1.1 MD14G1140700.v1.1 MD14G1141000.v1.1 MD14G1141200.v1.1
prunus_persica	Prupe.2G199700_v2.0.a1 Prupe.2G200200_v2.0.a1 Prupe.2G200200_v2.0.a1 Prupe.2G200200_v2.0.a1 Prupe.5G134500_v2.0.a1 Prupe.5G134700_v2.0.a1
pyrus_communis	pycom01g11450 pycom06g11450 pycom14g11590
rosa_chinensis	RchiOBHm_Chr1g0361261 RchiOBHm_Chr7g0187801
rosa_laevigata	RLG00000004755 RLG00000027730
rosa_multiflora	Rmu_sc0002119.1_g000038 Rmu_sc0004483.1_g000038
rosa_roxburghii	Rroxscaffold_3G00267060 Rroxscaffold_4G00295120
rosa_rugosa	Rorug01G0287700 Rorug01G0287700 Rorug02G0186700 Rorug06G0484300
rosa_samantha	Rh1AG299000 Rh1BG262900 Rh1CG280300 Rh1DG292900 Rh7CG090300 Rh7DG091900
rosa_wichuraiana	Rw1G026450 Rw7G007720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	339
Acc36I	ACCTGC	2 cut(s)	706, 784
AccB1I	GGYRCC	1 cut(s)	4
AccI	GTMKAC	1 cut(s)	356
AciI	CCGC	1 cut(s)	729
AclI	AACGTT	1 cut(s)	675
AcoI	YGGCCR	1 cut(s)	449
AcsI	RAATTY	1 cut(s)	13
AcuI	CTGAAG	1 cut(s)	348
AfiI	CCNNNNNNNGG	5 cut(s)	430, 471, 553, 694, 793
AgsI	TTSAA	2 cut(s)	367, 530
AjiI	CACGTC	1 cut(s)	703
AjnI	CCWGG	3 cut(s)	102, 546, 693
AluBI	AGCT	2 cut(s)	363, 640
AluI	AGCT	2 cut(s)	363, 640
Alw26I	GTCTC	2 cut(s)	514, 555
Ama87I	CYCGRG	1 cut(s)	656
AoxI	GGCC	4 cut(s)	193, 449, 508, 576
ApeKI	GCWGC	1 cut(s)	595
ApoI	RAATTY	1 cut(s)	13
AspLEI	GCGC	1 cut(s)	171
AspS9I	GGNCC	1 cut(s)	577
AsuC2I	CCSGG	2 cut(s)	657, 658
AsuHPI	GGTGA	1 cut(s)	673
AvaI	CYCGRG	1 cut(s)	656
BalI	TGGCCA	1 cut(s)	451
BanI	GGYRCC	1 cut(s)	4
BbsI	GAAGAC	1 cut(s)	336
BbvCI	CCTCAGC	1 cut(s)	630
BbvI	GCAGC	1 cut(s)	607
BceAI	ACGGC	3 cut(s)	175, 182, 664
BciT130I	CCWGG	3 cut(s)	104, 548, 695
BciVI	GTATCC	1 cut(s)	397
BcnI	CCSGG	2 cut(s)	657, 658
BcoDI	GTCTC	2 cut(s)	514, 555
BfaI	CTAG	4 cut(s)	360, 428, 581, 804
BfoI	RGCGCY	1 cut(s)	172
BfuAI	ACCTGC	2 cut(s)	706, 784
BfuI	GTATCC	1 cut(s)	397
BisI	GCNGC	1 cut(s)	596
BlsI	GCNGC	1 cut(s)	597
Bme1390I	CCNGG	5 cut(s)	104, 548, 657, 658, 695
BmeT110I	CYCGRG	1 cut(s)	656
BmgBI	CACGTC	1 cut(s)	703
BmgT120I	GGNCC	1 cut(s)	577
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	5 cut(s)	104, 548, 657, 658, 695
BpiI	GAAGAC	1 cut(s)	336
BpmI	CTGGAG	2 cut(s)	415, 677
Bpu10I	CCTNAGC	1 cut(s)	630
BpuEI	CTTGAG	1 cut(s)	707
