AtPRD1,PRD1
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G14180 AT4G14180 |
| fragaria_vesca | FvH4_4g12860 |
| malus_domestica | MD04G1022200.v1.1 |
| prunus_persica | Prupe.1G172400_v2.0.a1 Prupe.1G176200_v2.0.a1 |
| pyrus_communis | pycom04g01870 |
| rosa_chinensis | RchiOBHm_Chr4g0412451 RchiOBHm_Chr4g0412511 |
| rosa_laevigata | RLG00000008284 RLG00000008287 RLG00000008289 RLG00000008295 RLG00000008298 |
| rosa_multiflora | Rmu_sc0002604.1_g000020 Rmu_sc0003914.1_g000006 Rmu_sc0005615.1_g000012 |
| rosa_roxburghii | Rroxscaffold_161G00448090 Rroxscaffold_2G00117420 Rroxscaffold_4G00325160 Rroxscaffold_5G00356600 Rroxscaffold_5G00356610 Rroxscaffold_5G00356660 Rroxscaffold_5G00356680 Rroxscaffold_5G00356720 Rroxscaffold_7G00197050 |
| rosa_rugosa | Rorug04G0103300 Rorug04G0103400 Rorug04G0103700.1 |
| rosa_samantha | Rh4AG173200 Rh4AG173600 Rh4BG173100 Rh4CG184000 Rh4CG184500 Rh4DG167600 Rh4DG168300 Rh4DG168400 Rh4DG168900 |
| rosa_wichuraiana | Rw4G014490 Rw4G014550 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 744 |
| AccB1I | GGYRCC | 1 cut(s) | 440 |
| AccBSI | CCGCTC | 2 cut(s) | 261, 368 |
| AccI | GTMKAC | 2 cut(s) | 2553, 3401 |
| AclI | AACGTT | 1 cut(s) | 3591 |
| AclWI | GGATC | 7 cut(s) | 380, 1076, 1089, 1916, 3071, 3160, 3862 |
| AcsI | RAATTY | 6 cut(s) | 591, 1567, 1600, 2268, 2342, 3604 |
| AcuI | CTGAAG | 5 cut(s) | 858, 1088, 1221, 1256, 1700 |
| AcvI | CACGTG | 1 cut(s) | 205 |
| AcyI | GRCGYC | 2 cut(s) | 441, 741 |
| AdeI | CACNNNGTG | 1 cut(s) | 1002 |
| AfaI | GTAC | 9 cut(s) | 5, 1020, 1489, 1689, 3045, 3182, 3260, 3719, 3918 |
| AfeI | AGCGCT | 1 cut(s) | 762 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 450, 2164, 2695, 3087, 3316, 3457 |
| AflII | CTTAAG | 1 cut(s) | 2936 |
| AflIII | ACRYGT | 3 cut(s) | 204, 1548, 2784 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 350 |
| AhlI | ACTAGT | 2 cut(s) | 1021, 1300 |
| AjnI | CCWGG | 4 cut(s) | 231, 3456, 3696, 3774 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1086, 1118 |
| AleI | CACNNNNGTG | 1 cut(s) | 2663 |
| Alw21I | GWGCWC | 6 cut(s) | 1622, 1769, 2859, 3432, 3614, 3640 |
| Alw26I | GTCTC | 7 cut(s) | 528, 1358, 1667, 2174, 2807, 2905, 2978 |
| Alw44I | GTGCAC | 1 cut(s) | 1618 |
| AlwI | GGATC | 7 cut(s) | 380, 1076, 1089, 1916, 3071, 3160, 3862 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 2210, 2338, 2978 |
| Aor51HI | AGCGCT | 1 cut(s) | 762 |
