AtPRD1,PRD1
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G14180 AT4G14180 |
| fragaria_vesca | FvH4_4g12860 |
| malus_domestica | MD04G1022200.v1.1 |
| prunus_persica | Prupe.1G172400_v2.0.a1 Prupe.1G176200_v2.0.a1 |
| pyrus_communis | pycom04g01870 |
| rosa_chinensis | RchiOBHm_Chr4g0412451 RchiOBHm_Chr4g0412511 |
| rosa_laevigata | RLG00000008284 RLG00000008287 RLG00000008289 RLG00000008295 RLG00000008298 |
| rosa_multiflora | Rmu_sc0002604.1_g000020 Rmu_sc0003914.1_g000006 Rmu_sc0005615.1_g000012 |
| rosa_roxburghii | Rroxscaffold_161G00448090 Rroxscaffold_2G00117420 Rroxscaffold_4G00325160 Rroxscaffold_5G00356600 Rroxscaffold_5G00356610 Rroxscaffold_5G00356660 Rroxscaffold_5G00356680 Rroxscaffold_5G00356720 Rroxscaffold_7G00197050 |
| rosa_rugosa | Rorug04G0103300 Rorug04G0103400 Rorug04G0103700.1 |
| rosa_samantha | Rh4AG173200 Rh4AG173600 Rh4BG173100 Rh4CG184000 Rh4CG184500 Rh4DG167600 Rh4DG168300 Rh4DG168400 Rh4DG168900 |
| rosa_wichuraiana | Rw4G014490 Rw4G014550 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 3132 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 349, 1418, 3408 |
| AccI | GTMKAC | 2 cut(s) | 1527, 3089 |
| AccII | CGCG | 2 cut(s) | 126, 212 |
| AccIII | TCCGGA | 1 cut(s) | 1360 |
| AciI | CCGC | 8 cut(s) | 59, 86, 124, 876, 1063, 1430, 1995, 2460 |
| AclWI | GGATC | 7 cut(s) | 102, 173, 583, 1919, 2332, 2403, 3696 |
| AcoI | YGGCCR | 2 cut(s) | 100, 3447 |
| AcsI | RAATTY | 8 cut(s) | 600, 796, 1011, 1723, 2761, 2893, 3664, 3771 |
| AcuI | CTGAAG | 4 cut(s) | 554, 1155, 1256, 2309 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 349, 706, 1418, 3408, 3493 |
| AflII | CTTAAG | 1 cut(s) | 3395 |
| AflIII | ACRYGT | 2 cut(s) | 199, 1617 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2964 |
| AjiI | CACGTC | 2 cut(s) | 1618, 3087 |
| AjnI | CCWGG | 5 cut(s) | 878, 1267, 2901, 3096, 3699 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1668, 1700 |
| AleI | CACNNNNGTG | 1 cut(s) | 3849 |
| AloI | GAACNNNNNNTCC | 6 cut(s) | 234, 266, 651, 683, 2361, 2393 |
| Alw21I | GWGCWC | 2 cut(s) | 2863, 3163 |
| Alw26I | GTCTC | 9 cut(s) | 178, 208, 1144, 1418, 1456, 1493, 2442, 2772, 3737 |
| AlwI | GGATC | 7 cut(s) | 102, 173, 583, 1919, 2332, 2403, 3696 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1234 |
| Ama87I | CYCGRG | 2 cut(s) | 1949, 3735 |
| Aor13HI | TCCGGA | 1 cut(s) | 1360 |
