Rw4G014550

AtPRD1,PRD1

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Reverse (-)
33682332 .. 33689102
6771 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G014550.1

Sequence Viewer

Length: 3915 bp
ATGTACTTCGACGATTCTCAGTCACACAACCTCCAACACTACTGCGTACCAGAACCAGAAGAAGATGAAGACTCCGGTGACAATTACGCTTCGCCGCCGCCGACTTGCTCCCAGGGCCACCGCTCCAGTCTCGTCCTCCAAACCAAGCAAGGCGGCTCCATCTGCCTCCTCTGCTTCTCCAATCTCATCTCAAACCCTCAATCTCCCACCGTCCACGTGTCCTACGCTCTCTCCCAGCTCTCCCAGGCCCTCTCCGACCCTCCCTTCCTCCGCTCCCTCCTCACCTTCCACTCTCACCTCCTCGTCTCCCCGCTCGTCCAAACCCTAGCCTCCTTCGACGACGACCCCATCGCACGACAAGTCGTGGATCTCGTCTCCGGTCTCTGCGATTCCGGCGATCCCTCACTGGCTGCTGAGTTCGTCGCTCGGCTTTCGGATCGCCTCTCTTCCGGCGCCTTGGCTTGGAGTCGCCGTCAGGTTTACACGCTTCACTGCTTAGGAGTTCTCTTAAACTGTCAGCAGAGTAATCCTTTTGCTCACATTAGAGACAAAAATGGCCTCATTACAAATCTTGTTTCAGGTCTTCAATTACCAAGTGAAGAGATTCGGGGAGAAATCCTGTTTGTTCTGTACAAAGTATCTGCTCTCCACTATGCATCAGAGGATGCTGATGGATCTGATCTTTTATTTTCCTTTTGCCCCAAGTTAGTGCGCCTGTCTCTGGAGGCCCTCATGAAGACCCAAAGTGATGACGTCCGCTTGAATTGTATAGCTCTTTTGACGGTCTTGGCTCGGAGAGGGCTTTTTGGGACTGCATATGCCCTTGATTTAAACAGCATGAGTTCATCTGAAGAAGATAGCTTTGTGCAAGCAACAGAAGATGGAAAAGATATGCATCCTCTGAACATATTATTTACTGAGGCCATCAAAGGCCCACTTCTTTCAACAGACAGCCAAGTCCAGATCAGCACACTAGATTTACTCTTTCACTATATGTCCTGTGAAGGCACTTCATCCAGAGAAATCCAAGTACTAGTTGAAGAAAGCATTGCAGATTATGTGTTTGAAATACTGAGATTGTCAGAATGCAAGGATCCGGCTGTCAAATCTTGCCTTCAGGTACTTGATATTTTATCAAAAGCTGAGCAAGCTTTCAAACAGAGGCTTGTTGTTGGGTTTGCAATTCTGGTTCCAGTACTACATTATGTAGCTGAAGTTCCTTTCCATCCGGTTCAAAATCAAACTCTGAAGCTTATTTTGAACTGCATTTCTGATTGTCCCGGAATGCTATCCTCCTCTCATATAGAGGAACTAGTTCCTGTTTTAACAAAGATGCTTAAACAACATACTGATGGGGATATGGGCATGCTTGAGGAGACATTTATAATGACCTGTTCAGTCCTTGTAGCTATCATAAGAACTCCATCTTTTCATGTGAGTTTGAATCTAGCACCATCAATTAAAGAAGCATTAGAATATGCTGTCTTAGCTTGTCTAAGTACATCCAACAAACATCCCGGTCAACTTCTGCATTCCTTGTACCTACTTAAAGAGGCATACATGTATAGTCGTGAAGAAAATTCTACTGACTCCTCTAAAATAGAACTACGAAATTTGATTTTGAGTTTGTGTACAAAACATTTGTTGCCTTGGCTGGTAACCACCTTAAGTGAAATGGAAGAGGAAACTATCCTTGGAGTACTGGAAACTTTTCATTCGATACTGCTTCAGGATTCTGATAACCAAGCCAGAGAATTTGCAATGACGCTACTTTCGAGCACTTGGTTCACGTTGTCATTTGGATGTCTAGGCTTATTCCCTGCTGAGAAAATGAAGTGGAGGGTGTATCTGATGCTCAGTTCACTGGTGGATGTGCTTTTGGGAACTGATACTGGGCAACCCATTAGGGATGCTACTACATATCTGCCATCTGATCCCATTGATTTGCTTTTTCTACTTGGTCAAAGGAACACCCATAATTTGGAATTATCTTCTTGTCAATCTGCCATTTTGCTGATCTTATACATCAGTTCTTTACATGATGAAAGACTTGCAGATGATAAGATGGTTTTAGCCTCTCTGGAGCAATATATTTTGGTCAACAGCAGTGATCTCCAAAGTGGAGCCACTGATTCGTTCACAGTGATGATGCTGTTGTTTCTTTACGGCCTTTATAGGGGTCTTGCCGAGGTTAGCTACCAAATCCCCTATAGTCCAGAAGCTGAAAGAATCCTGTTTCAGATAGTAACTGAAAATGAATGGGATTTGTCTTCTGCAAGAATTCATCCAATATCATTGAAATGGTTCTTTCAACAAGAGAAATTGAGAAACTCATTATCTTATCAGCTTCTGAAATTTTGCAGAAGGAATACATCAAATGTCTCTGAAAGCACTGCCCATGGAAAGAATAGTCATATATTAAATGTTAATGCAATTGCAGAGTTAATAGTAGAAGAACATAGTTATGGCGCCACAATTTTGGTGTGCTTATTGACAGAGCTTGTTCAAACAGAAGGTCAAGAGCAAGAGATAATTTCTGTAGTCAATCTCATGGCAACAATTTTCGACATATATCCAACCATTTCAGACCAGTTATGCTTTCTTGGTATTGGAAATGCAGCTCGTACTCTTTATTGTGAGTCCTCCTATACACAGTCCCCACAGATATCCGCAGTTGTGTTGGTTCTTATTTTTAAAATTCTATGCTCGGTGCAACATGATACTCTTTCTGATGATGAAAGTTGGCTTGCAGTGATTGTGAAGTTGATAAACAGTATCACCACAAAAGCTGCAGACATGTGGAATCATGAATGTCTCTTGGTGATTGGCATACTTTGCTTGATTTTGCACCATTCTGCTAATGCAGTGCTCACAGAAGCTTCAAAAACCATCATTTTCAGTAGTTCTCTAGTCTCTACAATCAACAGTGCAGTTCATGCAGCATGTCTTAAGGGGCCAGCATTGGTTGACCATGATGAAGGAACAAGCTCTGGAGAAATTTTGATATTTGTGCTTCTTCTAAATTACTTCACTTTAAGAAGTTTGCACATTGTTGTACCAGGGATTATGGACTGGAAAGTTTTCTTAGATCCCTCAGGTAGGATGCAGTCATTTTCCTTTATTGGCATCTACTGCCATGACCTGTGCAGGCTAATGCATTTTGGATCTCCTGTGGTCAAGCTTGCTGCTTCATACTGCCTGTTGGAGTTGTTCACCAGAATATCTGAGCAGAGGAATAGAACAGGGGAGGAGTTGCTATGTGCCACGAAAAGGCTTAGTTTTTACAGTGACCTCAGAGTGGCTATGAATTGTGGCCTGTGCCTGTCAATGATCATGGGGTGGGAATTGCCGGACATGCATGAGACAAGTGTGGATGCAAAGAATACTTGGAGTAGGATGGTTGTGGAAGAGCTCGCAATGTCTTTAGCTGTCCCGTGCCTGGCATCAAAATCTTTCATTAATCTTCACAAGCCTGCAATTCATGTTGCAGTTGCTCTGTTAAAACTGCAGAAGATTCCTAAGTGGATGAGATCCGTATTTGATGATACTTGCATATCTAGCATAATTCAAAACCTTGCGGCTAATAATTTGAGCACAGAAATTGTCCTATTATTTCGAGCTCTATTGAACTCAGAGTTCTTAAAGATGGAACAAATTGCTAGCTTAAATCAGTTGCTCCAGGTGTGCAGAAAACAAAAGTACACTGACAACACCAAGGATGATGGTGCGCAAGAGCATAGAGAGGTGATCAGCAACCTGGATGATTTGGGAGAAGTTTGTGAGTATCTCATTCGTTTGATGTCATCAGGGTCATCTTTAGATAAGGATTCTGGAGGATCACATCTTGGGGATAAGAGATTGTTAGAAGAAATAGAGCTTTTCTTTAGAACTTTAACGGTACAGGATGGAATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

1304

Amino Acids

145.24

Weight (kDa)

5.07

Isoelectric Point (pI)

54.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1385
AasI GACNNNNNNGTC 1 cut(s) 956
AatII GACGTC 1 cut(s) 756
Acc16I TGCGCA 1 cut(s) 3729
AccB1I GGYRCC 2 cut(s) 452, 2468