| AoxI | GGCC | 8 cut(s) | 103, 234, 544, 714, 919, 2155, 2942, 3331 |
| ApaI | GGGCCC | 1 cut(s) | 923 |
| ApaLI | GTGCAC | 1 cut(s) | 1618 |
| ApeKI | GCWGC | 5 cut(s) | 398, 1439, 2606, 2777, 2927 |
| ApoI | RAATTY | 6 cut(s) | 591, 1567, 1600, 2268, 2342, 3604 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1744, 1776, 2488, 2520 |
| AseI | ATTAAT | 1 cut(s) | 3477 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 591, 1302, 1698, 2291, 3068 |
| AspLEI | GCGC | 3 cut(s) | 443, 702, 763 |
| AspS9I | GGNCC | 7 cut(s) | 103, 235, 715, 919, 920, 1090, 2942 |
| AsuC2I | CCSGG | 2 cut(s) | 1269, 1506 |
| AsuHPI | GGTGA | 8 cut(s) | 77, 355, 2264, 2732, 2752, 2758, 2821, 3775 |
| AvaII | GGWCC | 1 cut(s) | 1090 |
| AxyI | CCTNAGG | 1 cut(s) | 3082 |
| BaeGI | GKGCMC | 2 cut(s) | 923, 1622 |
| BamHI | GGATCC | 1 cut(s) | 1081 |
| BanI | GGYRCC | 1 cut(s) | 440 |
| BanII | GRGCYC | 3 cut(s) | 923, 3432, 3640 |
| BbrPI | CACGTG | 1 cut(s) | 205 |
| BbsI | GAAGAC | 5 cut(s) | 51, 57, 563, 731, 2250 |
| Bbv12I | GWGCWC | 6 cut(s) | 1622, 1769, 2859, 3432, 3614, 3640 |
| BbvI | GCAGC | 5 cut(s) | 385, 1451, 2618, 2764, 2939 |
| BccI | CCATC | 7 cut(s) | 155, 344, 1334, 1420, 1924, 2360, 3409 |
| BceAI | ACGGC | 1 cut(s) | 444 |
| BciT130I | CCWGG | 4 cut(s) | 233, 3458, 3698, 3776 |
| BcnI | CCSGG | 2 cut(s) | 1269, 1506 |
| BcoDI | GTCTC | 7 cut(s) | 528, 1358, 1667, 2174, 2807, 2905, 2978 |
| BcuI | ACTAGT | 2 cut(s) | 1021, 1300 |
| BfaI | CTAG | 9 cut(s) | 314, 695, 1022, 1301, 1796, 2897, 3576, 3678, 3836 |
| BfmI | CTRYAG | 5 cut(s) | 1809, 2197, 2526, 2778, 3301 |
| BfoI | RGCGCY | 2 cut(s) | 444, 764 |
| BfrI | CTTAAG | 1 cut(s) | 2936 |
| BglII | AGATCT | 2 cut(s) | 662, 3548 |
| BisI | GCNGC | 8 cut(s) | 83, 142, 399, 1440, 2607, 2778, 2928, 3597 |
| BlpI | GCTNAGC | 1 cut(s) | 1844 |
| BlsI | GCNGC | 8 cut(s) | 84, 143, 400, 1441, 2608, 2779, 2929, 3598 |
| BmcAI | AGTACT | 2 cut(s) | 1020, 1689 |
| Bme1390I | CCNGG | 6 cut(s) | 233, 1269, 1506, 3458, 3698, 3776 |
| Bme18I | GGWCC | 1 cut(s) | 1090 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 350 |
| BmgT120I | GGNCC | 7 cut(s) | 103, 235, 715, 919, 920, 1090, 2942 |
| BmiI | GGNNCC | 7 cut(s) | 145, 442, 921, 1083, 1179, 2113, 2943 |
| BmrFI | CCNGG | 6 cut(s) | 233, 1269, 1506, 3458, 3698, 3776 |
| BmrI | ACTGGG | 1 cut(s) | 1890 |
| BmuI | ACTGGG | 1 cut(s) | 1890 |
