Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0002682

Physical Location & Seq

Genomic Coordinates Forward (+)

40832958 .. 40840159

Gene Structure 7202 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00197050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGACGGACGGTGCGCCGACGCCCTCCGCCAGCCGCCGTTCGGCCCGGCCTTCGCCGATCTGTCCGTCGGGCCCGCGAGTTATTTCGGAGGCATCGAAGTCGTCTCCCTCCTAGCAGAAGCTAAGGGAGAAGGTGGAGGGCCTTCGAAAGGAGTTGGAGGAGACATCCAAAACTCGCGGACACCAAGCGCCAACCGTCCAAGCAGCACCCTCCCCCGAACCGGAAAACCCACGAATTTTCTCCAAAGGATTTCTTCCTCCTCAGGCCATCTTTTGAAGCAAAACCAAGCCCAGACCAGCTCGCCTCCTCCCCACGAGCGGCCTGTTGGCCTCCTCTCCTCCCCTCATGGTGGCTACGCGGCGGTAGAGCTTGTTTCCGATTTAATCCCAATTTTGAGTCAACGCCAATATCTCGAGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

140

Amino Acids

14.61

Weight (kDa)

7.93

Isoelectric Point (pI)

52.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002682)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14180 AT4G14180
fragaria_vesca	FvH4_4g12860
malus_domestica	MD04G1022200.v1.1
prunus_persica	Prupe.1G172400_v2.0.a1 Prupe.1G176200_v2.0.a1
pyrus_communis	pycom04g01870
rosa_chinensis	RchiOBHm_Chr4g0412451 RchiOBHm_Chr4g0412511
rosa_laevigata	RLG00000008284 RLG00000008287 RLG00000008289 RLG00000008295 RLG00000008298
rosa_multiflora	Rmu_sc0002604.1_g000020 Rmu_sc0003914.1_g000006 Rmu_sc0005615.1_g000012
rosa_roxburghii	Rroxscaffold_161G00448090 Rroxscaffold_2G00117420 Rroxscaffold_4G00325160 Rroxscaffold_5G00356600 Rroxscaffold_5G00356610 Rroxscaffold_5G00356660 Rroxscaffold_5G00356680 Rroxscaffold_5G00356720 Rroxscaffold_7G00197050
rosa_rugosa	Rorug04G0103300 Rorug04G0103400 Rorug04G0103700.1
rosa_samantha	Rh4AG173200 Rh4AG173600 Rh4BG173100 Rh4CG184000 Rh4CG184500 Rh4DG167600 Rh4DG168300 Rh4DG168400 Rh4DG168900
rosa_wichuraiana	Rw4G014490 Rw4G014550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	319
AccII	CGCG	3 cut(s)	77, 178, 359
AciI	CCGC	7 cut(s)	28, 35, 75, 178, 319, 359, 362
AcsI	RAATTY	1 cut(s)	235
AcyI	GRCGYC	1 cut(s)	21
AfiI	CCNNNNNNNGG	5 cut(s)	41, 149, 221, 318, 350
AgsI	TTSAA	1 cut(s)	277
AluBI	AGCT	3 cut(s)	122, 300, 370
AluI	AGCT	3 cut(s)	122, 300, 370
Alw26I	GTCTC	2 cut(s)	109, 156
Ama87I	CYCGRG	1 cut(s)	413
AoxI	GGCC	7 cut(s)	43, 48, 71, 140, 265, 320, 328
ApaI	GGGCCC	1 cut(s)	75
ApeKI	GCWGC	1 cut(s)	204
ApoI	RAATTY	1 cut(s)	235
AspLEI	GCGC	2 cut(s)	17, 191
AspS9I	GGNCC	4 cut(s)	44, 71, 72, 140
AsuC2I	CCSGG	1 cut(s)	47
AsuII	TTCGAA	1 cut(s)	146
AvaI	CYCGRG	1 cut(s)	413
AxyI	CCTNAGG	1 cut(s)	262
BaeGI	GKGCMC	1 cut(s)	75
BanII	GRGCYC	1 cut(s)	75
BauI	CACGAG	1 cut(s)	314
BbvI	GCAGC	1 cut(s)	216
BccI	CCATC	1 cut(s)	276
BceAI	ACGGC	1 cut(s)	22
BcgI	CGANNNNNNTGC	2 cut(s)	82, 116