AccB7I CCANNNNNTGG 1 cut(s) 1981
AccBSI CCGCTC 3 cut(s) 123, 273, 313
AciI CCGC 9 cut(s) 95, 98, 121, 153, 271, 311, 757, 2670, 3578
AcsI RAATTY 7 cut(s) 1579, 1612, 1754, 2280, 2354, 2697, 2997
AcuI CTGAAG 5 cut(s) 870, 1100, 1233, 1268, 1712
AcvI CACGTG 1 cut(s) 217
AcyI GRCGYC 3 cut(s) 453, 753, 2469
AfiI CCNNNNNNNGG 8 cut(s) 462, 721, 1981, 2176, 3099, 3270, 3298, 3439
AflII CTTAAG 2 cut(s) 1666, 2948
AflIII ACRYGT 3 cut(s) 216, 1560, 2796
AhlI ACTAGT 2 cut(s) 1033, 1312
AjnI CCWGG 6 cut(s) 111, 243, 3058, 3438, 3678, 3756
AjuI GAANNNNNNNTTGG 2 cut(s) 1677, 1709
Alw21I GWGCWC 5 cut(s) 1781, 2871, 3414, 3596, 3622
AlwNI CAGNNNCTG 2 cut(s) 2222, 2350
AoxI GGCC 9 cut(s) 115, 246, 556, 726, 921, 931, 2167, 2954, 3313
ApeKI GCWGC 5 cut(s) 410, 2618, 2789, 2939, 3185
ApoI RAATTY 7 cut(s) 1579, 1612, 1754, 2280, 2354, 2697, 2997
ArsI GACNNNNNNTTYG 4 cut(s) 1756, 1788, 2500, 2532
AseI ATTAAT 1 cut(s) 3459
Asp700I GAANNNNTTC 5 cut(s) 603, 1314, 1710, 2303, 3080
AspLEI GCGC 4 cut(s) 455, 714, 2471, 3730
AspS9I GGNCC 5 cut(s) 115, 247, 727, 932, 2954
AsuC2I CCSGG 2 cut(s) 1281, 1518
AsuHPI GGTGA 7 cut(s) 89, 274, 287, 2770, 2833, 3205, 3757
AsuNHI GCTAGC 1 cut(s) 3659
AxyI CCTNAGG 1 cut(s) 3094
BamHI GGATCC 1 cut(s) 1093
BanI GGYRCC 2 cut(s) 452, 2468
BanII GRGCYC 2 cut(s) 3414, 3622
BbrPI CACGTG 1 cut(s) 217
BbsI GAAGAC 4 cut(s) 75, 575, 743, 2262
Bbv12I GWGCWC 5 cut(s) 1781, 2871, 3414, 3596, 3622
BbvI GCAGC 5 cut(s) 397, 2630, 2776, 2951, 3172
BceAI ACGGC 2 cut(s) 456, 2182
BciT130I CCWGG 6 cut(s) 113, 245, 3060, 3440, 3680, 3758
BclI TGATCA 2 cut(s) 3330, 3747
BcnI CCSGG 2 cut(s) 1281, 1518
BcuI ACTAGT 2 cut(s) 1033, 1312
BfaI CTAG 9 cut(s) 326, 974, 1034, 1313, 1448, 1808, 2909, 3558, 3660
BfmI CTRYAG 4 cut(s) 2209, 2538, 2790, 3506
BfoI RGCGCY 2 cut(s) 456, 2472
BfrI CTTAAG 2 cut(s) 1666, 2948
BisI GCNGC 9 cut(s) 95, 98, 154, 411, 2619, 2790, 2940, 3186, 3579
BlpI GCTNAGC 1 cut(s) 1143
BlsI GCNGC 9 cut(s) 96, 99, 155, 412, 2620, 2791, 2941, 3187, 3580
BmcAI AGTACT 3 cut(s) 1032, 1197, 1701
Bme1390I CCNGG 8 cut(s) 113, 245, 1281, 1518, 3060, 3440, 3680, 3758
BmgT120I GGNCC 5 cut(s) 115, 247, 727, 932, 2954
BmiI GGNNCC 7 cut(s) 157, 454, 1095, 1191, 2125, 2470, 2955
BmrFI CCNGG 8 cut(s) 113, 245, 1281, 1518, 3060, 3440, 3680, 3758