| BpiI | GAAGAC | 5 cut(s) | 51, 57, 563, 731, 2250 |
| BpmI | CTGGAG | 2 cut(s) | 3000, 3680 |
| Bpu10I | CCTNAGC | 1 cut(s) | 484 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1844 |
| BpuEI | CTTGAG | 2 cut(s) | 1379, 3884 |
| BpuMI | CCSGG | 2 cut(s) | 1269, 1506 |
| BsaAI | YACGTR | 1 cut(s) | 205 |
| BsaBI | GATNNNNATC | 1 cut(s) | 882 |
| BsaHI | GRCGYC | 2 cut(s) | 441, 741 |
| BsaI | GGTCTC | 1 cut(s) | 2174 |
| BsaJI | CCNNGG | 7 cut(s) | 231, 444, 1267, 1637, 1681, 2386, 3047 |
| BsaWI | WCCGGW | 3 cut(s) | 62, 1216, 3367 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 450, 2164, 2695, 3087, 3316, 3457 |
| Bse1I | ACTGG | 7 cut(s) | 1181, 1695, 1857, 1885, 2578, 3065, 3545 |
| Bse21I | CCTNAGG | 1 cut(s) | 3082 |
| Bse3DI | GCAATG | 4 cut(s) | 478, 1035, 1755, 3441 |
| Bse8I | GATNNNNATC | 1 cut(s) | 882 |
| BseBI | CCWGG | 4 cut(s) | 233, 3458, 3698, 3776 |
| BseDI | CCNNGG | 7 cut(s) | 231, 444, 1267, 1637, 1681, 2386, 3047 |
| BseJI | GATNNNNATC | 1 cut(s) | 882 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 450, 2164, 2695, 3087, 3316, 3457 |
| BseMI | GCAATG | 4 cut(s) | 478, 1035, 1755, 3441 |
| BseMII | CTCAG | 8 cut(s) | 32, 897, 1052, 1858, 2475, 3096, 3204, 3325 |
| BseNI | ACTGG | 7 cut(s) | 1181, 1695, 1857, 1885, 2578, 3065, 3545 |
| BseRI | GAGGAG | 7 cut(s) | 146, 257, 278, 1376, 1570, 1685, 3251 |
| BseSI | GKGCMC | 2 cut(s) | 923, 1622 |
| BseXI | GCAGC | 5 cut(s) | 385, 1451, 2618, 2764, 2939 |
| BseYI | CCCAGC | 1 cut(s) | 222 |
| BsgI | GTGCAG | 3 cut(s) | 1024, 3113, 3154 |
| Bsh1285I | CGRYCG | 1 cut(s) | 427 |
| BshFI | GGCC | 8 cut(s) | 105, 236, 546, 716, 921, 2157, 2944, 3333 |
| BshNI | GGYRCC | 1 cut(s) | 440 |
| BsiEI | CGRYCG | 1 cut(s) | 427 |
| BsiHKAI | GWGCWC | 6 cut(s) | 1622, 1769, 2859, 3432, 3614, 3640 |
| BsiSI | CCGG | 7 cut(s) | 63, 438, 1085, 1217, 1269, 1506, 3368 |
| BslFI | GGGAC | 3 cut(s) | 811, 2629, 3434 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 450, 2164, 2695, 3087, 3316, 3457 |
| BsmAI | GTCTC | 7 cut(s) | 528, 1358, 1667, 2174, 2807, 2905, 2978 |
| BsmFI | GGGAC | 3 cut(s) | 811, 2629, 3434 |
| BsmI | GAATGC | 4 cut(s) | 1079, 1278, 1519, 2817 |
| BsnI | GGCC | 8 cut(s) | 105, 236, 546, 716, 921, 2157, 2944, 3333 |
| Bso31I | GGTCTC | 1 cut(s) | 2174 |
| Bsp120I | GGGCCC | 1 cut(s) | 919 |
| Bsp1286I | GDGCHC | 7 cut(s) | 923, 1622, 1769, 2859, 3432, 3614, 3640 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1844 |