| AoxI | GGCC | 6 cut(s) | 100, 774, 881, 1476, 3447, 3934 |
| ApeKI | GCWGC | 2 cut(s) | 819, 1997 |
| ApoI | RAATTY | 8 cut(s) | 600, 796, 1011, 1723, 2761, 2893, 3664, 3771 |
| AseI | ATTAAT | 1 cut(s) | 2268 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 567 |
| AspLEI | GCGC | 3 cut(s) | 95, 214, 3340 |
| AspS9I | GGNCC | 3 cut(s) | 775, 920, 2948 |
| AsuC2I | CCSGG | 1 cut(s) | 2353 |
| AsuHPI | GGTGA | 4 cut(s) | 209, 407, 608, 2827 |
| AvaI | CYCGRG | 2 cut(s) | 1949, 3735 |
| AvaII | GGWCC | 2 cut(s) | 920, 2948 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1049, 1082 |
| BalI | TGGCCA | 1 cut(s) | 3449 |
| BbsI | GAAGAC | 5 cut(s) | 463, 560, 1907, 2165, 3375 |
| Bbv12I | GWGCWC | 2 cut(s) | 2863, 3163 |
| BbvCI | CCTCAGC | 1 cut(s) | 906 |
| BbvI | GCAGC | 2 cut(s) | 831, 2009 |
| BceAI | ACGGC | 2 cut(s) | 115, 3921 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1124, 1158 |
| BciT130I | CCWGG | 5 cut(s) | 880, 1269, 2903, 3098, 3701 |
| BclI | TGATCA | 1 cut(s) | 3787 |
| BcnI | CCSGG | 1 cut(s) | 2353 |
| BcoDI | GTCTC | 9 cut(s) | 178, 208, 1144, 1418, 1456, 1493, 2442, 2772, 3737 |
| BfmI | CTRYAG | 4 cut(s) | 632, 1718, 2200, 3248 |
| BfrI | CTTAAG | 1 cut(s) | 3395 |
| BfuAI | ACCTGC | 1 cut(s) | 3132 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 3544 |
| BglII | AGATCT | 1 cut(s) | 2346 |
| BisI | GCNGC | 5 cut(s) | 86, 820, 876, 1998, 2460 |
| BlsI | GCNGC | 5 cut(s) | 87, 821, 877, 1999, 2461 |
| Bme1390I | CCNGG | 6 cut(s) | 880, 1269, 2353, 2903, 3098, 3701 |
| Bme18I | GGWCC | 2 cut(s) | 920, 2948 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2964 |
| BmeT110I | CYCGRG | 2 cut(s) | 1949, 3735 |
| BmgBI | CACGTC | 2 cut(s) | 1618, 3087 |
| BmgT120I | GGNCC | 3 cut(s) | 775, 920, 2948 |
| BmiI | GGNNCC | 3 cut(s) | 452, 2263, 2949 |
| BmrFI | CCNGG | 6 cut(s) | 880, 1269, 2353, 2903, 3098, 3701 |
| BpiI | GAAGAC | 5 cut(s) | 463, 560, 1907, 2165, 3375 |
| BpmI | CTGGAG | 2 cut(s) | 2112, 3075 |
| Bpu10I | CCTNAGC | 2 cut(s) | 687, 906 |
| BpuEI | CTTGAG | 4 cut(s) | 972, 1272, 1480, 3512 |
| BpuMI | CCSGG | 1 cut(s) | 2353 |
| Bsa29I | ATCGAT | 1 cut(s) | 2747 |
| BsaAI | YACGTR | 1 cut(s) | 3478 |
| BsaBI | GATNNNNATC | 1 cut(s) | 3608 |
| BsaJI | CCNNGG | 8 cut(s) | 133, 592, 1267, 1268, 1640, 1740, 2646, 3444 |
| BsaWI | WCCGGW | 1 cut(s) | 1360 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2850, 2880 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 349, 706, 1418, 3408, 3493 |