BpuMI	CCSGG	2 cut(s)	657, 658
Bsa29I	ATCGAT	1 cut(s)	258
BsaJI	CCNNGG	4 cut(s)	235, 547, 656, 778
Bsc4I	CCNNNNNNNGG	5 cut(s)	430, 471, 553, 694, 793
Bse1I	ACTGG	1 cut(s)	558
BseBI	CCWGG	3 cut(s)	104, 548, 695
BseCI	ATCGAT	1 cut(s)	258
BseDI	CCNNGG	4 cut(s)	235, 547, 656, 778
BseGI	GGATG	1 cut(s)	318
BseLI	CCNNNNNNNGG	5 cut(s)	430, 471, 553, 694, 793
BseMII	CTCAG	2 cut(s)	186, 644
BseNI	ACTGG	1 cut(s)	558
BseRI	GAGGAG	2 cut(s)	677, 680
BseXI	GCAGC	1 cut(s)	607
BshFI	GGCC	4 cut(s)	195, 451, 510, 578
BshNI	GGYRCC	1 cut(s)	4
BshVI	ATCGAT	1 cut(s)	258
BsiHKCI	CYCGRG	1 cut(s)	656
BsiSI	CCGG	1 cut(s)	657
BslFI	GGGAC	2 cut(s)	75, 564
BslI	CCNNNNNNNGG	5 cut(s)	430, 471, 553, 694, 793
BsmAI	GTCTC	2 cut(s)	514, 555
BsmFI	GGGAC	2 cut(s)	75, 564
BsnI	GGCC	4 cut(s)	195, 451, 510, 578
BsoBI	CYCGRG	1 cut(s)	656
Bsp143I	GATC	4 cut(s)	85, 189, 255, 606
Bsp19I	CCATGG	1 cut(s)	235
BspACI	CCGC	1 cut(s)	729
BspANI	GGCC	4 cut(s)	195, 451, 510, 578
BspCNI	CTCAG	2 cut(s)	185, 643
BspDI	ATCGAT	1 cut(s)	258
BspHI	TCATGA	1 cut(s)	442
BspLI	GGNNCC	1 cut(s)	6
BspMI	ACCTGC	2 cut(s)	706, 784
BspT107I	GGYRCC	1 cut(s)	4
BsrI	ACTGG	1 cut(s)	558
BssECI	CCNNGG	4 cut(s)	235, 547, 656, 778
BssMI	GATC	4 cut(s)	85, 189, 255, 606
BssT1I	CCWWGG	1 cut(s)	235
Bst2UI	CCWGG	3 cut(s)	104, 548, 695
Bst4CI	ACNGT	1 cut(s)	354
BstC8I	GCNNGC	4 cut(s)	202, 453, 663, 713
BstDEI	CTNAG	3 cut(s)	172, 407, 630
BstDSI	CCRYGG	1 cut(s)	235
BstENI	CCTNNNNNAGG	2 cut(s)	469, 692
BstF5I	GGATG	1 cut(s)	318
BstH2I	RGCGCY	1 cut(s)	172
BstHHI	GCGC	1 cut(s)	171
BstKTI	GATC	4 cut(s)	88, 192, 258, 609
BstMAI	GTCTC	2 cut(s)	514, 555
BstMBI	GATC	4 cut(s)	85, 189, 255, 606
BstMWI	GCNNNNNNNGC	3 cut(s)	168, 201, 595
BstNI	CCWGG	3 cut(s)	104, 548, 695
BstNSI	RCATGY	1 cut(s)	665
BstSCI	CCNGG	5 cut(s)	102, 546, 655, 656, 693
BstV1I	GCAGC	1 cut(s)	607
BstV2I	GAAGAC	1 cut(s)	336
BstXI	CCANNNNNNTGG	1 cut(s)	212
Bsu15I	ATCGAT	1 cut(s)	258
BsuI	GTATCC	1 cut(s)	397
BsuRI	GGCC	4 cut(s)	195, 451, 510, 578
BsuTUI	ATCGAT	1 cut(s)	258
BtgI	CCRYGG	1 cut(s)	235
BtrI	CACGTC	1 cut(s)	703
BtsCI	GGATG	1 cut(s)	318
BtsI	GCAGTG	3 cut(s)	258, 415, 522
BtsIMutI	CAGTG	3 cut(s)	258, 415, 522
BveI	ACCTGC	2 cut(s)	706, 784
Cac8I	GCNNGC	4 cut(s)	202, 453, 663, 713
CciI	TCATGA	1 cut(s)	442