| Bsp19I | CCATGG | 1 cut(s) | 3047 |
| BspANI | GGCC | 8 cut(s) | 105, 236, 546, 716, 921, 2157, 2944, 3333 |
| BspCNI | CTCAG | 8 cut(s) | 31, 898, 1053, 1857, 2476, 3095, 3205, 3324 |
| BspHI | TCATGA | 3 cut(s) | 720, 1374, 2794 |
| BspLI | GGNNCC | 7 cut(s) | 145, 442, 921, 1083, 1179, 2113, 2943 |
| BspMAI | CTGCAG | 1 cut(s) | 2782 |
| BspPI | GGATC | 7 cut(s) | 380, 1076, 1089, 1916, 3071, 3160, 3862 |
| BspQI | GCTCTTC | 1 cut(s) | 3420 |
| BspT107I | GGYRCC | 1 cut(s) | 440 |
| BspTI | CTTAAG | 1 cut(s) | 2936 |
| BspTNI | GGTCTC | 1 cut(s) | 2174 |
| BsrBI | CCGCTC | 2 cut(s) | 261, 368 |
| BsrDI | GCAATG | 4 cut(s) | 478, 1035, 1755, 3441 |
| BsrI | ACTGG | 7 cut(s) | 1181, 1695, 1857, 1885, 2578, 3065, 3545 |
| BssECI | CCNNGG | 7 cut(s) | 231, 444, 1267, 1637, 1681, 2386, 3047 |
| BssNAI | GTATAC | 1 cut(s) | 3402 |
| BssNI | GRCGYC | 2 cut(s) | 441, 741 |
| BssT1I | CCWWGG | 5 cut(s) | 444, 1637, 1681, 2386, 3047 |
| Bst1107I | GTATAC | 1 cut(s) | 3402 |
| Bst2UI | CCWGG | 4 cut(s) | 233, 3458, 3698, 3776 |
| Bst6I | CTCTTC | 3 cut(s) | 439, 1662, 3420 |
| BstACI | GRCGYC | 2 cut(s) | 441, 741 |
| BstAFI | CTTAAG | 1 cut(s) | 2936 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 1002, 2823, 3120 |
| BstBAI | YACGTR | 1 cut(s) | 205 |
| BstDSI | CCRYGG | 1 cut(s) | 3047 |
| BstEII | GGTNACC | 1 cut(s) | 1645 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 3085 |
| BstH2I | RGCGCY | 2 cut(s) | 444, 764 |
| BstHHI | GCGC | 3 cut(s) | 443, 702, 763 |
| BstMAI | GTCTC | 7 cut(s) | 528, 1358, 1667, 2174, 2807, 2905, 2978 |
| BstMCI | CGRYCG | 1 cut(s) | 427 |
| BstNI | CCWGG | 4 cut(s) | 233, 3458, 3698, 3776 |
| BstNSI | RCATGY | 5 cut(s) | 96, 1357, 1552, 2788, 2934 |
| BstPI | GGTNACC | 1 cut(s) | 1645 |
| BstSCI | CCNGG | 6 cut(s) | 231, 1267, 1504, 3456, 3696, 3774 |
| BstSFI | CTRYAG | 5 cut(s) | 1809, 2197, 2526, 2778, 3301 |
| BstSLI | GKGCMC | 2 cut(s) | 923, 1622 |
| BstV1I | GCAGC | 5 cut(s) | 385, 1451, 2618, 2764, 2939 |
| BstV2I | GAAGAC | 5 cut(s) | 51, 57, 563, 731, 2250 |
| BstX2I | RGATCY | 5 cut(s) | 662, 1081, 3076, 3152, 3548 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2917 |
| BstYI | RGATCY | 5 cut(s) | 662, 1081, 3076, 3152, 3548 |
| BstZ17I | GTATAC | 1 cut(s) | 3402 |
| Bsu36I | CCTNAGG | 1 cut(s) | 3082 |
| BsuRI | GGCC | 8 cut(s) | 105, 236, 546, 716, 921, 2157, 2944, 3333 |