BmrI ACTGGG 1 cut(s) 1902
BmtI GCTAGC 1 cut(s) 3663
BmuI ACTGGG 1 cut(s) 1902
BpiI GAAGAC 4 cut(s) 75, 575, 743, 2262
BpmI CTGGAG 6 cut(s) 109, 743, 2102, 3012, 3662, 3852
Bpu10I CCTNAGC 1 cut(s) 496
Bpu1102I GCTNAGC 1 cut(s) 1143
BpuEI CTTGAG 1 cut(s) 1391
BpuMI CCSGG 2 cut(s) 1281, 1518
BsaAI YACGTR 1 cut(s) 217
BsaBI GATNNNNATC 1 cut(s) 894
BsaHI GRCGYC 3 cut(s) 453, 753, 2469
BsaI GGTCTC 1 cut(s) 386
BsaWI WCCGGW 3 cut(s) 74, 377, 1228
BsaXI ACNNNNNCTCC 6 cut(s) 15, 45, 215, 245, 457, 487
Bsc4I CCNNNNNNNGG 8 cut(s) 462, 721, 1981, 2176, 3099, 3270, 3298, 3439
Bse1I ACTGG 8 cut(s) 126, 411, 1193, 1707, 1869, 1897, 2590, 3077
Bse21I CCTNAGG 1 cut(s) 3094
Bse3DI GCAATG 3 cut(s) 1047, 1767, 3423
Bse8I GATNNNNATC 1 cut(s) 894
BseBI CCWGG 6 cut(s) 113, 245, 3060, 3440, 3680, 3758
BseJI GATNNNNATC 1 cut(s) 894
BseLI CCNNNNNNNGG 8 cut(s) 462, 721, 1981, 2176, 3099, 3270, 3298, 3439
BseMI GCAATG 3 cut(s) 1047, 1767, 3423
BseNI ACTGG 8 cut(s) 126, 411, 1193, 1707, 1869, 1897, 2590, 3077
BseRI GAGGAG 7 cut(s) 158, 269, 290, 1285, 1388, 1582, 3263
BseXI GCAGC 5 cut(s) 397, 2630, 2776, 2951, 3172
BseYI CCCAGC 1 cut(s) 234
BsgI GTGCAG 3 cut(s) 2949, 3166, 3706
BshFI GGCC 9 cut(s) 117, 248, 558, 728, 923, 933, 2169, 2956, 3315
BshNI GGYRCC 2 cut(s) 452, 2468
BsiHKAI GWGCWC 5 cut(s) 1781, 2871, 3414, 3596, 3622
BsiSI CCGG 9 cut(s) 75, 378, 393, 450, 1097, 1229, 1281, 1518, 3350
BslFI GGGAC 4 cut(s) 823, 1263, 2641, 3416
BslI CCNNNNNNNGG 8 cut(s) 462, 721, 1981, 2176, 3099, 3270, 3298, 3439
BsmBI CGTCTC 2 cut(s) 310, 379
BsmFI GGGAC 4 cut(s) 823, 1263, 2641, 3416
BsmI GAATGC 3 cut(s) 1091, 1290, 1531
BsnI GGCC 9 cut(s) 117, 248, 558, 728, 923, 933, 2169, 2956, 3315
Bso31I GGTCTC 1 cut(s) 386
Bsp1286I GDGCHC 5 cut(s) 1781, 2871, 3414, 3596, 3622
Bsp1407I TGTACA 2 cut(s) 630, 1631
Bsp1720I GCTNAGC 1 cut(s) 1143
Bsp19I CCATGG 1 cut(s) 2398
BspACI CCGC 9 cut(s) 95, 98, 121, 153, 271, 311, 757, 2670, 3578
BspANI GGCC 9 cut(s) 117, 248, 558, 728, 923, 933, 2169, 2956, 3315
BspHI TCATGA 2 cut(s) 732, 2806
BspLI GGNNCC 7 cut(s) 157, 454, 1095, 1191, 2125, 2470, 2955
BspMAI CTGCAG 2 cut(s) 2794, 3510
BspOI GCTAGC 1 cut(s) 3663
BspQI GCTCTTC 1 cut(s) 3402
BspT107I GGYRCC 2 cut(s) 452, 2468