| Bse118I | RCCGGY | 2 cut(s) | 2707, 3493 |
| Bse1I | ACTGG | 3 cut(s) | 1990, 3214, 3539 |
| Bse3DI | GCAATG | 2 cut(s) | 1445, 3124 |
| Bse8I | GATNNNNATC | 1 cut(s) | 3608 |
| BseAI | TCCGGA | 1 cut(s) | 1360 |
| BseBI | CCWGG | 5 cut(s) | 880, 1269, 2903, 3098, 3701 |
| BseCI | ATCGAT | 1 cut(s) | 2747 |
| BseDI | CCNNGG | 8 cut(s) | 133, 592, 1267, 1268, 1640, 1740, 2646, 3444 |
| BseJI | GATNNNNATC | 1 cut(s) | 3608 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 349, 706, 1418, 3408, 3493 |
| BseMI | GCAATG | 2 cut(s) | 1445, 3124 |
| BseNI | ACTGG | 3 cut(s) | 1990, 3214, 3539 |
| BseRI | GAGGAG | 3 cut(s) | 32, 259, 599 |
| BseXI | GCAGC | 2 cut(s) | 831, 2009 |
| BseYI | CCCAGC | 2 cut(s) | 777, 3669 |
| BsgI | GTGCAG | 1 cut(s) | 3160 |
| Bsh1236I | CGCG | 2 cut(s) | 126, 212 |
| BshFI | GGCC | 6 cut(s) | 102, 776, 883, 1478, 3449, 3936 |
| BshVI | ATCGAT | 1 cut(s) | 2747 |
| BsiHKAI | GWGCWC | 2 cut(s) | 2863, 3163 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1949, 3735 |
| BsiSI | CCGG | 4 cut(s) | 1361, 2353, 2708, 3494 |
| BslFI | GGGAC | 1 cut(s) | 2267 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 349, 706, 1418, 3408, 3493 |
| BsmAI | GTCTC | 9 cut(s) | 178, 208, 1144, 1418, 1456, 1493, 2442, 2772, 3737 |
| BsmBI | CGTCTC | 1 cut(s) | 178 |
| BsmFI | GGGAC | 1 cut(s) | 2267 |
| BsmI | GAATGC | 5 cut(s) | 186, 1135, 2823, 2999, 3695 |
| BsnI | GGCC | 6 cut(s) | 102, 776, 883, 1478, 3449, 3936 |
| BsoBI | CYCGRG | 2 cut(s) | 1949, 3735 |
| Bsp1286I | GDGCHC | 2 cut(s) | 2863, 3163 |
| Bsp13I | TCCGGA | 1 cut(s) | 1360 |
| Bsp1407I | TGTACA | 4 cut(s) | 196, 615, 1622, 1811 |
| BspACI | CCGC | 8 cut(s) | 59, 86, 124, 876, 1063, 1430, 1995, 2460 |
| BspANI | GGCC | 6 cut(s) | 102, 776, 883, 1478, 3449, 3936 |
| BspDI | ATCGAT | 1 cut(s) | 2747 |
| BspEI | TCCGGA | 1 cut(s) | 1360 |
| BspFNI | CGCG | 2 cut(s) | 126, 212 |
| BspHI | TCATGA | 1 cut(s) | 2541 |
| BspLI | GGNNCC | 3 cut(s) | 452, 2263, 2949 |
| BspMI | ACCTGC | 1 cut(s) | 3132 |
| BspPI | GGATC | 7 cut(s) | 102, 173, 583, 1919, 2332, 2403, 3696 |
| BspQI | GCTCTTC | 2 cut(s) | 1911, 2499 |
| BspTI | CTTAAG | 1 cut(s) | 3395 |
| BsrDI | GCAATG | 2 cut(s) | 1445, 3124 |
| BsrFI | RCCGGY | 2 cut(s) | 2707, 3493 |
| BsrGI | TGTACA | 4 cut(s) | 196, 615, 1622, 1811 |
| BsrI | ACTGG | 3 cut(s) | 1990, 3214, 3539 |