| BtgI | CCRYGG | 1 cut(s) | 3047 |
| BtgZI | GCGATG | 1 cut(s) | 322 |
| BtsI | GCAGTG | 4 cut(s) | 1457, 2379, 2859, 3171 |
| CaiI | CAGNNNCTG | 3 cut(s) | 2210, 2338, 2978 |
| CciI | TCATGA | 3 cut(s) | 720, 1374, 2794 |
| CfoI | GCGC | 3 cut(s) | 443, 702, 763 |
| Cfr13I | GGNCC | 7 cut(s) | 103, 235, 715, 919, 920, 1090, 2942 |
| CseI | GACGC | 1 cut(s) | 1431 |
| Csp6I | GTAC | 9 cut(s) | 4, 1019, 1488, 1688, 3044, 3181, 3259, 3718, 3917 |
| CviQI | GTAC | 9 cut(s) | 4, 1019, 1488, 1688, 3044, 3181, 3259, 3718, 3917 |
| DinI | GGCGCC | 1 cut(s) | 442 |
| DraI | TTTAAA | 2 cut(s) | 2683, 3684 |
| DraIII | CACNNNGTG | 1 cut(s) | 1002 |
| DriI | GACNNNNNGTC | 1 cut(s) | 350 |
| Eam1104I | CTCTTC | 3 cut(s) | 439, 1662, 3420 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 350 |
| EarI | CTCTTC | 3 cut(s) | 439, 1662, 3420 |
| EciI | GGCGGA | 1 cut(s) | 370 |
| Ecl136II | GAGCTC | 2 cut(s) | 3430, 3638 |
| Eco130I | CCWWGG | 5 cut(s) | 444, 1637, 1681, 2386, 3047 |
| Eco24I | GRGCYC | 3 cut(s) | 923, 3432, 3640 |
| Eco31I | GGTCTC | 1 cut(s) | 2174 |
| Eco32I | GATATC | 1 cut(s) | 2655 |
| Eco47I | GGWCC | 1 cut(s) | 1090 |
| Eco47III | AGCGCT | 1 cut(s) | 762 |
| Eco53kI | GAGCTC | 2 cut(s) | 3430, 3638 |
| Eco57I | CTGAAG | 5 cut(s) | 858, 1088, 1221, 1256, 1700 |
| Eco72I | CACGTG | 1 cut(s) | 205 |
| Eco81I | CCTNAGG | 1 cut(s) | 3082 |
| Eco91I | GGTNACC | 1 cut(s) | 1645 |
| EcoICRI | GAGCTC | 2 cut(s) | 3430, 3638 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 3085 |
| EcoO109I | RGGNCCY | 3 cut(s) | 235, 715, 919 |
| EcoO65I | GGTNACC | 1 cut(s) | 1645 |
| EcoRI | GAATTC | 1 cut(s) | 2268 |
| EcoRII | CCWGG | 4 cut(s) | 231, 3456, 3696, 3774 |
| EcoRV | GATATC | 1 cut(s) | 2655 |
| EcoT14I | CCWWGG | 5 cut(s) | 444, 1637, 1681, 2386, 3047 |
| EcoT22I | ATGCAT | 3 cut(s) | 646, 885, 3147 |
| EcoT38I | GRGCYC | 3 cut(s) | 923, 3432, 3640 |
| EgeI | GGCGCC | 1 cut(s) | 442 |
| EheI | GGCGCC | 1 cut(s) | 442 |
| ErhI | CCWWGG | 5 cut(s) | 444, 1637, 1681, 2386, 3047 |
| FaqI | GGGAC | 3 cut(s) | 811, 2629, 3434 |
| FauI | CCCGC | 1 cut(s) | 290 |
| FauNDI | CATATG | 1 cut(s) | 805 |
| FblI | GTMKAC | 2 cut(s) | 2553, 3401 |
| Fnu4HI | GCNGC | 8 cut(s) | 83, 142, 399, 1440, 2607, 2778, 2928, 3597 |
| FriOI | GRGCYC | 3 cut(s) | 923, 3432, 3640 |
| Fsp4HI | GCNGC | 8 cut(s) | 83, 142, 399, 1440, 2607, 2778, 2928, 3597 |