BspTI CTTAAG 2 cut(s) 1666, 2948
BspTNI GGTCTC 1 cut(s) 386
BsrBI CCGCTC 3 cut(s) 123, 273, 313
BsrDI GCAATG 3 cut(s) 1047, 1767, 3423
BsrGI TGTACA 2 cut(s) 630, 1631
BsrI ACTGG 8 cut(s) 126, 411, 1193, 1707, 1869, 1897, 2590, 3077
BssNI GRCGYC 3 cut(s) 453, 753, 2469
BssT1I CCWWGG 5 cut(s) 456, 1649, 1693, 2398, 3714
Bst2UI CCWGG 6 cut(s) 113, 245, 3060, 3440, 3680, 3758
Bst4CI ACNGT 9 cut(s) 211, 515, 784, 2143, 2655, 2774, 2927, 3287, 3898
Bst6I CTCTTC 4 cut(s) 451, 594, 1674, 3402
BstACI GRCGYC 3 cut(s) 453, 753, 2469
BstAFI CTTAAG 2 cut(s) 1666, 2948
BstAPI GCANNNNNTGC 3 cut(s) 2835, 2936, 3132
BstAUI TGTACA 2 cut(s) 630, 1631
BstBAI YACGTR 1 cut(s) 217
BstDSI CCRYGG 1 cut(s) 2398
BstEII GGTNACC 1 cut(s) 1657
BstENI CCTNNNNNAGG 1 cut(s) 3097
BstH2I RGCGCY 2 cut(s) 456, 2472
BstHHI GCGC 4 cut(s) 455, 714, 2471, 3730
BstNI CCWGG 6 cut(s) 113, 245, 3060, 3440, 3680, 3758
BstNSI RCATGY 5 cut(s) 1369, 1564, 2800, 2946, 3358
BstPI GGTNACC 1 cut(s) 1657
BstSCI CCNGG 8 cut(s) 111, 243, 1279, 1516, 3058, 3438, 3678, 3756
BstSFI CTRYAG 4 cut(s) 2209, 2538, 2790, 3506
BstV1I GCAGC 5 cut(s) 397, 2630, 2776, 2951, 3172
BstV2I GAAGAC 4 cut(s) 75, 575, 743, 2262
BstX2I RGATCY 6 cut(s) 367, 674, 1093, 3088, 3164, 3530
BstXI CCANNNNNNTGG 1 cut(s) 2479
BstYI RGATCY 6 cut(s) 367, 674, 1093, 3088, 3164, 3530
Bsu36I CCTNAGG 1 cut(s) 3094
BsuRI GGCC 9 cut(s) 117, 248, 558, 728, 923, 933, 2169, 2956, 3315
BtgI CCRYGG 1 cut(s) 2398
BtgZI GCGATG 1 cut(s) 334
BtsI GCAGTG 5 cut(s) 490, 2113, 2391, 2757, 2871
CaiI CAGNNNCTG 2 cut(s) 2222, 2350
CciI TCATGA 2 cut(s) 732, 2806
CfoI GCGC 4 cut(s) 455, 714, 2471, 3730
Cfr13I GGNCC 5 cut(s) 115, 247, 727, 932, 2954
CseI GACGC 1 cut(s) 1774
DinI GGCGCC 2 cut(s) 454, 2470
DraI TTTAAA 2 cut(s) 831, 2695
DrdI GACNNNNNNGTC 1 cut(s) 956
DseDI GACNNNNNNGTC 1 cut(s) 956
Eam1104I CTCTTC 4 cut(s) 451, 594, 1674, 3402
EarI CTCTTC 4 cut(s) 451, 594, 1674, 3402
Ecl136II GAGCTC 2 cut(s) 3412, 3620
Eco130I CCWWGG 5 cut(s) 456, 1649, 1693, 2398, 3714
Eco24I GRGCYC 2 cut(s) 3414, 3622
Eco31I GGTCTC 1 cut(s) 386
Eco32I GATATC 1 cut(s) 2667
Eco53kI GAGCTC 2 cut(s) 3412, 3620
Eco57I CTGAAG 5 cut(s) 870, 1100, 1233, 1268, 1712
Eco72I CACGTG 1 cut(s) 217
Eco81I CCTNAGG 1 cut(s) 3094