BcnI	CCSGG	1 cut(s)	47
BcoDI	GTCTC	2 cut(s)	109, 156
BfaI	CTAG	1 cut(s)	113
BfoI	RGCGCY	1 cut(s)	192
BisI	GCNGC	4 cut(s)	35, 205, 320, 360
BlsI	GCNGC	4 cut(s)	36, 206, 321, 361
Bme1390I	CCNGG	1 cut(s)	47
BmeT110I	CYCGRG	1 cut(s)	413
BmgT120I	GGNCC	4 cut(s)	44, 71, 72, 140
BmiI	GGNNCC	1 cut(s)	73
BmrFI	CCNGG	1 cut(s)	47
BmsI	GCATC	1 cut(s)	102
Bpu10I	CCTNAGC	1 cut(s)	123
Bpu14I	TTCGAA	1 cut(s)	146
BpuMI	CCSGG	1 cut(s)	47
BsaHI	GRCGYC	1 cut(s)	21
BsaWI	WCCGGW	1 cut(s)	221
Bsc4I	CCNNNNNNNGG	5 cut(s)	41, 149, 221, 318, 350
Bse21I	CCTNAGG	1 cut(s)	262
BseGI	GGATG	1 cut(s)	165
BseLI	CCNNNNNNNGG	5 cut(s)	41, 149, 221, 318, 350
BseMII	CTCAG	1 cut(s)	276
BseRI	GAGGAG	5 cut(s)	174, 250, 297, 323, 328
BseSI	GKGCMC	1 cut(s)	75
BseXI	GCAGC	1 cut(s)	216
Bsh1236I	CGCG	3 cut(s)	77, 178, 359
BshFI	GGCC	7 cut(s)	45, 50, 73, 142, 267, 322, 330
BsiHKCI	CYCGRG	1 cut(s)	413
BsiSI	CCGG	2 cut(s)	47, 222
BslI	CCNNNNNNNGG	5 cut(s)	41, 149, 221, 318, 350
BsmAI	GTCTC	2 cut(s)	109, 156
BsmBI	CGTCTC	1 cut(s)	109
BsnI	GGCC	7 cut(s)	45, 50, 73, 142, 267, 322, 330
BsoBI	CYCGRG	1 cut(s)	413
Bsp119I	TTCGAA	1 cut(s)	146
Bsp120I	GGGCCC	1 cut(s)	71
Bsp1286I	GDGCHC	1 cut(s)	75
Bsp143I	GATC	1 cut(s)	58
BspACI	CCGC	7 cut(s)	28, 35, 75, 178, 319, 359, 362
BspANI	GGCC	7 cut(s)	45, 50, 73, 142, 267, 322, 330
BspCNI	CTCAG	1 cut(s)	275
BspFNI	CGCG	3 cut(s)	77, 178, 359
BspLI	GGNNCC	1 cut(s)	73
BspT104I	TTCGAA	1 cut(s)	146
BsrBI	CCGCTC	1 cut(s)	319
BssMI	GATC	1 cut(s)	58
BssNI	GRCGYC	1 cut(s)	21
BssSI	CACGAG	1 cut(s)	314
Bst2BI	CACGAG	1 cut(s)	314
Bst4CI	ACNGT	2 cut(s)	12, 197
BstACI	GRCGYC	1 cut(s)	21
BstBI	TTCGAA	1 cut(s)	146
BstC8I	GCNNGC	3 cut(s)	32, 75, 302
BstDEI	CTNAG	2 cut(s)	123, 262
BstENI	CCTNNNNNAGG	1 cut(s)	147
BstF5I	GGATG	1 cut(s)	165
BstFNI	CGCG	3 cut(s)	77, 178, 359
BstH2I	RGCGCY	1 cut(s)	192
BstHHI	GCGC	2 cut(s)	17, 191
BstKTI	GATC	1 cut(s)	61
BstMAI	GTCTC	2 cut(s)	109, 156
BstMBI	GATC	1 cut(s)	58
BstSCI	CCNGG	1 cut(s)	45
BstSLI	GKGCMC	1 cut(s)	75
BstUI	CGCG	3 cut(s)	77, 178, 359
BstV1I	GCAGC	1 cut(s)	216
Bsu36I	CCTNAGG	1 cut(s)	262
BsuRI	GGCC	7 cut(s)	45, 50, 73, 142, 267, 322, 330
BtsCI	GGATG	1 cut(s)	165
Cac8I	GCNNGC	3 cut(s)	32, 75, 302
CfoI	GCGC	2 cut(s)	17, 191
Cfr13I	GGNCC	4 cut(s)	44, 71, 72, 140
CseI	GACGC	1 cut(s)	29
CviAII	CATG	1 cut(s)	347
DdeI	CTNAG	2 cut(s)	123, 262
DpnI	GATC	1 cut(s)	60
DpnII	GATC	1 cut(s)	58
EciI	GGCGGA	1 cut(s)	17
Eco24I	GRGCYC	1 cut(s)	75
Eco81I	CCTNAGG	1 cut(s)	262
Eco88I	CYCGRG	1 cut(s)	413
EcoNI	CCTNNNNNAGG	1 cut(s)	147
EcoO109I	RGGNCCY	1 cut(s)	140
EcoT38I	GRGCYC	1 cut(s)	75
Esp3I	CGTCTC	1 cut(s)	109
FaeI	CATG	1 cut(s)	350
FaiI	YATR	1 cut(s)	348
FalI	AAGNNNNNCTT	2 cut(s)	238, 270