| FspBI | CTAG | 9 cut(s) | 314, 695, 1022, 1301, 1796, 2897, 3576, 3678, 3836 |
| GlaI | GCGC | 3 cut(s) | 442, 701, 762 |
| GluI | GCNGC | 8 cut(s) | 83, 142, 399, 1440, 2607, 2778, 2928, 3597 |
| GsaI | CCCAGC | 1 cut(s) | 226 |
| GsuI | CTGGAG | 2 cut(s) | 3000, 3680 |
| HaeII | RGCGCY | 2 cut(s) | 444, 764 |
| HaeIII | GGCC | 8 cut(s) | 105, 236, 546, 716, 921, 2157, 2944, 3333 |
| HapII | CCGG | 7 cut(s) | 63, 438, 1085, 1217, 1269, 1506, 3368 |
| HgaI | GACGC | 1 cut(s) | 1431 |
| HhaI | GCGC | 3 cut(s) | 443, 702, 763 |
| Hin1I | GRCGYC | 2 cut(s) | 441, 741 |
| Hin6I | GCGC | 3 cut(s) | 441, 700, 761 |
| HinP1I | GCGC | 3 cut(s) | 441, 700, 761 |
| HincII | GTYRAC | 4 cut(s) | 1511, 2089, 2554, 2956 |
| HindII | GTYRAC | 4 cut(s) | 1511, 2089, 2554, 2956 |
| HindIII | AAGCTT | 2 cut(s) | 1137, 2865 |
| HpaII | CCGG | 7 cut(s) | 63, 438, 1085, 1217, 1269, 1506, 3368 |
| HphI | GGTGA | 8 cut(s) | 77, 355, 2264, 2732, 2752, 2758, 2821, 3775 |
| Hpy99I | CGWCG | 7 cut(s) | 14, 59, 91, 329, 332, 356, 413 |
| HpyCH4IV | ACGT | 3 cut(s) | 204, 741, 3591 |
| HpySE526I | ACGT | 3 cut(s) | 204, 741, 3591 |
| Hsp92I | GRCGYC | 2 cut(s) | 441, 741 |
| HspAI | GCGC | 3 cut(s) | 441, 700, 761 |
| KasI | GGCGCC | 1 cut(s) | 440 |
| LguI | GCTCTTC | 1 cut(s) | 3420 |
| LmnI | GCTCC | 6 cut(s) | 149, 266, 2111, 2456, 3193, 3699 |
| Lsp1109I | GCAGC | 5 cut(s) | 385, 1451, 2618, 2764, 2939 |
| MaeI | CTAG | 9 cut(s) | 314, 695, 1022, 1301, 1796, 2897, 3576, 3678, 3836 |
| MaeII | ACGT | 3 cut(s) | 204, 741, 3591 |
| MaeIII | GTNAC | 5 cut(s) | 21, 65, 361, 1645, 3305 |
| MbiI | CCGCTC | 2 cut(s) | 261, 368 |
| MfeI | CAATTG | 1 cut(s) | 2421 |
| MflI | RGATCY | 5 cut(s) | 662, 1081, 3076, 3152, 3548 |
| MhlI | GDGCHC | 7 cut(s) | 923, 1622, 1769, 2859, 3432, 3614, 3640 |
| Mly113I | GGCGCC | 1 cut(s) | 441 |
| MlyI | GAGTC | 5 cut(s) | 53, 463, 1571, 2636, 3836 |
| MmeI | TCCRAC | 4 cut(s) | 267, 1518, 2588, 3171 |
| Mph1103I | ATGCAT | 3 cut(s) | 646, 885, 3147 |
| MroXI | GAANNNNTTC | 5 cut(s) | 591, 1302, 1698, 2291, 3068 |
| MslI | CAYNNNNRTG | 6 cut(s) | 1338, 1789, 2132, 2287, 2451, 2663 |
| MspCI | CTTAAG | 1 cut(s) | 2936 |
| MspI | CCGG | 7 cut(s) | 63, 438, 1085, 1217, 1269, 1506, 3368 |
| MspR9I | CCNGG | 6 cut(s) | 233, 1269, 1506, 3458, 3698, 3776 |
| MunI | CAATTG | 1 cut(s) | 2421 |
| Mva1269I | GAATGC | 4 cut(s) | 1079, 1278, 1519, 2817 |
| MvaI | CCWGG | 4 cut(s) | 233, 3458, 3698, 3776 |