CfoI	GCGC	1 cut(s)	171
Cfr13I	GGNCC	1 cut(s)	577
Cfr9I	CCCGGG	1 cut(s)	656
ClaI	ATCGAT	1 cut(s)	258
CsiI	ACCWGGT	1 cut(s)	102
CviAII	CATG	8 cut(s)	53, 83, 236, 443, 590, 601, 624, 662
DdeI	CTNAG	3 cut(s)	172, 407, 630
DpnI	GATC	4 cut(s)	87, 191, 257, 608
DpnII	GATC	4 cut(s)	85, 189, 255, 606
EaeI	YGGCCR	1 cut(s)	449
Eco130I	CCWWGG	1 cut(s)	235
Eco147I	AGGCCT	1 cut(s)	510
Eco57I	CTGAAG	1 cut(s)	348
Eco88I	CYCGRG	1 cut(s)	656
EcoNI	CCTNNNNNAGG	2 cut(s)	469, 692
EcoO109I	RGGNCCY	1 cut(s)	577
EcoRII	CCWGG	3 cut(s)	102, 546, 693
EcoT14I	CCWWGG	1 cut(s)	235
ErhI	CCWWGG	1 cut(s)	235
FaeI	CATG	8 cut(s)	56, 86, 239, 446, 593, 604, 627, 665
FaqI	GGGAC	2 cut(s)	75, 564
FatI	CATG	8 cut(s)	52, 82, 235, 442, 589, 600, 623, 661
FauI	CCCGC	1 cut(s)	722
FblI	GTMKAC	1 cut(s)	356
Fnu4HI	GCNGC	1 cut(s)	596
FokI	GGATG	1 cut(s)	325
Fsp4HI	GCNGC	1 cut(s)	596
FspBI	CTAG	4 cut(s)	360, 428, 581, 804
GlaI	GCGC	1 cut(s)	170
GluI	GCNGC	1 cut(s)	596
GsuI	CTGGAG	2 cut(s)	415, 677
HaeII	RGCGCY	1 cut(s)	172
HaeIII	GGCC	4 cut(s)	195, 451, 510, 578
HapII	CCGG	1 cut(s)	657
HhaI	GCGC	1 cut(s)	171
Hin1II	CATG	8 cut(s)	56, 86, 239, 446, 593, 604, 627, 665
Hin6I	GCGC	1 cut(s)	169
HinP1I	GCGC	1 cut(s)	169
HincII	GTYRAC	2 cut(s)	357, 775
HindII	GTYRAC	2 cut(s)	357, 775
HinfI	GANTC	2 cut(s)	411, 522
HpaII	CCGG	1 cut(s)	657
HphI	GGTGA	1 cut(s)	673
Hpy166II	GTNNAC	3 cut(s)	322, 357, 775
Hpy188I	TCNGA	9 cut(s)	31, 74, 121, 175, 328, 374, 506, 541, 800
Hpy188III	TCNNGA	3 cut(s)	98, 428, 443
Hpy8I	GTNNAC	3 cut(s)	322, 357, 775
Hpy99I	CGWCG	2 cut(s)	161, 704
HpyAV	CCTTC	4 cut(s)	69, 310, 536, 775
HpyCH4III	ACNGT	1 cut(s)	354
HpyCH4IV	ACGT	2 cut(s)	675, 702
HpyCH4V	TGCA	5 cut(s)	47, 495, 515, 715, 793
HpyF10VI	GCNNNNNNNGC	3 cut(s)	168, 201, 595
HpyF3I	CTNAG	3 cut(s)	172, 407, 630
HpySE526I	ACGT	2 cut(s)	675, 702
Hsp92II	CATG	8 cut(s)	56, 86, 239, 446, 593, 604, 627, 665
HspAI	GCGC	1 cut(s)	169
Kzo9I	GATC	4 cut(s)	85, 189, 255, 606
Lsp1109I	GCAGC	1 cut(s)	607
MabI	ACCWGGT	1 cut(s)	102
MaeI	CTAG	4 cut(s)	360, 428, 581, 804
MaeII	ACGT	2 cut(s)	675, 702
MalI	GATC	4 cut(s)	87, 191, 257, 608
MboI	GATC	4 cut(s)	85, 189, 255, 606
MboII	GAAGA	2 cut(s)	341, 488
MlsI	TGGCCA	1 cut(s)	451
MluCI	AATT	4 cut(s)	13, 65, 240, 610
MluNI	TGGCCA	1 cut(s)	451