| BssAI | RCCGGY | 2 cut(s) | 2707, 3493 |
| BssECI | CCNNGG | 8 cut(s) | 133, 592, 1267, 1268, 1640, 1740, 2646, 3444 |
| BssT1I | CCWWGG | 5 cut(s) | 133, 1640, 1740, 2646, 3444 |
| Bst2UI | CCWGG | 5 cut(s) | 880, 1269, 2903, 3098, 3701 |
| Bst6I | CTCTTC | 6 cut(s) | 319, 369, 1142, 1911, 2472, 2499 |
| BstAFI | CTTAAG | 1 cut(s) | 3395 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 3126 |
| BstAUI | TGTACA | 4 cut(s) | 196, 615, 1622, 1811 |
| BstBAI | YACGTR | 1 cut(s) | 3478 |
| BstC8I | GCNNGC | 9 cut(s) | 817, 1521, 1956, 2043, 2493, 2774, 2938, 3495, 3651 |
| BstDSI | CCRYGG | 1 cut(s) | 592 |
| BstFNI | CGCG | 2 cut(s) | 126, 212 |
| BstHHI | GCGC | 3 cut(s) | 95, 214, 3340 |
| BstMAI | GTCTC | 9 cut(s) | 178, 208, 1144, 1418, 1456, 1493, 2442, 2772, 3737 |
| BstNI | CCWGG | 5 cut(s) | 880, 1269, 2903, 3098, 3701 |
| BstNSI | RCATGY | 2 cut(s) | 203, 1523 |
| BstSCI | CCNGG | 6 cut(s) | 878, 1267, 2351, 2901, 3096, 3699 |
| BstSFI | CTRYAG | 4 cut(s) | 632, 1718, 2200, 3248 |
| BstUI | CGCG | 2 cut(s) | 126, 212 |
| BstV1I | GCAGC | 2 cut(s) | 831, 2009 |
| BstV2I | GAAGAC | 5 cut(s) | 463, 560, 1907, 2165, 3375 |
| BstX2I | RGATCY | 4 cut(s) | 588, 2337, 2346, 2408 |
| BstYI | RGATCY | 4 cut(s) | 588, 2337, 2346, 2408 |
| Bsu15I | ATCGAT | 1 cut(s) | 2747 |
| BsuRI | GGCC | 6 cut(s) | 102, 776, 883, 1478, 3449, 3936 |
| BsuTUI | ATCGAT | 1 cut(s) | 2747 |
| BtgI | CCRYGG | 1 cut(s) | 592 |
| BtrI | CACGTC | 2 cut(s) | 1618, 3087 |
| BtsI | GCAGTG | 3 cut(s) | 475, 2718, 2781 |
| BveI | ACCTGC | 1 cut(s) | 3132 |
| Cac8I | GCNNGC | 9 cut(s) | 817, 1521, 1956, 2043, 2493, 2774, 2938, 3495, 3651 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1234 |
| CciI | TCATGA | 1 cut(s) | 2541 |
| CfoI | GCGC | 3 cut(s) | 95, 214, 3340 |
| Cfr10I | RCCGGY | 2 cut(s) | 2707, 3493 |
| Cfr13I | GGNCC | 3 cut(s) | 775, 920, 2948 |
| ClaI | ATCGAT | 1 cut(s) | 2747 |
| CsiI | ACCWGGT | 1 cut(s) | 2901 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1917, 1952 |
| DraI | TTTAAA | 2 cut(s) | 891, 2535 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2964 |
| EaeI | YGGCCR | 2 cut(s) | 100, 3447 |
| Eam1104I | CTCTTC | 6 cut(s) | 319, 369, 1142, 1911, 2472, 2499 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2964 |
| EarI | CTCTTC | 6 cut(s) | 319, 369, 1142, 1911, 2472, 2499 |
| EciI | GGCGGA | 1 cut(s) | 74 |