| NarI | GGCGCC | 1 cut(s) | 441 |
| NciI | CCSGG | 2 cut(s) | 1269, 1506 |
| NcoI | CCATGG | 1 cut(s) | 3047 |
| NdeI | CATATG | 1 cut(s) | 805 |
| NlaIV | GGNNCC | 7 cut(s) | 145, 442, 921, 1083, 1179, 2113, 2943 |
| NmeAIII | GCCGAG | 1 cut(s) | 1156 |
| NmuCI | GTSAC | 4 cut(s) | 21, 65, 361, 3305 |
| NsiI | ATGCAT | 3 cut(s) | 646, 885, 3147 |
| NspI | RCATGY | 5 cut(s) | 96, 1357, 1552, 2788, 2934 |
| OliI | CACNNNNGTG | 1 cut(s) | 2663 |
| PaeI | GCATGC | 1 cut(s) | 1357 |
| PagI | TCATGA | 3 cut(s) | 720, 1374, 2794 |
| PciI | ACATGT | 2 cut(s) | 1548, 2784 |
| PciSI | GCTCTTC | 1 cut(s) | 3420 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 54, 86, 357 |
| PctI | GAATGC | 4 cut(s) | 1079, 1278, 1519, 2817 |
| PdmI | GAANNNNTTC | 5 cut(s) | 591, 1302, 1698, 2291, 3068 |
| PfeI | GAWTC | 8 cut(s) | 14, 377, 815, 1721, 2120, 2217, 2791, 3845 |
| PflFI | GACNNNGTC | 1 cut(s) | 407 |
| PkrI | GCNGC | 8 cut(s) | 84, 143, 400, 1441, 2608, 2779, 2929, 3598 |
| Ple19I | CGATCG | 1 cut(s) | 427 |
| PleI | GAGTC | 5 cut(s) | 53, 462, 1571, 2635, 3835 |
| PluTI | GGCGCC | 1 cut(s) | 444 |
| PmaCI | CACGTG | 1 cut(s) | 205 |
| PmlI | CACGTG | 1 cut(s) | 205 |
| PpsI | GAGTC | 5 cut(s) | 53, 462, 1571, 2635, 3835 |
| Ppu21I | YACGTR | 1 cut(s) | 205 |
| PscI | ACATGT | 2 cut(s) | 1548, 2784 |
| PshBI | ATTAAT | 1 cut(s) | 3477 |
| Psp124BI | GAGCTC | 2 cut(s) | 3432, 3640 |
| Psp1406I | AACGTT | 1 cut(s) | 3591 |
| Psp6I | CCWGG | 4 cut(s) | 231, 3456, 3696, 3774 |
| PspCI | CACGTG | 1 cut(s) | 205 |
| PspEI | GGTNACC | 1 cut(s) | 1645 |
| PspFI | CCCAGC | 1 cut(s) | 222 |
| PspGI | CCWGG | 4 cut(s) | 231, 3456, 3696, 3774 |
| PspN4I | GGNNCC | 7 cut(s) | 145, 442, 921, 1083, 1179, 2113, 2943 |
| PspOMI | GGGCCC | 1 cut(s) | 919 |
| PspPI | GGNCC | 7 cut(s) | 103, 235, 715, 919, 920, 1090, 2942 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1188, 1220 |
| PstI | CTGCAG | 1 cut(s) | 2782 |
| PstNI | CAGNNNCTG | 3 cut(s) | 2210, 2338, 2978 |
| PsuI | RGATCY | 5 cut(s) | 662, 1081, 3076, 3152, 3548 |
| PsyI | GACNNNGTC | 1 cut(s) | 407 |
| PvuI | CGATCG | 1 cut(s) | 427 |
| RsaI | GTAC | 9 cut(s) | 5, 1020, 1489, 1689, 3045, 3182, 3260, 3719, 3918 |
| RsaNI | GTAC | 9 cut(s) | 4, 1019, 1488, 1688, 3044, 3181, 3259, 3718, 3917 |
| RseI | CAYNNNNRTG | 6 cut(s) | 1338, 1789, 2132, 2287, 2451, 2663 |
| SacI | GAGCTC | 2 cut(s) | 3432, 3640 |