Eco91I GGTNACC 1 cut(s) 1657
EcoICRI GAGCTC 2 cut(s) 3412, 3620
EcoNI CCTNNNNNAGG 1 cut(s) 3097
EcoO109I RGGNCCY 2 cut(s) 247, 727
EcoO65I GGTNACC 1 cut(s) 1657
EcoRI GAATTC 1 cut(s) 2280
EcoRII CCWGG 6 cut(s) 111, 243, 3058, 3438, 3678, 3756
EcoRV GATATC 1 cut(s) 2667
EcoT14I CCWWGG 5 cut(s) 456, 1649, 1693, 2398, 3714
EcoT22I ATGCAT 4 cut(s) 658, 897, 3159, 3360
EcoT38I GRGCYC 2 cut(s) 3414, 3622
EgeI GGCGCC 2 cut(s) 454, 2470
EheI GGCGCC 2 cut(s) 454, 2470
ErhI CCWWGG 5 cut(s) 456, 1649, 1693, 2398, 3714
Esp3I CGTCTC 2 cut(s) 310, 379
FalI AAGNNNNNCTT 2 cut(s) 921, 953
FaqI GGGAC 4 cut(s) 823, 1263, 2641, 3416
FauI CCCGC 1 cut(s) 318
FauNDI CATATG 1 cut(s) 817
FbaI TGATCA 2 cut(s) 3330, 3747
Fnu4HI GCNGC 9 cut(s) 95, 98, 154, 411, 2619, 2790, 2940, 3186, 3579
FriOI GRGCYC 2 cut(s) 3414, 3622
Fsp4HI GCNGC 9 cut(s) 95, 98, 154, 411, 2619, 2790, 2940, 3186, 3579
FspBI CTAG 9 cut(s) 326, 974, 1034, 1313, 1448, 1808, 2909, 3558, 3660
FspI TGCGCA 1 cut(s) 3729
GlaI GCGC 4 cut(s) 454, 713, 2470, 3729
GluI GCNGC 9 cut(s) 95, 98, 154, 411, 2619, 2790, 2940, 3186, 3579
GsaI CCCAGC 1 cut(s) 238
GsuI CTGGAG 6 cut(s) 109, 743, 2102, 3012, 3662, 3852
HaeII RGCGCY 2 cut(s) 456, 2472
HaeIII GGCC 9 cut(s) 117, 248, 558, 728, 923, 933, 2169, 2956, 3315
HapII CCGG 9 cut(s) 75, 378, 393, 450, 1097, 1229, 1281, 1518, 3350
HgaI GACGC 1 cut(s) 1774
HhaI GCGC 4 cut(s) 455, 714, 2471, 3730
Hin1I GRCGYC 3 cut(s) 453, 753, 2469
Hin6I GCGC 4 cut(s) 453, 712, 2469, 3728
HinP1I GCGC 4 cut(s) 453, 712, 2469, 3728
HincII GTYRAC 3 cut(s) 1523, 2101, 2968
HindII GTYRAC 3 cut(s) 1523, 2101, 2968
HindIII AAGCTT 4 cut(s) 1149, 1250, 2877, 3179
HpaII CCGG 9 cut(s) 75, 378, 393, 450, 1097, 1229, 1281, 1518, 3350
HphI GGTGA 7 cut(s) 89, 274, 287, 2770, 2833, 3205, 3757
Hpy99I CGWCG 4 cut(s) 14, 341, 344, 425
HpyAV CCTTC 8 cut(s) 274, 295, 343, 998, 1124, 2358, 2507, 2972
HpyCH4III ACNGT 9 cut(s) 211, 515, 784, 2143, 2655, 2774, 2927, 3287, 3898
HpyCH4IV ACGT 3 cut(s) 216, 753, 1790
HpySE526I ACGT 3 cut(s) 216, 753, 1790
Hsp92I GRCGYC 3 cut(s) 453, 753, 2469
HspAI GCGC 4 cut(s) 453, 712, 2469, 3728
KasI GGCGCC 2 cut(s) 452, 2468
Ksp22I TGATCA 2 cut(s) 3330, 3747
LguI GCTCTTC 1 cut(s) 3402