| Eco130I | CCWWGG | 5 cut(s) | 133, 1640, 1740, 2646, 3444 |
| Eco147I | AGGCCT | 1 cut(s) | 883 |
| Eco32I | GATATC | 2 cut(s) | 2196, 2439 |
| Eco47I | GGWCC | 2 cut(s) | 920, 2948 |
| Eco57I | CTGAAG | 4 cut(s) | 554, 1155, 1256, 2309 |
| Eco88I | CYCGRG | 2 cut(s) | 1949, 3735 |
| EcoRI | GAATTC | 3 cut(s) | 1723, 2893, 3664 |
| EcoRII | CCWGG | 5 cut(s) | 878, 1267, 2901, 3096, 3699 |
| EcoRV | GATATC | 2 cut(s) | 2196, 2439 |
| EcoT14I | CCWWGG | 5 cut(s) | 133, 1640, 1740, 2646, 3444 |
| EcoT22I | ATGCAT | 2 cut(s) | 1369, 3153 |
| ErhI | CCWWGG | 5 cut(s) | 133, 1640, 1740, 2646, 3444 |
| Esp3I | CGTCTC | 1 cut(s) | 178 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 528, 560, 1668, 1700 |
| FaqI | GGGAC | 1 cut(s) | 2267 |
| FauNDI | CATATG | 1 cut(s) | 468 |
| FbaI | TGATCA | 1 cut(s) | 3787 |
| FblI | GTMKAC | 2 cut(s) | 1527, 3089 |
| Fnu4HI | GCNGC | 5 cut(s) | 86, 820, 876, 1998, 2460 |
| Fsp4HI | GCNGC | 5 cut(s) | 86, 820, 876, 1998, 2460 |
| GlaI | GCGC | 3 cut(s) | 94, 213, 3339 |
| GluI | GCNGC | 5 cut(s) | 86, 820, 876, 1998, 2460 |
| GsaI | CCCAGC | 2 cut(s) | 781, 3673 |
| GsuI | CTGGAG | 2 cut(s) | 2112, 3075 |
| HaeIII | GGCC | 6 cut(s) | 102, 776, 883, 1478, 3449, 3936 |
| HapII | CCGG | 4 cut(s) | 1361, 2353, 2708, 3494 |
| HhaI | GCGC | 3 cut(s) | 95, 214, 3340 |
| Hin6I | GCGC | 3 cut(s) | 93, 212, 3338 |
| HinP1I | GCGC | 3 cut(s) | 93, 212, 3338 |
| HincII | GTYRAC | 8 cut(s) | 765, 1093, 1440, 1660, 2476, 2484, 3090, 3229 |
| HindII | GTYRAC | 8 cut(s) | 765, 1093, 1440, 1660, 2476, 2484, 3090, 3229 |
| HindIII | AAGCTT | 4 cut(s) | 689, 1238, 2871, 3173 |
| HpaI | GTTAAC | 1 cut(s) | 1440 |
| HpaII | CCGG | 4 cut(s) | 1361, 2353, 2708, 3494 |
| HphI | GGTGA | 4 cut(s) | 209, 407, 608, 2827 |
| Hpy99I | CGWCG | 2 cut(s) | 131, 3091 |
| HpyAV | CCTTC | 9 cut(s) | 557, 1179, 1929, 2438, 2494, 2681, 3274, 3371, 3926 |
| HpyCH4IV | ACGT | 4 cut(s) | 1617, 3005, 3086, 3477 |
| HpySE526I | ACGT | 4 cut(s) | 1617, 3005, 3086, 3477 |
| HspAI | GCGC | 3 cut(s) | 93, 212, 3338 |
| Kpn2I | TCCGGA | 1 cut(s) | 1360 |
| KroI | GCCGGC | 1 cut(s) | 3493 |
| KroNI | GCCGGC | 1 cut(s) | 3495 |
| Ksp22I | TGATCA | 1 cut(s) | 3787 |
| KspAI | GTTAAC | 1 cut(s) | 1440 |
| LguI | GCTCTTC | 2 cut(s) | 1911, 2499 |
| LmnI | GCTCC | 7 cut(s) | 334, 450, 468, 2074, 2858, 3056, 3158 |
| Lsp1109I | GCAGC | 2 cut(s) | 831, 2009 |
| MabI | ACCWGGT | 1 cut(s) | 2901 |