| SalI | GTCGAC | 1 cut(s) | 2552 |
| SapI | GCTCTTC | 1 cut(s) | 3420 |
| SatI | GCNGC | 8 cut(s) | 83, 142, 399, 1440, 2607, 2778, 2928, 3597 |
| Sau96I | GGNCC | 7 cut(s) | 103, 235, 715, 919, 920, 1090, 2942 |
| ScaI | AGTACT | 2 cut(s) | 1020, 1689 |
| SchI | GAGTC | 5 cut(s) | 53, 463, 1571, 2636, 3836 |
| ScrFI | CCNGG | 6 cut(s) | 233, 1269, 1506, 3458, 3698, 3776 |
| SduI | GDGCHC | 7 cut(s) | 923, 1622, 1769, 2859, 3432, 3614, 3640 |
| SfcI | CTRYAG | 5 cut(s) | 1809, 2197, 2526, 2778, 3301 |
| SfoI | GGCGCC | 1 cut(s) | 442 |
| SinI | GGWCC | 1 cut(s) | 1090 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 1338, 1789, 2132, 2287, 2451, 2663 |
| SmlI | CTYRAG | 3 cut(s) | 1358, 2936, 3863 |
| SmoI | CTYRAG | 3 cut(s) | 1358, 2936, 3863 |
| SpeI | ACTAGT | 2 cut(s) | 1021, 1300 |
| SphI | GCATGC | 1 cut(s) | 1357 |
| SspDI | GGCGCC | 1 cut(s) | 440 |
| SspI | AATATT | 1 cut(s) | 3532 |
| SspMI | CTAG | 9 cut(s) | 314, 695, 1022, 1301, 1796, 2897, 3576, 3678, 3836 |
| SstI | GAGCTC | 2 cut(s) | 3432, 3640 |
| StyD4I | CCNGG | 6 cut(s) | 231, 1267, 1504, 3456, 3696, 3774 |
| StyI | CCWWGG | 5 cut(s) | 444, 1637, 1681, 2386, 3047 |
| TaiI | ACGT | 3 cut(s) | 207, 744, 3594 |
| TaqI | TCGA | 7 cut(s) | 9, 324, 354, 1706, 1763, 2553, 3634 |
| TatI | WGTACW | 5 cut(s) | 3, 1018, 1687, 3717, 3916 |
| TauI | GCSGC | 3 cut(s) | 85, 144, 3599 |
| TfiI | GAWTC | 8 cut(s) | 14, 377, 815, 1721, 2120, 2217, 2791, 3845 |
| TseFI | GTSAC | 4 cut(s) | 21, 65, 361, 3305 |
| TseI | GCWGC | 5 cut(s) | 398, 1439, 2606, 2777, 2927 |
| Tsp45I | GTSAC | 4 cut(s) | 21, 65, 361, 3305 |
| TspGWI | ACGGA | 1 cut(s) | 3680 |
| Tth111I | GACNNNGTC | 1 cut(s) | 407 |
| Vha464I | CTTAAG | 1 cut(s) | 2936 |
| VneI | GTGCAC | 1 cut(s) | 1618 |
| VpaK11BI | GGWCC | 1 cut(s) | 1090 |
| VspI | ATTAAT | 1 cut(s) | 3477 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 3085 |
| XapI | RAATTY | 6 cut(s) | 591, 1567, 1600, 2268, 2342, 3604 |
| XbaI | TCTAGA | 1 cut(s) | 3835 |
| XceI | RCATGY | 5 cut(s) | 96, 1357, 1552, 2788, 2934 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2665 |
| XmiI | GTMKAC | 2 cut(s) | 2553, 3401 |
| XmnI | GAANNNNTTC | 5 cut(s) | 591, 1302, 1698, 2291, 3068 |
| XspI | CTAG | 9 cut(s) | 314, 695, 1022, 1301, 1796, 2897, 3576, 3678, 3836 |
| ZraI | GACGTC | 1 cut(s) | 742 |
| ZrmI | AGTACT | 2 cut(s) | 1020, 1689 |
| Zsp2I | ATGCAT | 3 cut(s) | 646, 885, 3147 |