LmnI GCTCC 7 cut(s) 113, 128, 161, 278, 2083, 2123, 3681
Lsp1109I GCAGC 5 cut(s) 397, 2630, 2776, 2951, 3172
MaeI CTAG 9 cut(s) 326, 974, 1034, 1313, 1448, 1808, 2909, 3558, 3660
MaeII ACGT 3 cut(s) 216, 753, 1790
MaeIII GTNAC 5 cut(s) 21, 77, 1657, 2245, 3287
MbiI CCGCTC 3 cut(s) 123, 273, 313
MfeI CAATTG 1 cut(s) 2433
MflI RGATCY 6 cut(s) 367, 674, 1093, 3088, 3164, 3530
MhlI GDGCHC 5 cut(s) 1781, 2871, 3414, 3596, 3622
Mly113I GGCGCC 2 cut(s) 453, 2469
MlyI GAGTC 4 cut(s) 65, 475, 1583, 2648
MmeI TCCRAC 5 cut(s) 58, 279, 1530, 2600, 3183
Mph1103I ATGCAT 4 cut(s) 658, 897, 3159, 3360
MroXI GAANNNNTTC 5 cut(s) 603, 1314, 1710, 2303, 3080
MslI CAYNNNNRTG 5 cut(s) 1350, 1801, 2144, 2299, 2463
MspCI CTTAAG 2 cut(s) 1666, 2948
MspI CCGG 9 cut(s) 75, 378, 393, 450, 1097, 1229, 1281, 1518, 3350
MspR9I CCNGG 8 cut(s) 113, 245, 1281, 1518, 3060, 3440, 3680, 3758
MunI CAATTG 1 cut(s) 2433
Mva1269I GAATGC 3 cut(s) 1091, 1290, 1531
MvaI CCWGG 6 cut(s) 113, 245, 3060, 3440, 3680, 3758
NarI GGCGCC 2 cut(s) 453, 2469
NciI CCSGG 2 cut(s) 1281, 1518
NcoI CCATGG 1 cut(s) 2398
NdeI CATATG 1 cut(s) 817
NheI GCTAGC 1 cut(s) 3659
NlaIV GGNNCC 7 cut(s) 157, 454, 1095, 1191, 2125, 2470, 2955
NmeAIII GCCGAG 2 cut(s) 406, 2212
NmuCI GTSAC 3 cut(s) 21, 77, 3287
NsbI TGCGCA 1 cut(s) 3729
NsiI ATGCAT 4 cut(s) 658, 897, 3159, 3360
NspI RCATGY 5 cut(s) 1369, 1564, 2800, 2946, 3358
PaeI GCATGC 1 cut(s) 1369
PagI TCATGA 2 cut(s) 732, 2806
PasI CCCWGGG 1 cut(s) 112
PciI ACATGT 2 cut(s) 1560, 2796
PciSI GCTCTTC 1 cut(s) 3402
PcsI WCGNNNNNNNCGW 3 cut(s) 98, 369, 1772
PctI GAATGC 3 cut(s) 1091, 1290, 1531
PdmI GAANNNNTTC 5 cut(s) 603, 1314, 1710, 2303, 3080
PflMI CCANNNNNTGG 1 cut(s) 1981
PfoI TCCNGGA 1 cut(s) 1279
PkrI GCNGC 9 cut(s) 96, 99, 155, 412, 2620, 2791, 2941, 3187, 3580
PleI GAGTC 4 cut(s) 65, 474, 1583, 2647
PluTI GGCGCC 2 cut(s) 456, 2472
PmaCI CACGTG 1 cut(s) 217
PmlI CACGTG 1 cut(s) 217
PpsI GAGTC 4 cut(s) 65, 474, 1583, 2647
Ppu21I YACGTR 1 cut(s) 217
PscI ACATGT 2 cut(s) 1560, 2796
PshBI ATTAAT 1 cut(s) 3459
PsiI TTATAA 1 cut(s) 1385
Psp124BI GAGCTC 2 cut(s) 3414, 3622
Psp6I CCWGG 6 cut(s) 111, 243, 3058, 3438, 3678, 3756
PspCI CACGTG 1 cut(s) 217
PspEI GGTNACC 1 cut(s) 1657
PspFI CCCAGC 1 cut(s) 234