| MaeII | ACGT | 4 cut(s) | 1617, 3005, 3086, 3477 |
| MaeIII | GTNAC | 6 cut(s) | 573, 1887, 2636, 3006, 3263, 3676 |
| MfeI | CAATTG | 1 cut(s) | 2550 |
| MflI | RGATCY | 4 cut(s) | 588, 2337, 2346, 2408 |
| MhlI | GDGCHC | 2 cut(s) | 2863, 3163 |
| MlsI | TGGCCA | 1 cut(s) | 3449 |
| MluNI | TGGCCA | 1 cut(s) | 3449 |
| MlyI | GAGTC | 5 cut(s) | 2179, 2613, 2953, 3519, 3575 |
| MmeI | TCCRAC | 4 cut(s) | 34, 428, 2601, 3666 |
| Mox20I | TGGCCA | 1 cut(s) | 3449 |
| Mph1103I | ATGCAT | 2 cut(s) | 1369, 3153 |
| MroI | TCCGGA | 1 cut(s) | 1360 |
| MroNI | GCCGGC | 1 cut(s) | 3493 |
| MroXI | GAANNNNTTC | 1 cut(s) | 567 |
| MscI | TGGCCA | 1 cut(s) | 3449 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1181, 3726, 3849 |
| Msp20I | TGGCCA | 1 cut(s) | 3449 |
| MspCI | CTTAAG | 1 cut(s) | 3395 |
| MspI | CCGG | 4 cut(s) | 1361, 2353, 2708, 3494 |
| MspR9I | CCNGG | 6 cut(s) | 880, 1269, 2353, 2903, 3098, 3701 |
| MunI | CAATTG | 1 cut(s) | 2550 |
| Mva1269I | GAATGC | 5 cut(s) | 186, 1135, 2823, 2999, 3695 |
| MvaI | CCWGG | 5 cut(s) | 880, 1269, 2903, 3098, 3701 |
| MvnI | CGCG | 2 cut(s) | 126, 212 |
| NaeI | GCCGGC | 1 cut(s) | 3495 |
| NciI | CCSGG | 1 cut(s) | 2353 |
| NdeI | CATATG | 1 cut(s) | 468 |
| NgoMIV | GCCGGC | 1 cut(s) | 3493 |
| NlaIV | GGNNCC | 3 cut(s) | 452, 2263, 2949 |
| NmeAIII | GCCGAG | 1 cut(s) | 1156 |
| NmuCI | GTSAC | 2 cut(s) | 1887, 3676 |
| NsiI | ATGCAT | 2 cut(s) | 1369, 3153 |
| NspI | RCATGY | 2 cut(s) | 203, 1523 |
| OliI | CACNNNNGTG | 1 cut(s) | 3849 |
| PaeI | GCATGC | 1 cut(s) | 1523 |
| PaeR7I | CTCGAG | 1 cut(s) | 3735 |
| PagI | TCATGA | 1 cut(s) | 2541 |
| PasI | CCCWGGG | 1 cut(s) | 1268 |
| PceI | AGGCCT | 1 cut(s) | 883 |
| PciI | ACATGT | 1 cut(s) | 199 |
| PciSI | GCTCTTC | 2 cut(s) | 1911, 2499 |
| PctI | GAATGC | 5 cut(s) | 186, 1135, 2823, 2999, 3695 |
| PdiI | GCCGGC | 1 cut(s) | 3495 |
| PdmI | GAANNNNTTC | 1 cut(s) | 567 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 349, 1418, 3408 |
| PfoI | TCCNGGA | 2 cut(s) | 2351, 3699 |
| PkrI | GCNGC | 5 cut(s) | 87, 821, 877, 1999, 2461 |
| PleI | GAGTC | 5 cut(s) | 2178, 2613, 2953, 3519, 3574 |
| PpsI | GAGTC | 5 cut(s) | 2178, 2613, 2953, 3519, 3574 |
| Ppu21I | YACGTR | 1 cut(s) | 3478 |
| PscI | ACATGT | 1 cut(s) | 199 |
| PshBI | ATTAAT | 1 cut(s) | 2268 |
| Psp6I | CCWGG | 5 cut(s) | 878, 1267, 2901, 3096, 3699 |
| PspFI | CCCAGC | 2 cut(s) | 777, 3669 |