FatI	CATG	1 cut(s)	346
FauI	CCCGC	1 cut(s)	82
Fnu4HI	GCNGC	4 cut(s)	35, 205, 320, 360
FokI	GGATG	1 cut(s)	152
FriOI	GRGCYC	1 cut(s)	75
Fsp4HI	GCNGC	4 cut(s)	35, 205, 320, 360
FspBI	CTAG	1 cut(s)	113
GlaI	GCGC	2 cut(s)	16, 190
GluI	GCNGC	4 cut(s)	35, 205, 320, 360
HaeII	RGCGCY	1 cut(s)	192
HaeIII	GGCC	7 cut(s)	45, 50, 73, 142, 267, 322, 330
HapII	CCGG	2 cut(s)	47, 222
HgaI	GACGC	1 cut(s)	29
HhaI	GCGC	2 cut(s)	17, 191
Hin1I	GRCGYC	1 cut(s)	21
Hin1II	CATG	1 cut(s)	350
Hin6I	GCGC	2 cut(s)	15, 189
HinP1I	GCGC	2 cut(s)	15, 189
HincII	GTYRAC	1 cut(s)	401
HindII	GTYRAC	1 cut(s)	401
HinfI	GANTC	1 cut(s)	397
HpaII	CCGG	2 cut(s)	47, 222
Hpy166II	GTNNAC	1 cut(s)	401
Hpy188I	TCNGA	2 cut(s)	89, 379
Hpy188III	TCNNGA	1 cut(s)	413
Hpy8I	GTNNAC	1 cut(s)	401
Hpy99I	CGWCG	2 cut(s)	23, 71
HpyAV	CCTTC	3 cut(s)	61, 125, 153
HpyCH4III	ACNGT	2 cut(s)	12, 197
HpyF3I	CTNAG	2 cut(s)	123, 262
Hsp92I	GRCGYC	1 cut(s)	21
Hsp92II	CATG	1 cut(s)	350
HspAI	GCGC	2 cut(s)	15, 189
Kzo9I	GATC	1 cut(s)	58
LpnPI	CCDG	7 cut(s)	44, 60, 235, 249, 305, 310, 336
Lsp1109I	GCAGC	1 cut(s)	216
LweI	GCATC	1 cut(s)	102
MaeI	CTAG	1 cut(s)	113
MalI	GATC	1 cut(s)	60
MbiI	CCGCTC	1 cut(s)	319
MboI	GATC	1 cut(s)	58
MboII	GAAGA	1 cut(s)	246
MhlI	GDGCHC	1 cut(s)	75
MluCI	AATT	2 cut(s)	235, 390
MlyI	GAGTC	1 cut(s)	406
MmeI	TCCRAC	1 cut(s)	136
MseI	TTAA	1 cut(s)	383
MspI	CCGG	2 cut(s)	47, 222
MspR9I	CCNGG	1 cut(s)	47
MvnI	CGCG	3 cut(s)	77, 178, 359
NciI	CCSGG	1 cut(s)	47
NdeII	GATC	1 cut(s)	58
NlaIII	CATG	1 cut(s)	350
NlaIV	GGNNCC	1 cut(s)	73
NspV	TTCGAA	1 cut(s)	146
PaeR7I	CTCGAG	1 cut(s)	413
PcsI	WCGNNNNNNNCGW	1 cut(s)	93
PkrI	GCNGC	4 cut(s)	36, 206, 321, 361
PleI	GAGTC	1 cut(s)	405
PpsI	GAGTC	1 cut(s)	405
PspN4I	GGNNCC	1 cut(s)	73
PspOMI	GGGCCC	1 cut(s)	71
PspPI	GGNCC	4 cut(s)	44, 71, 72, 140
SaqAI	TTAA	1 cut(s)	383
SatI	GCNGC	4 cut(s)	35, 205, 320, 360
Sau3AI	GATC	1 cut(s)	58
Sau96I	GGNCC	4 cut(s)	44, 71, 72, 140
SchI	GAGTC	1 cut(s)	406
ScrFI	CCNGG	1 cut(s)	47
SduI	GDGCHC	1 cut(s)	75
SetI	ASST	4 cut(s)	124, 136, 302, 372
SfaNI	GCATC	1 cut(s)	102
Sfr274I	CTCGAG	1 cut(s)	413
SfuI	TTCGAA	1 cut(s)	146
SlaI	CTCGAG	1 cut(s)	413
SmlI	CTYRAG	1 cut(s)	413
SmoI	CTYRAG	1 cut(s)	413
Sse9I	AATT	2 cut(s)	235, 390
SsiI	CCGC	7 cut(s)	28, 35, 75, 178, 319, 359, 362
SspMI	CTAG	1 cut(s)	113
StyD4I	CCNGG	1 cut(s)	45
TaaI	ACNGT	2 cut(s)	12, 197
TaqI	TCGA	3 cut(s)	96, 146, 414
TasI	AATT	2 cut(s)	235, 390
TauI	GCSGC	3 cut(s)	37, 322, 362
Tru1I	TTAA	1 cut(s)	383
Tru9I	TTAA	1 cut(s)	383
TseI	GCWGC	1 cut(s)	204
TspGWI	ACGGA	2 cut(s)	21, 55
XagI	CCTNNNNNAGG	1 cut(s)	147
XapI	RAATTY	1 cut(s)	235
XhoI	CTCGAG	1 cut(s)	413
XspI	CTAG	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.