MlyI	GAGTC	2 cut(s)	405, 516
MmeI	TCCRAC	2 cut(s)	54, 97
Mox20I	TGGCCA	1 cut(s)	451
MscI	TGGCCA	1 cut(s)	451
MseI	TTAA	3 cut(s)	183, 228, 243
Msp20I	TGGCCA	1 cut(s)	451
MspI	CCGG	1 cut(s)	657
MspR9I	CCNGG	5 cut(s)	104, 548, 657, 658, 695
MvaI	CCWGG	3 cut(s)	104, 548, 695
MwoI	GCNNNNNNNGC	3 cut(s)	168, 201, 595
NciI	CCSGG	2 cut(s)	657, 658
NcoI	CCATGG	1 cut(s)	235
NdeII	GATC	4 cut(s)	85, 189, 255, 606
NlaIII	CATG	8 cut(s)	56, 86, 239, 446, 593, 604, 627, 665
NlaIV	GGNNCC	1 cut(s)	6
NmeAIII	GCCGAG	1 cut(s)	759
NspI	RCATGY	1 cut(s)	665
PaeI	GCATGC	1 cut(s)	665
PagI	TCATGA	1 cut(s)	442
PceI	AGGCCT	1 cut(s)	510
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PflFI	GACNNNGTC	1 cut(s)	104
PfoI	TCCNGGA	1 cut(s)	693
PkrI	GCNGC	1 cut(s)	597
PleI	GAGTC	2 cut(s)	405, 516
PpsI	GAGTC	2 cut(s)	405, 516
PsiI	TTATAA	1 cut(s)	339
Psp1406I	AACGTT	1 cut(s)	675
Psp6I	CCWGG	3 cut(s)	102, 546, 693
PspGI	CCWGG	3 cut(s)	102, 546, 693
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	577
PsyI	GACNNNGTC	1 cut(s)	104
SalI	GTCGAC	1 cut(s)	355
SaqAI	TTAA	3 cut(s)	183, 228, 243
SatI	GCNGC	1 cut(s)	596
Sau3AI	GATC	4 cut(s)	85, 189, 255, 606
Sau96I	GGNCC	1 cut(s)	577
SchI	GAGTC	2 cut(s)	405, 516
ScrFI	CCNGG	5 cut(s)	104, 548, 657, 658, 695
SexAI	ACCWGGT	1 cut(s)	102
SmaI	CCCGGG	1 cut(s)	658
SmlI	CTYRAG	1 cut(s)	722
SmoI	CTYRAG	1 cut(s)	722
SphI	GCATGC	1 cut(s)	665
Sse9I	AATT	4 cut(s)	13, 65, 240, 610
SseBI	AGGCCT	1 cut(s)	510
SsiI	CCGC	1 cut(s)	729
SspMI	CTAG	4 cut(s)	360, 428, 581, 804
StuI	AGGCCT	1 cut(s)	510
StyD4I	CCNGG	5 cut(s)	102, 546, 655, 656, 693
StyI	CCWWGG	1 cut(s)	235
TaaI	ACNGT	1 cut(s)	354
TaiI	ACGT	2 cut(s)	678, 705
TaqI	TCGA	4 cut(s)	141, 156, 258, 356
TasI	AATT	4 cut(s)	13, 65, 240, 610
Tru1I	TTAA	3 cut(s)	183, 228, 243
Tru9I	TTAA	3 cut(s)	183, 228, 243
TscAI	CASTG	3 cut(s)	258, 422, 522
TseI	GCWGC	1 cut(s)	595
TspDTI	ATGAA	3 cut(s)	329, 431, 757
TspMI	CCCGGG	1 cut(s)	656
TspRI	CASTG	3 cut(s)	258, 422, 522
Tth111I	GACNNNGTC	1 cut(s)	104
XagI	CCTNNNNNAGG	2 cut(s)	469, 692
XapI	RAATTY	1 cut(s)	13
XbaI	TCTAGA	1 cut(s)	427
XceI	RCATGY	1 cut(s)	665
XmaI	CCCGGG	1 cut(s)	656
XmiI	GTMKAC	1 cut(s)	356
XspI	CTAG	4 cut(s)	360, 428, 581, 804

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.