| PspGI | CCWGG | 5 cut(s) | 878, 1267, 2901, 3096, 3699 |
| PspN4I | GGNNCC | 3 cut(s) | 452, 2263, 2949 |
| PspPI | GGNCC | 3 cut(s) | 775, 920, 2948 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1188, 1220 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1234 |
| PsuI | RGATCY | 4 cut(s) | 588, 2337, 2346, 2408 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1181, 3726, 3849 |
| SalI | GTCGAC | 1 cut(s) | 3088 |
| SapI | GCTCTTC | 2 cut(s) | 1911, 2499 |
| SatI | GCNGC | 5 cut(s) | 86, 820, 876, 1998, 2460 |
| Sau96I | GGNCC | 3 cut(s) | 775, 920, 2948 |
| SchI | GAGTC | 5 cut(s) | 2179, 2613, 2953, 3519, 3575 |
| ScrFI | CCNGG | 6 cut(s) | 880, 1269, 2353, 2903, 3098, 3701 |
| SduI | GDGCHC | 2 cut(s) | 2863, 3163 |
| SexAI | ACCWGGT | 1 cut(s) | 2901 |
| SfcI | CTRYAG | 4 cut(s) | 632, 1718, 2200, 3248 |
| Sfr274I | CTCGAG | 1 cut(s) | 3735 |
| SinI | GGWCC | 2 cut(s) | 920, 2948 |
| SlaI | CTCGAG | 1 cut(s) | 3735 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1181, 3726, 3849 |
| SmlI | CTYRAG | 6 cut(s) | 987, 1287, 1459, 3395, 3527, 3735 |
| SmoI | CTYRAG | 6 cut(s) | 987, 1287, 1459, 3395, 3527, 3735 |
| SphI | GCATGC | 1 cut(s) | 1523 |
| SseBI | AGGCCT | 1 cut(s) | 883 |
| SsiI | CCGC | 8 cut(s) | 59, 86, 124, 876, 1063, 1430, 1995, 2460 |
| SspI | AATATT | 3 cut(s) | 2272, 2884, 3630 |
| StuI | AGGCCT | 1 cut(s) | 883 |
| StyD4I | CCNGG | 6 cut(s) | 878, 1267, 2351, 2901, 3096, 3699 |
| StyI | CCWWGG | 5 cut(s) | 133, 1640, 1740, 2646, 3444 |
| TaiI | ACGT | 4 cut(s) | 1620, 3008, 3089, 3480 |
| TatI | WGTACW | 7 cut(s) | 196, 615, 995, 1556, 1622, 1811, 3470 |
| TauI | GCSGC | 3 cut(s) | 88, 878, 2462 |
| TseFI | GTSAC | 2 cut(s) | 1887, 3676 |
| TseI | GCWGC | 2 cut(s) | 819, 1997 |
| Tsp45I | GTSAC | 2 cut(s) | 1887, 3676 |
| TspGWI | ACGGA | 4 cut(s) | 364, 581, 912, 3781 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 349, 1418, 3408 |
| Vha464I | CTTAAG | 1 cut(s) | 3395 |
| VpaK11BI | GGWCC | 2 cut(s) | 920, 2948 |
| VspI | ATTAAT | 1 cut(s) | 2268 |
| XapI | RAATTY | 8 cut(s) | 600, 796, 1011, 1723, 2761, 2893, 3664, 3771 |
| XbaI | TCTAGA | 1 cut(s) | 2278 |
| XceI | RCATGY | 2 cut(s) | 203, 1523 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2852 |
| XhoI | CTCGAG | 1 cut(s) | 3735 |
| XmiI | GTMKAC | 2 cut(s) | 1527, 3089 |
| XmnI | GAANNNNTTC | 1 cut(s) | 567 |
| Zsp2I | ATGCAT | 2 cut(s) | 1369, 3153 |