PspGI CCWGG 6 cut(s) 111, 243, 3058, 3438, 3678, 3756
PspN4I GGNNCC 7 cut(s) 157, 454, 1095, 1191, 2125, 2470, 2955
PspPI GGNCC 5 cut(s) 115, 247, 727, 932, 2954
PsrI GAACNNNNNNTAC 2 cut(s) 1200, 1232
PstI CTGCAG 2 cut(s) 2794, 3510
PstNI CAGNNNCTG 2 cut(s) 2222, 2350
PsuI RGATCY 6 cut(s) 367, 674, 1093, 3088, 3164, 3530
RseI CAYNNNNRTG 5 cut(s) 1350, 1801, 2144, 2299, 2463
SacI GAGCTC 2 cut(s) 3414, 3622
SapI GCTCTTC 1 cut(s) 3402
SatI GCNGC 9 cut(s) 95, 98, 154, 411, 2619, 2790, 2940, 3186, 3579
Sau96I GGNCC 5 cut(s) 115, 247, 727, 932, 2954
ScaI AGTACT 3 cut(s) 1032, 1197, 1701
SchI GAGTC 4 cut(s) 65, 475, 1583, 2648
ScrFI CCNGG 8 cut(s) 113, 245, 1281, 1518, 3060, 3440, 3680, 3758
SduI GDGCHC 5 cut(s) 1781, 2871, 3414, 3596, 3622
SfcI CTRYAG 4 cut(s) 2209, 2538, 2790, 3506
SfoI GGCGCC 2 cut(s) 454, 2470
SmiMI CAYNNNNRTG 5 cut(s) 1350, 1801, 2144, 2299, 2463
SmlI CTYRAG 3 cut(s) 1370, 1666, 2948
SmoI CTYRAG 3 cut(s) 1370, 1666, 2948
SpeI ACTAGT 2 cut(s) 1033, 1312
SphI GCATGC 1 cut(s) 1369
SsiI CCGC 9 cut(s) 95, 98, 121, 153, 271, 311, 757, 2670, 3578
SspDI GGCGCC 2 cut(s) 452, 2468
SspMI CTAG 9 cut(s) 326, 974, 1034, 1313, 1448, 1808, 2909, 3558, 3660
SstI GAGCTC 2 cut(s) 3414, 3622
StyD4I CCNGG 8 cut(s) 111, 243, 1279, 1516, 3058, 3438, 3678, 3756
StyI CCWWGG 5 cut(s) 456, 1649, 1693, 2398, 3714
TaaI ACNGT 9 cut(s) 211, 515, 784, 2143, 2655, 2774, 2927, 3287, 3898
TaiI ACGT 3 cut(s) 219, 756, 1793
TaqI TCGA 6 cut(s) 9, 336, 1718, 1775, 2565, 3616
TatI WGTACW 8 cut(s) 3, 630, 1030, 1195, 1499, 1631, 1699, 3699
TauI GCSGC 4 cut(s) 97, 100, 156, 3581
TseFI GTSAC 3 cut(s) 21, 77, 3287
TseI GCWGC 5 cut(s) 410, 2618, 2789, 2939, 3185
Tsp45I GTSAC 3 cut(s) 21, 77, 3287
TspGWI ACGGA 1 cut(s) 3523
Van91I CCANNNNNTGG 1 cut(s) 1981
Vha464I CTTAAG 2 cut(s) 1666, 2948
VspI ATTAAT 1 cut(s) 3459
XagI CCTNNNNNAGG 1 cut(s) 3097
XapI RAATTY 7 cut(s) 1579, 1612, 1754, 2280, 2354, 2697, 2997
XceI RCATGY 5 cut(s) 1369, 1564, 2800, 2946, 3358
XmnI GAANNNNTTC 5 cut(s) 603, 1314, 1710, 2303, 3080
XspI CTAG 9 cut(s) 326, 974, 1034, 1313, 1448, 1808, 2909, 3558, 3660
ZraI GACGTC 1 cut(s) 754
ZrmI AGTACT 3 cut(s) 1032, 1197, 1701
Zsp2I ATGCAT 4 cut(s) 658, 897, 3159, 3360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.